mRNA_C-tenellus_contig9869.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9869.3.1
Unique NamemRNA_C-tenellus_contig9869.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig9869.3.1 vs. uniprot
Match: A0A6H5KV46_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KV46_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 1.170e-20
Identity = 48/92 (52.17%), Postives = 66/92 (71.74%), Query Frame = 2 
Query:  362 YLIAAAGIKAMTEHMQDIERGRNLKQRIASWADRAGLDLPSVEPALGFLDVLGVSRATVYKSLMESALQTLLDMIPQLDKEVLVALLLDSFR 637
            YL+  AG + +T ++QD+ +GR    R+  W + AGL  PSV+ ALGFLD+LGVSRA+VYK L+E +L+ LLD IP L + VL+ LL DSF+
Sbjct:   72 YLVGMAGHRTLTSYIQDLSKGRRWTDRVRGWGEEAGLAEPSVKLALGFLDILGVSRASVYKQLLEDSLRVLLDQIPHLPENVLLDLLTDSFK 163
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9869.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KV46_9PHAE1.170e-2052.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9869contigC-tenellus_contig9869:3487..5435 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size855
Hectar predicted targeting categoryother localisation
Exons2
Cds size438
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.1707404-UTR-C-tenellus_contig9869:3486..36881680790205.1707404-UTR-C-tenellus_contig9869:3486..3688Choristocarpus tenellus KU2346UTRC-tenellus_contig9869 3487..3688 +
1680790205.20899-UTR-C-tenellus_contig9869:5220..54351680790205.20899-UTR-C-tenellus_contig9869:5220..5435Choristocarpus tenellus KU2346UTRC-tenellus_contig9869 5221..5435 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790205.184063-CDS-C-tenellus_contig9869:3688..40061680790205.184063-CDS-C-tenellus_contig9869:3688..4006Choristocarpus tenellus KU2346CDSC-tenellus_contig9869 3689..4006 +
1680790205.1949675-CDS-C-tenellus_contig9869:5100..52201680790205.1949675-CDS-C-tenellus_contig9869:5100..5220Choristocarpus tenellus KU2346CDSC-tenellus_contig9869 5101..5220 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9869.3.1prot_C-tenellus_contig9869.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9869 3689..5220 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9869.3.1

>prot_C-tenellus_contig9869.3.1 ID=prot_C-tenellus_contig9869.3.1|Name=mRNA_C-tenellus_contig9869.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=146bp
MTRSEANPRRGSRTRHMEQSDGLAGKNRSALSALPPESQTEETARVDSTS
GKTYLIAAAGIKAMTEHMQDIERGRNLKQRIASWADRAGLDLPSVEPALG
FLDVLGVSRATVYKSLMESALQTLLDMIPQLDKEVLVALLLDSFR*
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mRNA from alignment at C-tenellus_contig9869:3487..5435+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9869.3.1 ID=mRNA_C-tenellus_contig9869.3.1|Name=mRNA_C-tenellus_contig9869.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1949bp|location=Sequence derived from alignment at C-tenellus_contig9869:3487..5435+ (Choristocarpus tenellus KU2346)
CCTCAACTCAACAAACACTCCCTCAAGTTAGCCCTTGCTCGTTGATGAGA
