mRNA_C-tenellus_contig9988.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9988.1.1
Unique NamemRNA_C-tenellus_contig9988.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: D2Z249_HETAK (Cytochrome c oxidase subunit 2 n=3 Tax=Heterosigma akashiwo TaxID=2829 RepID=D2Z249_HETAK)

HSP 1 Score: 97.1 bits (240), Expect = 5.250e-23
Identity = 46/69 (66.67%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+R++LP+    RVLVT A VL SWA+P L VKVD CPGRLNQ+ L +K  G FYGQCSEICGVNH
Sbjct:  168 LEVDNRIVLPVNTHIRVLVTAADVLHSWAIPSLGVKVDACPGRLNQVSLFMKREGVFYGQCSEICGVNH 236
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BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: A0A8F0FF00_9PHAE (Cytochrome c oxidase subunit 2 n=1 Tax=Protohalopteris sp. TaxID=2843287 RepID=A0A8F0FF00_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.260e-22
Identity = 48/69 (69.57%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RV+LP+    RVLVT A VL SWA+P L +KVD CPGRLNQI L LK  G FYGQCSEICGVNH
Sbjct:  183 LEVDNRVVLPIYTHIRVLVTGADVLHSWAIPSLGIKVDSCPGRLNQIFLFLKRDGVFYGQCSEICGVNH 251
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BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: A0A4Y5T816_9PHAE (Cytochrome c oxidase subunit 2 n=1 Tax=Dictyopteris divaricata TaxID=156996 RepID=A0A4Y5T816_9PHAE)

HSP 1 Score: 96.3 bits (238), Expect = 1.570e-22
Identity = 49/69 (71.01%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RVILP+    RVLVT A VL SWAVP L VKVD CPGRLNQ+ L +K  G FYGQCSEICGVNH
Sbjct:  197 LEVDNRVILPVNTHIRVLVTGADVLHSWAVPSLGVKVDSCPGRLNQVHLFIKREGVFYGQCSEICGVNH 265
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: A0A7S6ZPE3_9STRA (Cytochrome c oxidase subunit 2 n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7S6ZPE3_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.840e-22
Identity = 45/69 (65.22%), Postives = 52/69 (75.36%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RV+LP     R+L+T A VL SWAVP L VK D CPGRLNQ C+ +K  G FYGQCSEICGVNH
Sbjct:  166 LEVDNRVVLPTNTHIRLLITAADVLHSWAVPSLGVKTDACPGRLNQACIFIKREGVFYGQCSEICGVNH 234
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: A0A2P1G879_9CRYP (Cytochrome c oxidase subunit 2 n=1 Tax=Storeatula sp. CCMP1868 TaxID=195070 RepID=A0A2P1G879_9CRYP)

HSP 1 Score: 95.1 bits (235), Expect = 3.370e-22
Identity = 44/69 (63.77%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+ V+LP+K   RVL+T A VL  WA+P L VK+D CPGRLNQI L +K  G+FYGQCSEICG+NH
Sbjct:  169 LEVDNPVVLPVKTHVRVLITAADVLHCWAIPSLGVKIDACPGRLNQISLFIKREGTFYGQCSEICGINH 237
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: B2MWR9_HEMAN (Cytochrome c oxidase subunit 2 n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=B2MWR9_HEMAN)

HSP 1 Score: 95.1 bits (235), Expect = 3.610e-22
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RV+LP+K   RVLVT + VL SWAVP L VK+D CPGRLNQ+ + +K  G FYGQCSE+CGVNH
Sbjct:  178 LEVDNRVVLPVKTHIRVLVTSSDVLHSWAVPSLGVKMDACPGRLNQVSVFIKREGVFYGQCSELCGVNH 246
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: D2Z204_9STRA (Cytochrome c oxidase subunit 2 n=5 Tax=Chattonella TaxID=44439 RepID=D2Z204_9STRA)

HSP 1 Score: 94.7 bits (234), Expect = 4.270e-22
Identity = 45/69 (65.22%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RV+LP+    R+LVT   VL SWAVP L VKVD CPGRLNQ+ + +K  G FYGQCSEICGVNH
Sbjct:  172 LEVDNRVLLPVNTHIRILVTAGDVLHSWAVPSLGVKVDACPGRLNQVSIFMKREGVFYGQCSEICGVNH 240
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: Q9G8U0_RHDSA (Cytochrome c oxidase subunit 2 n=1 Tax=Rhodomonas salina TaxID=52970 RepID=Q9G8U0_RHDSA)

HSP 1 Score: 94.7 bits (234), Expect = 4.730e-22
Identity = 45/69 (65.22%), Postives = 54/69 (78.26%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+ V+LP+K   RVLVT A VL  WAVP L VK+D CPGRLNQI L +K  G+FYGQCSE+CG+NH
Sbjct:  169 LEVDNPVVLPVKTHVRVLVTSADVLHCWAVPSLGVKIDACPGRLNQISLFIKREGTFYGQCSELCGINH 237
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: G1UD48_CUTMU (Cytochrome oxidase subunit 2 (Fragment) n=7 Tax=Cutleria TaxID=74474 RepID=G1UD48_CUTMU)

HSP 1 Score: 92.0 bits (227), Expect = 6.000e-22
Identity = 44/69 (63.77%), Postives = 53/69 (76.81%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+R+++P     RVL+T A VL SWAVP L VKVD CPGRLNQ+ L +K  G FYGQCSE+CGVNH
Sbjct:  101 LEVDNRLLVPTNTHIRVLITSADVLHSWAVPSLGVKVDACPGRLNQVFLFVKREGVFYGQCSELCGVNH 169
[Close]
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Match: B1NS87_9ODON (Cytochrome c oxidase subunit 2 (Fragment) n=1 Tax=Microstigma anomalum TaxID=476818 RepID=B1NS87_9ODON)

