mRNA_C-tenellus_contig9977.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9977.2.1
Unique NamemRNA_C-tenellus_contig9977.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9977.2.1 vs. uniprot
Match: D7FQ17_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQ17_ECTSI)

HSP 1 Score: 128 bits (321), Expect = 1.040e-30
Identity = 89/220 (40.45%), Postives = 109/220 (49.55%), Query Frame = 1 
Query:    1 STIDHEQALALGRILTSRDEHEEAALAFRLASTA-------RPEGSAEAQLGLGLALRSSGRPTDAIEACTEAERLDPTLAAAHACLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXALA------------------MGGDPLAAYNLGVAWQLKGETEKSTEAFARSVELQSTLLAPRVNLGVQLLRNGHLDEAE 585
            +T+D  QAL LGR+L SR EHEEAAL +R+A++A       R  G  EAQ GLGLAL ++GRP +A+ AC EAERLDP L  A +C+                                                     A                     GGDP AAYNLGVAWQ KGETEK+  A++R+ +L  TL APRVNLG QLL++G L EAE
Sbjct:   61 TTVDLAQALGLGRVLLSRGEHEEAALVYRVAASAAAAVDSNREHG--EAQHGLGLALLATGRPEEALVACREAERLDPDLPTATSCIGAILTDAGDIAGALTALRHAADKTERGEVTAGLWRDAEGTADTIHGRLGAALLAAGEVDEAIEVLTRVELEARRAGGDPHAAYNLGVAWQTKGETEKAIVAYSRATDLAPTLAAPRVNLGAQLLQSGRLAEAE 278
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BLAST of mRNA_C-tenellus_contig9977.2.1 vs. uniprot
Match: A0A6H5KFC6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFC6_9PHAE)

HSP 1 Score: 81.6 bits (200), Expect = 1.690e-15
Identity = 48/87 (55.17%), Postives = 61/87 (70.11%), Query Frame = 1 
Query:    1 STIDHEQALALGRILTSRDEHEEAALAFRLASTA-------RPEGSAEAQLGLGLALRSSGRPTDAIEACTEAERLDPTLAAAHACL 240
            +T+D  QAL LGR+L SR EHEEAAL +R+A++A       R  G  EAQ GLGLAL ++GRP +A+ AC EAERLDP L  A +C+
Sbjct:   61 TTVDLAQALGLGRVLLSRGEHEEAALVYRVAASAAAAIDSNREHG--EAQHGLGLALLATGRPEEALAACREAERLDPDLPTATSCI 145
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9977.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQ17_ECTSI1.040e-3040.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KFC6_9PHAE1.690e-1555.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9977contigC-tenellus_contig9977:1315..2396 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FQ17
PFAMsC2,CHAT,Calpain_III,Glyco_transf_41,Peptidase_C2,TPR_16,TPR_8,WW
Model size585
Max annot lvl2759|Eukaryota
KEGG rclassRC00005,RC00059
KEGG koko:K08582,ko:K09667
KEGG ReactionR09304,R09676
KEGG Pathwayko00514,ko04931,map00514,map04931
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.7e-31
EggNOG OGsCOG3914@1|root,KOG0045@1|root,KOG0045@2759|Eukaryota,KOG4626@2759|Eukaryota
EC2.4.1.255
Descriptionprotein N-acetylglucosaminyltransferase activity
Cds size585
COG categoryO
CAZyGT41
BRITEko00000,ko00001,ko01000,ko01002,ko01003,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790209.512217-CDS-C-tenellus_contig9977:1314..14371680790209.512217-CDS-C-tenellus_contig9977:1314..1437Choristocarpus tenellus KU2346CDSC-tenellus_contig9977 1315..1437 -
1680790209.5252361-CDS-C-tenellus_contig9977:1934..23961680790209.5252361-CDS-C-tenellus_contig9977:1934..2396Choristocarpus tenellus KU2346CDSC-tenellus_contig9977 1935..2396 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9977.2.1prot_C-tenellus_contig9977.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9977 1315..2396 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9977.2.1

