mRNA_C-tenellus_contig9981.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9981.4.1
Unique NamemRNA_C-tenellus_contig9981.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: A0A1R2BFE9_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BFE9_9CILI)

HSP 1 Score: 52.8 bits (125), Expect = 4.730e-6
Identity = 23/43 (53.49%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:  133 WIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            W +IA  L  R+ +  R+AKQC ER ++HLDPEV KN W A+E
Sbjct:   29 WTLIAKMLVTRYNIRGRTAKQCRERWHNHLDPEVVKNYWDAEE 71
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: A0A2P6N029_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N029_9EUKA)

HSP 1 Score: 52.8 bits (125), Expect = 5.030e-6
Identity = 27/69 (39.13%), Postives = 41/69 (59.42%), Query Frame = 1 
Query:   55 RLLAGAFHRPKTRIISALLMCTELASWIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            +L+ GA+ + +  +++ L+  T   +W  IA  L  R        KQC ER Y+HLDPE+++N WTADE
Sbjct:  176 QLVKGAWTKEEDDLLTKLVRETGPKNWSQIANNLSGRI------GKQCRERWYNHLDPEINRNPWTADE 238
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: G0R0C8_ICHMG (Myb-like DNA-binding domain protein n=1 Tax=Ichthyophthirius multifiliis (strain G5) TaxID=857967 RepID=G0R0C8_ICHMG)

HSP 1 Score: 51.2 bits (121), Expect = 9.570e-6
Identity = 18/43 (41.86%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:  133 WIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            W +IA  + +++ ++ R+ KQC ER ++HLDP+++K +W ADE
Sbjct:   27 WSLIAQKMSEQYNISNRTGKQCRERWHNHLDPQINKEQWAADE 69
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: A0A1R2BLU1_9CILI (Uncharacterized protein n=1 Tax=Stentor coeruleus TaxID=5963 RepID=A0A1R2BLU1_9CILI)

HSP 1 Score: 51.2 bits (121), Expect = 1.670e-5
Identity = 21/43 (48.84%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:  133 WIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            W +IA  L  R+ +  R+AKQC ER ++HLDP++ KN W A+E
Sbjct:   29 WTLIAKILVTRYNIRGRTAKQCRERWHNHLDPDIVKNYWDAEE 71
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: A0A2P6N0E4_9EUKA (Uncharacterized protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6N0E4_9EUKA)

HSP 1 Score: 50.8 bits (120), Expect = 2.370e-5
Identity = 27/68 (39.71%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:   58 LLAGAFHRPKTRIISALLMCTELASWIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            L+ GA  + +  ++S L+      +W  IA  L  R        KQC ER Y+HLDPE++KN WTA E
Sbjct:  160 LVKGAXTKEEDEMLSQLVRDLGPKNWSTIANRLSGRI------GKQCRERWYNHLDPEINKNPWTAQE 221
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: A0A444URJ1_ACIRT (Myb-related protein B n=1 Tax=Acipenser ruthenus TaxID=7906 RepID=A0A444URJ1_ACIRT)

HSP 1 Score: 48.9 bits (115), Expect = 2.950e-5
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:   58 LLAGAFHRPKTRIISALLMCTELASWIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            L+ G + + +   +  L+ C     W  IA +LK R        KQC ER ++HL+PEV K+ WTA+E
Sbjct:   44 LVKGPWTKEEDEKVIELVNCYGTKQWATIAKHLKGRL------GKQCRERWHNHLNPEVKKSSWTAEE 105
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BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Match: UPI001B7F36CD (v-myb avian myeloblastosis viral oncogene homolog-like 2b isoform X4 n=2 Tax=Polyodon spathula TaxID=7913 RepID=UPI001B7F36CD)