GGGCTGGAAAAGAGTTGGAAAGGGCAGTAAGCCGACTCTCGTAGTGGCCG
TAGTGGGGTGACACGCGAGAGGAACGCTCTCTGTGAAACACGCTAGGCCA
GGTAAGGTCAACCGAGTTGTGAACTTCTTTTTTGGGACAAGGGGAGGATA
ACATGACTCGGAGTGAAGCGAATCCTCGGCGTGGGTCCCGTACCAGACAT
ATGGAGCAGAGCGATGGTTTAGCGGGAAAAAATAGATCTGCCTTGTCGGC
ACTCCCACCTGAGTCACAAACTGAAGAAACAGCTCGTGTGGACTCGACTT
CTGGGAAGACCTACTTGATCGCAGCGGCGGGTATAAAAGCTATGACAGAA
CACATGCAGGACATAGAGAGGGGCCGCAACCTGAAGCAGCGTATAGCCTC
ATGGGCGGACAGAGCCGGACTTGACCTTCCTTCTGTGGAACCTGCTCTCG
GTTTTCTTGATGTTCTTGGGGTAAGCCGGTTCGTGGAGGTTGGTGTAAAG
TGAGTCAAAGTATGTGTCGCATATGTCATACACTGTAGCAATGATTGAAG
GGGCAGGGCATCATCCTAGTGCCACTGATTTTCCCTTGCTGCACCGTTCA
GAAAACTGAGACTTGTGAAAGAACGAGCTTTCCGTAGAAGGTCCTCATAC
TGTCGCAAAATGCTATCGAATACTTGCACATCAGCCATGTAACACGATTT
GTTGCCGAGCGAAAACATTCAAGGCCCCAGAAATGCATTTGCTACTCACG
CAGCATGCACTTGTGGATGCTACCAATTGTGTAAGGGAGGGAAAATGCAA
CTTTTCACACAGGATGCTTCTTTCTTCCGGATTCCTCAGTAGCTGCATCA
CAAAAGTACAGGTGTTGGGTAGATATCTTTGCAAGTGTTGGTCCTATCAG
CCAACATAGTTGGATGCCAAGTGTAAATGTGAACATTCACTTCTAACAAC
CAACTGAGCATGGTTTGTAGAGATGGCGATCTTGAGGCCACCAGTTCTTT
ATACATAGGAACTCCACTGGCTTCAGTGAGTACTTAAACTAATACATGCC
CCTAATGGATACAAGCAGCACATGTCCTATTACTTTGGAGTTGCATTCCT
GTGGTTCACAAATTTTTTTAAGGGGTCTACTCCTGTCTATAGCATTTCGA
GTTATTTGAAGTGTTATCACCATTGAATATTGAATAGAGATGCTTGCAGA
AACGTTTACCATTCAGTAACTTGGCGACCTGACGTCAATGATGCACCACT
CCTGCCAATGCCTTGACTCCAGTATGTCATGCATAAGAGTTGACCAGACC
CATGACAATAGACCAAATGGGTGTGGTAGCTTATCTGCTTGCCTGTCATC
CCCTCAACAATACACTGCTTATTGTTCTCAGCCCTTCCTGATGGCCTGTT
AGAGTCAGTTGAAGATGTAACCTAGCTGAGGGTCATTCCCTCTGGTGCTG
AGACAGAGGTCCTCAAGTGGGGAGTTCAAACCCTCACCATCCTCACATTT
ATATTTCTTTCTGTTTTTTCACACCAGAAAGCTCTTGTTGCCCCCTTTCA
TTGTCTGAGACAAGGTGAGTCGTGCAACAGTGTACAAGAGCCTTATGGAG
AGTGCACTGCAGACCCTTCTTGACATGATACCTCAGTTGGACAAGGAGGT
TCTAGTTGCCCTGCTGCTTGATTCATTCCGGTGAGTCAAACGCACATTAT
CTACAGATGCATGGATGTCAAATGCATGGATGTCAAATGCATGGATGTCA
AATGCATGCACTGAGCAACACCCAACACACCCCCAATCAACCTGGTTAAC
CATACCTGTGTACCAGGTATGAGGGGTTGATAGGTGCATGGAGCACGCTC
CTTTCCTCCCCCCTTCCAGCAATCGCAGTGGCCTGTATGTATGTACTCG
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Coding sequence (CDS) from alignment at C-tenellus_contig9869:3487..5435+

>mRNA_C-tenellus_contig9869.3.1 ID=mRNA_C-tenellus_contig9869.3.1|Name=mRNA_C-tenellus_contig9869.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=438bp|location=Sequence derived from alignment at C-tenellus_contig9869:3487..5435+ (Choristocarpus tenellus KU2346)
ATGACTCGGAGTGAAGCGAATCCTCGGCGTGGGTCCCGTACCAGACATAT
GGAGCAGAGCGATGGTTTAGCGGGAAAAAATAGATCTGCCTTGTCGGCAC
TCCCACCTGAGTCACAAACTGAAGAAACAGCTCGTGTGGACTCGACTTCT
GGGAAGACCTACTTGATCGCAGCGGCGGGTATAAAAGCTATGACAGAACA
CATGCAGGACATAGAGAGGGGCCGCAACCTGAAGCAGCGTATAGCCTCAT
GGGCGGACAGAGCCGGACTTGACCTTCCTTCTGTGGAACCTGCTCTCGGT
TTTCTTGATGTTCTTGGGGTGAGTCGTGCAACAGTGTACAAGAGCCTTAT
GGAGAGTGCACTGCAGACCCTTCTTGACATGATACCTCAGTTGGACAAGG
AGGTTCTAGTTGCCCTGCTGCTTGATTCATTCCGGTGA
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