mRNA_C-tenellus_contig993.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig993.2.1
Unique NamemRNA_C-tenellus_contig993.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig993.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig993contigC-tenellus_contig993:6702..9842 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LDM0
PFAMsDMRL_synthase,EF-hand_1,EF-hand_5,EF-hand_6,EF-hand_7,EF-hand_8,Pkinase_Tyr
Model size3141
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.34e-07
EggNOG OGsKOG0032@1|root,KOG0032@2759|Eukaryota
Descriptionprotein serine/threonine kinase activity
Cds size234
COG categoryT
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.7509196-UTR-C-tenellus_contig993:6701..85341680790207.7509196-UTR-C-tenellus_contig993:6701..8534Choristocarpus tenellus KU2346UTRC-tenellus_contig993 6702..8534 -
1680790207.7746396-UTR-C-tenellus_contig993:8768..98421680790207.7746396-UTR-C-tenellus_contig993:8768..9842Choristocarpus tenellus KU2346UTRC-tenellus_contig993 8769..9842 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.765223-CDS-C-tenellus_contig993:8534..87681680790207.765223-CDS-C-tenellus_contig993:8534..8768Choristocarpus tenellus KU2346CDSC-tenellus_contig993 8535..8768 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig993.2.1prot_C-tenellus_contig993.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig993 8535..8768 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig993.2.1

>prot_C-tenellus_contig993.2.1 ID=prot_C-tenellus_contig993.2.1|Name=mRNA_C-tenellus_contig993.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=78bp
MSKAINSSPPLNSCFDVTRKQGFPVTSVSLFGTLDTTEPQGPSHEEGSMF
SESAGRRSPFTPRVRQGPGGNSSLVLG*
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mRNA from alignment at C-tenellus_contig993:6702..9842-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig993.2.1 ID=mRNA_C-tenellus_contig993.2.1|Name=mRNA_C-tenellus_contig993.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3141bp|location=Sequence derived from alignment at C-tenellus_contig993:6702..9842- (Choristocarpus tenellus KU2346)
ACAGTTGTCTTTTGGAGTGCTTCTTGGCAAGAAAGTGCAGGACTCACTTT
TGTGTCATACAGACGGATGTTATACACAGGAATTTGGGGGGGTTTACCTC
TTTGTTTCTTGGCACTTTTATGTCTTATTATCTTCACACAATGTTTCTCA
TGTGTTCGGGATTTCCAGTCCTTGAGGGCTAGCTGGATTACTTTCCCACT
TTCTGTGTGTAGTTTAGATTTGAGGCACGTATAAATGTACATGTGAGGTT
GCTGTTTTGTGTTGTAGTGCTATTTTTTGGGGGGAACAATTTGATGTGAT
TTCAGTTTCTATTGATGCATCGCTGTTCAGTGCACCTATTCGTTTTTCCT
TGTGATGTTGGTCTTGAGCATGTTTTGGACATGAGTTGTTATTGTCTCAC
AGCAAGTGCACGTCACGGTGGAGAGCTGTGTTTGGGCGGGCATCTTTTCT
CTAGGAGTGAGCTTGAATGAAGCATGGAGAGGTTGGCGAAATGGTCGAAG
AATTCAATTTGATCTTGGACCAGGTCCTGTTGATGGGTACTCTGATGTGT
TGCAAGGGTCTATTGATATGCTTTTGAAAAGTGGACAAGCTCTTCCAAGG
TCATGGTTTGCTCGCCATGACTCCCAATGTGTAACTGCTTCTTTTTCAAT
GCACTTGACTAGACAGCAATGACATGGTATTGTACTTGAGTACCAGAAGC
AATCCAGTCACACTACAATGTAATTTGAGGTAACTCTTGAGGTACCCCGT
ATATGAGGGGTGTTGTTGAGTATTGGGGTCCCTGTGACTGCCTGCTAGTA
CTCTTCACGGTTATGTGAACACGATTTGTGAACAGGGTTATGTGAACAGG
TGTTTGGCTCCTCTTTCACATCCATACCATCATACAGGGGTAGGAATAGG