HSP 1 Score: 49.3 bits (116), Expect = 8.580e-5
Identity = 25/68 (36.76%), Postives = 37/68 (54.41%), Query Frame = 1 
Query:   58 LLAGAFHRPKTRIISALLMCTELASWIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE 261
            L+ G + + +   +  L+ C     W  IA +LK R        KQC ER ++HL+PEV K+ WTA+E
Sbjct:   79 LIKGPWTKEEDEQVIELVNCYGTKQWATIAKHLKGRL------GKQCRERWHNHLNPEVKKSSWTAEE 140
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9981.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A1R2BFE9_9CILI4.730e-653.49Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A2P6N029_9EUKA5.030e-639.13Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
G0R0C8_ICHMG9.570e-641.86Myb-like DNA-binding domain protein n=1 Tax=Ichthy... [more]
A0A1R2BLU1_9CILI1.670e-548.84Uncharacterized protein n=1 Tax=Stentor coeruleus ... [more]
A0A2P6N0E4_9EUKA2.370e-539.71Uncharacterized protein n=1 Tax=Planoprotostelium ... [more]
A0A444URJ1_ACIRT2.950e-536.76Myb-related protein B n=1 Tax=Acipenser ruthenus T... [more]
UPI001B7F36CD8.580e-536.76v-myb avian myeloblastosis viral oncogene homolog-... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9981contigC-tenellus_contig9981:1756..2417 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog44056.XP_009041130.1
PFAMsMyb_DNA-binding
Model size261
Max annot lvl2759|Eukaryota
KEGG koko:K09420,ko:K09422
KEGG Pathwayko04151,ko05166,map04151,map05166
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue4.16e-08
EggNOG OGsCOG5147@1|root,KOG0048@2759|Eukaryota
DescriptionRNA polymerase II transcription regulator recruiting activity
Cds size150
COG categoryADK
BRITEko00000,ko00001,ko03000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.8531418-UTR-C-tenellus_contig9981:1755..18661680790209.8531418-UTR-C-tenellus_contig9981:1755..1866Choristocarpus tenellus KU2346UTRC-tenellus_contig9981 1756..1866 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.8646784-CDS-C-tenellus_contig9981:1866..19781680790209.8646784-CDS-C-tenellus_contig9981:1866..1978Choristocarpus tenellus KU2346CDSC-tenellus_contig9981 1867..1978 +
1680790209.8803399-CDS-C-tenellus_contig9981:2379..24171680790209.8803399-CDS-C-tenellus_contig9981:2379..2417Choristocarpus tenellus KU2346CDSC-tenellus_contig9981 2380..2417 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9981.4.1prot_C-tenellus_contig9981.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9981 1867..2417 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9981.4.1

>prot_C-tenellus_contig9981.4.1 ID=prot_C-tenellus_contig9981.4.1|Name=mRNA_C-tenellus_contig9981.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=50bp
MCTELASWIVIAGYLKQRFPVNPRSAKQCCERLYHHLDPEVSKNEWTADE
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mRNA from alignment at C-tenellus_contig9981:1756..2417+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9981.4.1 ID=mRNA_C-tenellus_contig9981.4.1|Name=mRNA_C-tenellus_contig9981.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=662bp|location=Sequence derived from alignment at C-tenellus_contig9981:1756..2417+ (Choristocarpus tenellus KU2346)
GGTACAACTTGTCACGTTGATTGATCTTCCTCTTCTATCCAACTCCCGTT
GTCTCGTCTTCTCGCAGGGGCATTTCATCGACCAAAAACGAGGATAATAT
CGGCCTTGTTGATGTGCACGGAGTTGGCTAGCTGGATCGTAATAGCGGGT
TATCTGAAGCAGCGGTTCCCTGTAAACCCAAGATCTGCAAAGCAGTGCTG
CGAGAGATTGTATCATCACCTGGGTGAGTCGGCGATTGGACATTCCTTTG
ATGTCCTTTCCGTTAACTCGCTACTCAAGTGAAAAACATGACTATGTTAG
CACCTTCCCACTCTAAGAACAAACCTCCCCAGCAGTCAGAGTTTGATCCC
ACGTGCAGGTAGACTACCCATCATGAACATCAAGCTGGACCAAGAGCAGT
GGTTTGGAAAGACACTAACTATTTTCCTGGGACCTTCGTCCAATAAACTT
TGAGCTACTAGGAATGATAACAAAGAGAATAACTTCAAAAGATGAGTAAG
TCACACCATAACTCTCCAACACTGAACATTATACACATATTTTGATGGTA
TAGGCCGTGTGAACTCTATCCTTCTTTCTCTCTCTCTCTTGTTCAACCTC
TCTTAACACCAACAACTCCATCAGATCCGGAAGTGAGCAAGAATGAGTGG
ACTGCTGACGAG
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Coding sequence (CDS) from alignment at C-tenellus_contig9981:1756..2417+

>mRNA_C-tenellus_contig9981.4.1 ID=mRNA_C-tenellus_contig9981.4.1|Name=mRNA_C-tenellus_contig9981.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=150bp|location=Sequence derived from alignment at C-tenellus_contig9981:1756..2417+ (Choristocarpus tenellus KU2346)
ATGTGCACGGAGTTGGCTAGCTGGATCGTAATAGCGGGTTATCTGAAGCA
GCGGTTCCCTGTAAACCCAAGATCTGCAAAGCAGTGCTGCGAGAGATTGT
ATCATCACCTGGATCCGGAAGTGAGCAAGAATGAGTGGACTGCTGACGAG
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