>prot_C-tenellus_contig9977.2.1 ID=prot_C-tenellus_contig9977.2.1|Name=mRNA_C-tenellus_contig9977.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=195bp
STIDHEQALALGRILTSRDEHEEAALAFRLASTARPEGSAEAQLGLGLAL
RSSGRPTDAIEACTEAERLDPTLAAAHACLGSLLSEAGDGVRAVTAFRRA
GALEPNSAEAAGRLGAALVGVGEADEATTVLARALAMGGDPLAAYNLGVA
WQLKGETEKSTEAFARSVELQSTLLAPRVNLGVQLLRNGHLDEAE
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mRNA from alignment at C-tenellus_contig9977:1315..2396-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9977.2.1 ID=mRNA_C-tenellus_contig9977.2.1|Name=mRNA_C-tenellus_contig9977.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1082bp|location=Sequence derived from alignment at C-tenellus_contig9977:1315..2396- (Choristocarpus tenellus KU2346)
AGTACCATCGACCATGAGCAAGCCTTGGCACTCGGTCGCATACTCACGAG
TCGGGACGAGCACGAAGAGGCCGCACTAGCCTTCCGCCTGGCTAGCACCG
CCCGCCCAGAGGGTTCTGCCGAAGCACAGCTGGGGCTCGGGCTCGCCCTC
AGATCCTCCGGTCGCCCTACCGATGCTATTGAGGCGTGCACAGAGGCGGA
GCGCCTCGATCCCACGCTTGCCGCTGCACATGCTTGCCTAGGTTCGCTCC
TCTCTGAGGCTGGGGATGGTGTGCGTGCTGTGACCGCATTTAGGCGGGCA
GGAGCTCTAGAACCGAACAGTGCAGAAGCGGCAGGGAGACTAGGGGCTGC
ACTTGTTGGTGTTGGAGAGGCAGATGAGGCAACCACAGTTCTGGCTAGGG
CATTGGCCATGGGTGGGGATCCCCTTGCTGCATACAATCTGGGGGTAGCC
TGGCAGTTGAAGGTCATACAGAGTCCCTTTGTATTGGACGGCTGGGGACG
GGGGAGAGATTTGGTATTTTTGCAGTATCCTTGCAGACATGTTGACTCTA
CACCTATTCAAAGAAACTGAGTGGTAAATGAAGTCTGAAGTTACTGGTGG
AAGTTTGAATCAGCTTACTGTGGGCTTGGTGCAGATTGAGTAGTGAGTTG
AGGACCATGGAGTCATGAAAGGGACAGGGACTGTTGGCACAGTGTAGGAC
CTTTTTGGTCTGCTCTTAGAAGTATGCAGTAGCCTATGTTAGTGATACTT
GGTTCCTCACTTTCTGCTGTGGCACTGTATTGCTTTTTCTGGACCATACT
TAACTATTCCGAAGAATCACAAGGAGCTGCTGTAAACAGTGCTCAATGTA
GACTGTACATTTCCATCAAATTAACAAACGCCCTGTTTTTCCTCTGCCCA
CTTTGCCATATCTCCCCTTACACAAAAACGTGTGGGTTAATGGACACATT
TTTTTGCAGGGGGAGACTGAAAAATCAACAGAGGCCTTTGCCCGCTCAGT
GGAACTGCAATCAACGCTCCTTGCCCCTAGGGTGAATTTGGGAGTGCAGC
TCCTGCGAAACGGTCACCTGGACGAGGCAGAA
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Coding sequence (CDS) from alignment at C-tenellus_contig9977:1315..2396-

>mRNA_C-tenellus_contig9977.2.1 ID=mRNA_C-tenellus_contig9977.2.1|Name=mRNA_C-tenellus_contig9977.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=585bp|location=Sequence derived from alignment at C-tenellus_contig9977:1315..2396- (Choristocarpus tenellus KU2346)
AGTACCATCGACCATGAGCAAGCCTTGGCACTCGGTCGCATACTCACGAG
TCGGGACGAGCACGAAGAGGCCGCACTAGCCTTCCGCCTGGCTAGCACCG
CCCGCCCAGAGGGTTCTGCCGAAGCACAGCTGGGGCTCGGGCTCGCCCTC
AGATCCTCCGGTCGCCCTACCGATGCTATTGAGGCGTGCACAGAGGCGGA
GCGCCTCGATCCCACGCTTGCCGCTGCACATGCTTGCCTAGGTTCGCTCC
TCTCTGAGGCTGGGGATGGTGTGCGTGCTGTGACCGCATTTAGGCGGGCA
GGAGCTCTAGAACCGAACAGTGCAGAAGCGGCAGGGAGACTAGGGGCTGC
ACTTGTTGGTGTTGGAGAGGCAGATGAGGCAACCACAGTTCTGGCTAGGG
CATTGGCCATGGGTGGGGATCCCCTTGCTGCATACAATCTGGGGGTAGCC
TGGCAGTTGAAGGGGGAGACTGAAAAATCAACAGAGGCCTTTGCCCGCTC
AGTGGAACTGCAATCAACGCTCCTTGCCCCTAGGGTGAATTTGGGAGTGC
AGCTCCTGCGAAACGGTCACCTGGACGAGGCAGAA
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