AACGAGGTGTAAGGCAGAAGTTTTGAATGTCTCTAGATTGCCAGAAGGGC
TGAAATAGATCCCCTTCTAAAATAGGGTGGTTCTCTCTATCAGGAAACAC
GTGTAGAGTTCAGTGTAACAGTCCCTCCTCTTTTTAACTTAGTCGATTGC
TATGCCCCATTTGCGTGCCTGCAAATGAGTAAGGCAATCAATTCTTCTCC
CCCCCTCAATTCTTGTTTTGATGTAACCCGAAAACAGGGCTTCCCAGTGA
CCTCAGTGTCCCTCTTTGGGACCCTGGACACTACAGAACCACAAGGGCCT
TCCCATGAAGAAGGCAGCATGTTCTCAGAGTCTGCTGGCCGCCGATCCCC
TTTCACCCCAAGGGTGCGACAGGGGCCAGGAGGTAACAGCAGCCTTGTGC
TAGGCTGAGCCAGACTTGTTGCCCTTCTCTTCCTGTGGGTATGGGGGGGG
GGAGTTGTAGCCTAATATACTACTGGCCAATGAGATATATGATTTCAAGG
TATAATGGGAGCACATATTGAGTTGAGGTGCCAACCTCTTTTCCACGAAA
ATAGGGAGATCATGTTAGTGGGTTTCTTTTGTTTGTGTGAGTTTTCTTTG
AAGGAGATGTAGGGTAGGAGTGGAGGGGTGCAGTGTCATTCTTACACACA
TGCAAATACTTTTCTGTGAGGGTTAATGCTGGCAGTAAACAGCATGTGTT
GTGTTGTGTGGAACAGGATTGTTGCGCCTCCCTATGGGGAAGGCATAATG
GGGGTCTGGGGGTTTGGGAGGGACTCTGTGGGGTGCTTCCAACTACCTTG
GTGCTGTACAGGTATGGAAGATTCAAGGGGTTCTTCGTCAAGGGGATAGA
ATAGGAGTCTCTTGGTTGAGTACTCAGACCCTCGGGTCGCCTATGTGCTG
TCACTTAAAAGTATAGGGGTCGCTTTTAACAAATGTTGGGGATAAAAAGA
AGGCTATTGAATTTGCTTGCCTCTAGGCACAGTGCAGAGAAAAAATTTGA
AATGTAAAGTAAAAGGGGTTGATGGCAGTGCTCATGGGGGTGAGTGAAAA
TTGTTGGTAAACAGTGGTAGATATTAATTACGCCAGGGCTTAGTGCCATG
TGATGGTTGCAAGGACCTTAGCAGCATGGAGACAAGCTAGCGTTTCTGCC
AAGCAAAGGGGGCATCTGTTGATACTTATCTATTCCTCCTGCCACTGTTG
GCTACTACTTAAAGTTGGTAGAAGTCAGTGCCAGGATGAGGAATTGGTCA
TTACCTTTCTCGTACATATTTTGCCCACACTTTGGAGTAAAGAATTTGTC
ATGTGCTGTTGCATGAAAGTGTAATGTGGTGGGAAGAAGCTCCCAGTGCA
AATTACCTTTAGAAGGTATCATGTCCTTGCTAGGACTGGTTATTGACAGA
GGAGGTACTTGAGGACCATCCTTCCCTCGTCTCCAAGTGCGCTGCACCCA
CCTTCACACCAGACAGAGATAGCCCAACAATTACGAAAATTTTGTAGTGG
AGGGAAGCACCCCGCTTTGGCGGGAGTGAACATTCAGCTGCTTGGCTGGA
AAGTGCCCGTATATAGGGATGGTTCAACTGTCTCTTTGGGTTTCGTTGTC
TTGAATATAGCTACAGTACAGTGGTAGCGGGAGGTACATATTACGTAGAA
GTAGGCAACATTTTTTTTTGCTGGTTTTGGCAATGATATTTGCATTTTCC
TTGTTTCTGGTCGCTTGTCGTAGTACTTGTTGTTTTGTTCGCTCTTGTTT
GTTCTTTTGTTTCCTTGCTTTTGATTGGGTGCATGTCACTGCCTCAATCT
TCCATACGCAGGATGTCCTTTCATGCTTGAGGAGGCGAGCATGGACAGAA
TTATGATAGGGATAATAACAGGGTATGCATCATATTACAAAAAATTAGTT
TCATAATTCATACCTGCATAGAGCTACATAATATTTTATTACTTTGTACA
ATGCTTGGTAAGATAAGTTGAAATTGAGGATGCAGTACGATTACGTCCTG
TTCTTAGCTTTAATGTAATCCAAGGTAGTGTGCTGTCCCTTTCCATCATG
TACGTGGCAAGGAACATGTTGTGTGTCTAGTACTGTGTCCCATACTTCTC
AGTCGTGCAAATGGCACCTATGATCCTATTGTAACATTTAAATACAGTGT
CGAGAAATGCCCTTCAAACTAAGCAACCACCAGTGTGATCGACCCCTTTT
CCTTCCCGGCTCGTCCTAGCTAGCCAATTCTGTCTCTACCC
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Coding sequence (CDS) from alignment at C-tenellus_contig993:6702..9842-

>mRNA_C-tenellus_contig993.2.1 ID=mRNA_C-tenellus_contig993.2.1|Name=mRNA_C-tenellus_contig993.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=234bp|location=Sequence derived from alignment at C-tenellus_contig993:6702..9842- (Choristocarpus tenellus KU2346)
ATGAGTAAGGCAATCAATTCTTCTCCCCCCCTCAATTCTTGTTTTGATGT
AACCCGAAAACAGGGCTTCCCAGTGACCTCAGTGTCCCTCTTTGGGACCC
TGGACACTACAGAACCACAAGGGCCTTCCCATGAAGAAGGCAGCATGTTC
TCAGAGTCTGCTGGCCGCCGATCCCCTTTCACCCCAAGGGTGCGACAGGG
GCCAGGAGGTAACAGCAGCCTTGTGCTAGGCTGA
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