mRNA_C-tenellus_contig9927.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9927.2.1
Unique NamemRNA_C-tenellus_contig9927.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JWK8_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWK8_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.550e-30
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   49 RTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            R  D   N PSV+   P+R  +GSL+W +++TR DIANAVR VA+Y S PK+ HWRA   IL Y     S G+SF  G  +   L  +ADA YA    DRR V+GG +M AG AI+W SK Q+ V LS+T++EY
Sbjct:  148 RLWDSDVNEPSVEY--PFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEY 279          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KF97_LASNI (Putative retrotransposon (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KF97_LASNI)

HSP 1 Score: 122 bits (307), Expect = 1.420e-29
Identity = 64/149 (42.95%), Postives = 93/149 (62.42%), Query Frame = 1
Query:    1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            FGM  AK+ SVP D    L         D   PYR+AVGSL++ ++++R DIA AV  V+K+ +N  ++HW+AVK I++YL      G+ + G   +CEL  ++DA YAGD   RR  TG A + A   +SW S+ Q++V++S+TESEY
Sbjct:  861 FGMKNAKEVSVPADPHTVLYPVVEYREKDCKVPYRKAVGSLMFLAIVSRPDIAYAVNNVSKFLNNYDISHWQAVKRIISYLTDTIGQGIEYRGDGGKCELMGFSDADYAGDIGTRRSTTGYAFLMANGLVSWSSQRQKLVSMSTTESEY 1009          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KFA6_LASNI (Integrase core domain protein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KFA6_LASNI)

HSP 1 Score: 117 bits (292), Expect = 2.810e-29
Identity = 67/149 (44.97%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            F M  AK  SVP D+   L  +E+      + P+REAVGSL++ +VMTR D+A AV  V+KY +N   +HW+AVK I  YL      G+++    +E +L  +ADA YAGD + RR  TG A  FA   I+W SK Q +V LS+TE+EY
Sbjct:   16 FKMSEAKPVSVPADVHVCLKPAEDTEKRLAV-PFREAVGSLMFLAVMTRPDLAYAVNNVSKYLANLDESHWQAVKRIFKYLKGTTRFGITYRAGGSESQLIGFADADYAGDIETRRSTTGYAFCFANGIITWCSKRQPLVTLSTTEAEY 163          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5L4G9_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4G9_9PHAE)

HSP 1 Score: 119 bits (297), Expect = 3.090e-29
Identity = 65/143 (45.45%), Postives = 88/143 (61.54%), Query Frame = 1
Query:   25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            RSVP  +S  L D  EN  S D   P+RE VGSL+W +  TR DIANAVR VA+Y ++PK+ HW+A   IL Y+     +G++F  G  T   +  + DA YA    DRR V+GG +M  G  ++W S+ Q+ V LS+TE+EY
Sbjct:  131 RSVPLPVSVKLTDFDENEASAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 271          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A0J7KDE2_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KDE2_LASNI)

HSP 1 Score: 121 bits (304), Expect = 3.660e-29
Identity = 69/150 (46.00%), Postives = 96/150 (64.00%), Query Frame = 1
Query:    1 FGMDGAKKRSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            FGM  AK  SVP D    L   +EN   V KI PYREAVGSLI+ +V++R DI+ AV  V+K+ +N   +HW+AVK I+AYL      G+ +   ++ CEL  ++DA +A D + RR  TG A + A   +SW S+ Q++V+LS+TESEY
Sbjct: 1026 FGMQNAKGLSVPADPHTLLYPVTENRTEVCKI-PYREAVGSLIFLAVVSRPDISYAVNNVSKFLNNHDTSHWQAVKRIIAYLVNTIGYGIEYRRNESGCELIGFSDADFASDIETRRSTTGYAFLIANGLVSWSSQRQKLVSLSTTESEY 1174          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A1Y1KC03_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KC03_PHOPY)

