mRNA_C-tenellus_contig9927.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.550e-30 Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1 Query: 49 RTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 R D N PSV+ P+R +GSL+W +++TR DIANAVR VA+Y S PK+ HWRA IL Y S G+SF G + L +ADA YA DRR V+GG +M AG AI+W SK Q+ V LS+T++EY Sbjct: 148 RLWDSDVNEPSVEY--PFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEY 279
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KF97_LASNI (Putative retrotransposon (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KF97_LASNI) HSP 1 Score: 122 bits (307), Expect = 1.420e-29 Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 1 Query: 1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 FGM AK+ SVP D L D PYR+AVGSL++ ++++R DIA AV V+K+ +N ++HW+AVK I++YL G+ + G +CEL ++DA YAGD RR TG A + A +SW S+ Q++V++S+TESEY Sbjct: 861 FGMKNAKEVSVPADPHTVLYPVVEYREKDCKVPYRKAVGSLMFLAIVSRPDIAYAVNNVSKFLNNYDISHWQAVKRIISYLTDTIGQGIEYRGDGGKCELMGFSDADYAGDIGTRRSTTGYAFLMANGLVSWSSQRQKLVSMSTTESEY 1009
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KFA6_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFA6_LASNI) HSP 1 Score: 117 bits (292), Expect = 2.810e-29 Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 F M AK SVP D+ L +E+ + P+REAVGSL++ +VMTR D+A AV V+KY +N +HW+AVK I YL G+++ +E +L +ADA YAGD + RR TG A FA I+W SK Q +V LS+TE+EY Sbjct: 16 FKMSEAKPVSVPADVHVCLKPAEDTEKRLAV-PFREAVGSLMFLAVMTRPDLAYAVNNVSKYLANLDESHWQAVKRIFKYLKGTTRFGITYRAGGSESQLIGFADADYAGDIETRRSTTGYAFCFANGIITWCSKRQPLVTLSTTEAEY 163
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE) HSP 1 Score: 119 bits (297), Expect = 3.090e-29 Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 1 Query: 25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 RSVP +S L D EN S D P+RE VGSL+W + TR DIANAVR VA+Y ++PK+ HW+A IL Y+ +G++F G T + + DA YA DRR V+GG +M G ++W S+ Q+ V LS+TE+EY Sbjct: 131 RSVPLPVSVKLTDFDENEASAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 271
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KDE2_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDE2_LASNI) HSP 1 Score: 121 bits (304), Expect = 3.660e-29 Identity = 69/150 (46.00%), Postives = 96/150 (64.00%), Query Frame = 1 Query: 1 FGMDGAKKRSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 FGM AK SVP D L +EN V KI PYREAVGSLI+ +V++R DI+ AV V+K+ +N +HW+AVK I+AYL G+ + ++ CEL ++DA +A D + RR TG A + A +SW S+ Q++V+LS+TESEY Sbjct: 1026 FGMQNAKGLSVPADPHTLLYPVTENRTEVCKI-PYREAVGSLIFLAVVSRPDISYAVNNVSKFLNNHDTSHWQAVKRIIAYLVNTIGYGIEYRRNESGCELIGFSDADFASDIETRRSTTGYAFLIANGLVSWSSQRQKLVSLSTTESEY 1174
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A1Y1KC03_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KC03_PHOPY) HSP 1 Score: 116 bits (290), Expect = 5.690e-29 Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 1 Query: 1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 FGM+ + + P D+S + SE P +D P+REAVGSL++ S+ TR DI AV V++ + P+++ WRAVK I YL GL + +L AY+DA YAGD + RR TG +AG AI+W+S+ QR V LS+TE+EY Sbjct: 21 FGMENSHAVATPCDIS--AEHSEPNPELDATVPFREAVGSLMYLSIATRPDITYAVSVVSEALAKPRMSDWRAVKRIFRYLKGTLEYGLLYQPNYNVGKLEAYSDADYAGDVQTRRSRTGMVCKYAGGAITWLSRKQRCVVLSTTEAEY 167
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE) HSP 1 Score: 120 bits (302), Expect = 6.410e-29 Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1 Query: 49 RTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 R D N PSV+ P+R +GSL+W +++TR DIANAVR VA+Y S PK+ HWRA IL Y S G+SF G + L +ADA YA DRR V+GG +M AG AI+W SK Q+ V LS+T++EY Sbjct: 452 RLWDSDVNEPSVEY--PFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEY 583
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE) HSP 1 Score: 117 bits (292), Expect = 6.520e-29 Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 RSVP +S L D EN D P+RE VGSL+W + TR DIANAVR VA+Y ++PK+ HW+A IL Y+ +G++F G T + + DA YA DRR V+GG +M G ++W S+ Q+ V LS+TE+EY Sbjct: 76 RSVPLPVSVKLTDFDENEACAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 216
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A1Y1KNM9_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KNM9_PHOPY) HSP 1 Score: 119 bits (298), Expect = 2.350e-28 Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 1 Query: 1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 FGM+ S P + L +S+ P +D+ PYREAVGSL++ S+ TR DIA AV +V++ NP ++W+AVK I YL +VG+ + EL AY+DA +AGD K R +G +AG AI+W S+ QR VALS+TESEY Sbjct: 1070 FGMENCNSVSTPCEKIAQLFESD--PKLDEKVPYREAVGSLMYLSIATRPDIAYAVNKVSESLENPTFSNWQAVKRIFRYLKGSANVGIVYKPKYKAGELEAYSDADFAGDHKTRLSRSGAVCKYAGGAITWASRKQRSVALSTTESEY 1216
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE) HSP 1 Score: 117 bits (292), Expect = 3.710e-28 Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1 Query: 25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447 RSVP +S L D EN D P+RE VGSL+W + TR DIANAVR VA+Y ++PK+ HW+A IL Y+ +G++F G T + + DA YA DRR V+GG +M G ++W S+ Q+ V LS+TE+EY Sbjct: 193 RSVPLPVSVKLTDFDENEACAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 333 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9927.2.1 >prot_C-tenellus_contig9927.2.1 ID=prot_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp MDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIback to top mRNA from alignment at C-tenellus_contig9927:5202..5648+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9927.2.1 ID=mRNA_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=447bp|location=Sequence derived from alignment at C-tenellus_contig9927:5202..5648+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9927:5202..5648+ >mRNA_C-tenellus_contig9927.2.1 ID=mRNA_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig9927:5202..5648+ (Choristocarpus tenellus KU2346)back to top |