HSP 1 Score: 92.8 bits (229), Expect = 6.350e-22
Identity = 44/69 (63.77%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:    4 LEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL-LKT*GSFYGQCSEICGVNH 207
            LE+D+RVILP+ AQ R+++T A VL SW VPCL VK+D  PGRLNQ    L   G FYGQCSEICG NH
Sbjct:  108 LEVDNRVILPMDAQTRIIITAADVLHSWTVPCLGVKLDATPGRLNQTSFFLSRPGLFYGQCSEICGANH 176
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9988.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D2Z249_HETAK5.250e-2366.67Cytochrome c oxidase subunit 2 n=3 Tax=Heterosigma... [more]
A0A8F0FF00_9PHAE1.260e-2269.57Cytochrome c oxidase subunit 2 n=1 Tax=Protohalopt... [more]
A0A4Y5T816_9PHAE1.570e-2271.01Cytochrome c oxidase subunit 2 n=1 Tax=Dictyopteri... [more]
A0A7S6ZPE3_9STRA1.840e-2265.22Cytochrome c oxidase subunit 2 n=1 Tax=Schizocladi... [more]
A0A2P1G879_9CRYP3.370e-2263.77Cytochrome c oxidase subunit 2 n=1 Tax=Storeatula ... [more]
B2MWR9_HEMAN3.610e-2265.22Cytochrome c oxidase subunit 2 n=1 Tax=Hemiselmis ... [more]
D2Z204_9STRA4.270e-2265.22Cytochrome c oxidase subunit 2 n=5 Tax=Chattonella... [more]
Q9G8U0_RHDSA4.730e-2265.22Cytochrome c oxidase subunit 2 n=1 Tax=Rhodomonas ... [more]
G1UD48_CUTMU6.000e-2263.77Cytochrome oxidase subunit 2 (Fragment) n=7 Tax=Cu... [more]
B1NS87_9ODON6.350e-2263.77Cytochrome c oxidase subunit 2 (Fragment) n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9988contigC-tenellus_contig9988:3835..4041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog3885.XP_007138957.1
Preferred namecox2
PFAMsCOX2,COX2_TM
Model size207
Max annot lvl35493|Streptophyta
KEGG koko:K02261
KEGG TC3.D.4.11,3.D.4.7,3.D.4.8
KEGG Pathwayko00190,ko01100,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00154
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005746,GO:0005751,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009987,GO:0015980,GO:0016020,GO:0016310,GO:0017144,GO:0019637,GO:0019693,GO:0019866,GO:0022900,GO:0022904,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0034641,GO:0042773,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045277,GO:0045333,GO:0046034,GO:0046483,GO:0055086,GO:0055114,GO:0070069,GO:0070469,GO:0071704,GO:0072521,GO:0098796,GO:0098798,GO:0098800,GO:0098803,GO:1901135,GO:1901360,GO:1901564
Exons1
Evalue8.6e-11
EggNOG OGsCOG1622@1|root,KOG4767@2759|Eukaryota,37T4F@33090|Viridiplantae,3GGAX@35493|Streptophyta,4JT1W@91835|fabids
DescriptionCytochrome C oxidase, subunit
Cds size162
COG categoryC
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.2604063-CDS-C-tenellus_contig9988:3834..39961680790210.2604063-CDS-C-tenellus_contig9988:3834..3996Choristocarpus tenellus KU2346CDSC-tenellus_contig9988 3835..3996 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790210.2716982-UTR-C-tenellus_contig9988:3996..40411680790210.2716982-UTR-C-tenellus_contig9988:3996..4041Choristocarpus tenellus KU2346UTRC-tenellus_contig9988 3997..4041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9988.1.1prot_C-tenellus_contig9988.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9988 3835..3996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9988.1.1

>prot_C-tenellus_contig9988.1.1 ID=prot_C-tenellus_contig9988.1.1|Name=mRNA_C-tenellus_contig9988.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=54bp
VLEIDDRVILPLKAQNRVLVTLAGVLLSWAVPCLDVKVDYCPGRLNQICL
LKT*
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mRNA from alignment at C-tenellus_contig9988:3835..4041+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9988.1.1 ID=mRNA_C-tenellus_contig9988.1.1|Name=mRNA_C-tenellus_contig9988.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=207bp|location=Sequence derived from alignment at C-tenellus_contig9988:3835..4041+ (Choristocarpus tenellus KU2346)
GTACTAGAGATAGATGATCGTGTTATTTTACCTTTAAAGGCACAGAATAG
GGTTTTAGTTACATTGGCTGGCGTTTTACTTTCTTGGGCTGTACCTTGTT
TAGATGTAAAGGTTGATTATTGTCCTGGTAGATTAAATCAAATTTGTCTT
TTGAAAACGTAAGGCAGTTTTTACGGCCAATGCAGCGAAATTTGCGGAGT
CAATCAT
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Coding sequence (CDS) from alignment at C-tenellus_contig9988:3835..4041+

>mRNA_C-tenellus_contig9988.1.1 ID=mRNA_C-tenellus_contig9988.1.1|Name=mRNA_C-tenellus_contig9988.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=162bp|location=Sequence derived from alignment at C-tenellus_contig9988:3835..4041+ (Choristocarpus tenellus KU2346)
GTACTAGAGATAGATGATCGTGTTATTTTACCTTTAAAGGCACAGAATAG
GGTTTTAGTTACATTGGCTGGCGTTTTACTTTCTTGGGCTGTACCTTGTT
TAGATGTAAAGGTTGATTATTGTCCTGGTAGATTAAATCAAATTTGTCTT
TTGAAAACGTAA
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