HSP 1 Score: 116 bits (290), Expect = 5.690e-29
Identity = 65/149 (43.62%), Postives = 91/149 (61.07%), Query Frame = 1
Query:    1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            FGM+ +   + P D+S   + SE  P +D   P+REAVGSL++ S+ TR DI  AV  V++  + P+++ WRAVK I  YL      GL +       +L AY+DA YAGD + RR  TG    +AG AI+W+S+ QR V LS+TE+EY
Sbjct:   21 FGMENSHAVATPCDIS--AEHSEPNPELDATVPFREAVGSLMYLSIATRPDITYAVSVVSEALAKPRMSDWRAVKRIFRYLKGTLEYGLLYQPNYNVGKLEAYSDADYAGDVQTRRSRTGMVCKYAGGAITWLSRKQRCVVLSTTEAEY 167          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JR13_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JR13_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 6.410e-29
Identity = 66/134 (49.25%), Postives = 85/134 (63.43%), Query Frame = 1
Query:   49 RTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            R  D   N PSV+   P+R  +GSL+W +++TR DIANAVR VA+Y S PK+ HWRA   IL Y     S G+SF  G  +   L  +ADA YA    DRR V+GG +M AG AI+W SK Q+ V LS+T++EY
Sbjct:  452 RLWDSDVNEPSVEY--PFRALIGSLLWVALLTRPDIANAVRAVARYCSEPKLIHWRAALGILGYAVRTSSFGISFQRGTVSGFSLITFADADYASRAADRRSVSGGVVMCAGGAIAWFSKTQKCVTLSTTQAEY 583          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5KP70_9PHAE (Uncharacterized protein n=4 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP70_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 6.520e-29
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            RSVP  +S  L D  EN    D   P+RE VGSL+W +  TR DIANAVR VA+Y ++PK+ HW+A   IL Y+     +G++F  G  T   +  + DA YA    DRR V+GG +M  G  ++W S+ Q+ V LS+TE+EY
Sbjct:   76 RSVPLPVSVKLTDFDENEACAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 216          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A1Y1KNM9_PHOPY (Uncharacterized protein (Fragment) n=1 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1KNM9_PHOPY)

HSP 1 Score: 119 bits (298), Expect = 2.350e-28
Identity = 67/149 (44.97%), Postives = 92/149 (61.74%), Query Frame = 1
Query:    1 FGMDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            FGM+     S P +    L +S+  P +D+  PYREAVGSL++ S+ TR DIA AV +V++   NP  ++W+AVK I  YL    +VG+ +       EL AY+DA +AGD K R   +G    +AG AI+W S+ QR VALS+TESEY
Sbjct: 1070 FGMENCNSVSTPCEKIAQLFESD--PKLDEKVPYREAVGSLMYLSIATRPDIAYAVNKVSESLENPTFSNWQAVKRIFRYLKGSANVGIVYKPKYKAGELEAYSDADFAGDHKTRLSRSGAVCKYAGGAITWASRKQRSVALSTTESEY 1216          
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Match: A0A6H5JEF2_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=7 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEF2_9PHAE)

HSP 1 Score: 117 bits (292), Expect = 3.710e-28
Identity = 64/143 (44.76%), Postives = 87/143 (60.84%), Query Frame = 1
Query:   25 RSVPHDLSRTL-DKSENLPSVDKITPYREAVGSLIWASVMTRLDIANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFG-GFDTECELSAYADASYAGDWKDRR*VTGGAIMFAGRAISWMSKVQRVVALSSTESEY 447
            RSVP  +S  L D  EN    D   P+RE VGSL+W +  TR DIANAVR VA+Y ++PK+ HW+A   IL Y+     +G++F  G  T   +  + DA YA    DRR V+GG +M  G  ++W S+ Q+ V LS+TE+EY
Sbjct:  193 RSVPLPVSVKLTDFDENEACAD--VPFRELVGSLMWLATQTRPDIANAVRAVARYCASPKMVHWKAALGILGYVRRTSWMGITFERGVVTGMSMQVFVDADYASKATDRRSVSGGLVMCGGGCVTWFSRTQKCVTLSTTEAEY 333          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9927.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JWK8_9PHAE6.550e-3049.25Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KF97_LASNI1.420e-2942.95Putative retrotransposon (Fragment) n=1 Tax=Lasius... [more]
A0A0J7KFA6_LASNI2.810e-2944.97Integrase core domain protein n=1 Tax=Lasius niger... [more]
A0A6H5L4G9_9PHAE3.090e-2945.45Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A0J7KDE2_LASNI3.660e-2946.00Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A1Y1KC03_PHOPY5.690e-2943.62Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A6H5JR13_9PHAE6.410e-2949.25Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KP70_9PHAE6.520e-2944.76Uncharacterized protein n=4 Tax=Ectocarpus sp. CCA... [more]
A0A1Y1KNM9_PHOPY2.350e-2844.97Uncharacterized protein (Fragment) n=1 Tax=Photinu... [more]
A0A6H5JEF2_9PHAE3.710e-2844.76Reverse transcriptase Ty1/copia-type domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9927contigC-tenellus_contig9927:5202..5648 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog7029.ACYPI067959-PA
Model size447
Max annot lvl33154|Opisthokonta
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.2e-18
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3A5XY@33154|Opisthokonta
Descriptiontransposition, RNA-mediated
Cds size345
COG categoryL
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.5595329-UTR-C-tenellus_contig9927:5201..52071680790207.5595329-UTR-C-tenellus_contig9927:5201..5207Choristocarpus tenellus KU2346UTRC-tenellus_contig9927 5202..5207 +
1680790207.5797594-UTR-C-tenellus_contig9927:5552..56481680790207.5797594-UTR-C-tenellus_contig9927:5552..5648Choristocarpus tenellus KU2346UTRC-tenellus_contig9927 5553..5648 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790207.5699143-CDS-C-tenellus_contig9927:5207..55521680790207.5699143-CDS-C-tenellus_contig9927:5207..5552Choristocarpus tenellus KU2346CDSC-tenellus_contig9927 5208..5552 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9927.2.1prot_C-tenellus_contig9927.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9927 5208..5552 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9927.2.1

>prot_C-tenellus_contig9927.2.1 ID=prot_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=115bp
MDGAKKRSVPHDLSRTLDKSENLPSVDKITPYREAVGSLIWASVMTRLDI
ANAVREVAKYSSNPKVTHWRAVKCILAYLNTCPSVGLSFGGFDTECELSA
YADASYAGDWKDRR*
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mRNA from alignment at C-tenellus_contig9927:5202..5648+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9927.2.1 ID=mRNA_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=447bp|location=Sequence derived from alignment at C-tenellus_contig9927:5202..5648+ (Choristocarpus tenellus KU2346)
TTTGGTATGGATGGGGCAAAGAAGAGGTCGGTACCCCATGATCTCTCAAG GACTCTAGACAAGAGTGAGAATCTTCCAAGTGTTGATAAAATAACACCGT ACAGAGAGGCAGTTGGTAGTTTGATATGGGCATCTGTTATGACCAGGCTT GATATTGCAAATGCAGTTCGTGAAGTTGCCAAGTACAGTAGTAATCCCAA AGTCACACATTGGCGTGCAGTGAAATGCATTTTAGCATATTTGAATACAT GTCCCAGTGTTGGATTGAGTTTTGGTGGTTTTGATACTGAGTGTGAGTTG AGTGCGTATGCTGATGCTAGTTATGCTGGAGACTGGAAAGATCGTAGATA AGTGACTGGAGGAGCAATTATGTTTGCAGGAAGAGCAATATCTTGGATGT CAAAGGTACAAAGAGTTGTAGCTCTGTCTTCCACAGAGAGTGAATAC
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Coding sequence (CDS) from alignment at C-tenellus_contig9927:5202..5648+

>mRNA_C-tenellus_contig9927.2.1 ID=mRNA_C-tenellus_contig9927.2.1|Name=mRNA_C-tenellus_contig9927.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=345bp|location=Sequence derived from alignment at C-tenellus_contig9927:5202..5648+ (Choristocarpus tenellus KU2346)
ATGGATGGGGCAAAGAAGAGGTCGGTACCCCATGATCTCTCAAGGACTCT
AGACAAGAGTGAGAATCTTCCAAGTGTTGATAAAATAACACCGTACAGAG
AGGCAGTTGGTAGTTTGATATGGGCATCTGTTATGACCAGGCTTGATATT
GCAAATGCAGTTCGTGAAGTTGCCAAGTACAGTAGTAATCCCAAAGTCAC
ACATTGGCGTGCAGTGAAATGCATTTTAGCATATTTGAATACATGTCCCA
GTGTTGGATTGAGTTTTGGTGGTTTTGATACTGAGTGTGAGTTGAGTGCG
TATGCTGATGCTAGTTATGCTGGAGACTGGAAAGATCGTAGATAA
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