mRNA_C-tenellus_contig9786.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9786.2.1
Unique NamemRNA_C-tenellus_contig9786.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: D8LH96_ECTSI (Intraflagellar transport protein 140 puative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LH96_ECTSI)

HSP 1 Score: 338 bits (866), Expect = 5.860e-103
Identity = 161/268 (60.07%), Postives = 202/268 (75.37%), Query Frame = 1
Query:    1 MNSLFFDYPCKAANSDTV-VPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRR-NSTITAAVFCPVPAQTTEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLREV 798
            MNSLFFDYPCK    D     + DLAWCKSEN+LACA++ G +A Y+DEGAE+++A I R N QR++ M+WSPRG++L +GW DGQVS WNVMEPL++  S+C C+N  +H+ P+                  G++C+WK D RGN+ PS+QYRR NS ITAAVFC  P+ + + +AQ FS SFFF+TE+G VCYADDLGHC++VQQLTS VDRL+FYE  RRLV+ITRSLLM  QL VGED  VSQFMKVKLSVSA+S++E+GLREV
Sbjct:    1 MNSLFFDYPCKGDGRDERGAVTTDLAWCKSENLLACALDSGRVAVYQDEGAEVVAASIARGNRQRASVMDWSPRGRLLAIGWVDGQVSTWNVMEPLQEDTSICACSNQGVHKQPIXXXXXXXXXXXXXXXXKGGVICVWKADARGNMAPSVQYRRKNSAITAAVFCGSPSHSADALAQAFSPSFFFSTESGAVCYADDLGHCSEVQQLTSPVDRLMFYEAARRLVVITRSLLMT-QLQVGEDGRVSQFMKVKLSVSASSVRETGLREV 267          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A835YKN9_9STRA (Putative intraflagellar transport protein 140 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YKN9_9STRA)

HSP 1 Score: 277 bits (709), Expect = 9.650e-82
Identity = 141/268 (52.61%), Postives = 181/268 (67.54%), Query Frame = 1
Query:    1 MNSLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGN-VTPSLQYRRNSTITAAVFC-PVPAQTTEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLREV 798
            M+SLFFDY C   ++        L WCKSE +LA A E G I FY+DEG    +A I R+ +  +  M+W  +GK L VGW DGQ+S+W+V + ++ S + C+CAN ++HR PVTLL+WN +GT LVTGD AG VC+WK D  G  V P +QYR+   +TAAVFC    +          S  FFFAT+TG VCYADDLGHCTD+QQL S VD L+FYE   RL+++TRSLLM  QL V +D  V+QFMKVKLSVSAA++ E G+R+V
Sbjct:    1 MSSLFFDYKCSGGSTAAATA---LTWCKSEYLLAVAAEDGHIYFYQDEGVVAPAATIVRETHVPT-LMDWHKKGKTLAVGWADGQISLWSVQDQIQDSRTTCSCANGAVHRAPVTLLLWNPAGTCLVTGDAAGTVCVWKCDSHGGTVLPLVQYRKKGAVTAAVFCGSTSSSQXXXXXXXLSPPFFFATDTGTVCYADDLGHCTDIQQLGSCVDTLMFYEGAMRLIVVTRSLLMV-QLQVADDAHVTQFMKVKLSVSAAAVAERGVRDV 263          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A067BVJ5_SAPPC (ANAPC4_WD40 domain-containing protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067BVJ5_SAPPC)

HSP 1 Score: 169 bits (429), Expect = 3.600e-44
Identity = 104/270 (38.52%), Postives = 148/270 (54.81%), Query Frame = 1
Query:    7 SLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVPAQTTE-------MMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLRE 795
            +LF+DY  +   +   + S   AW +SE++LA A+++  + F+ DEG ++ +    R  +  S  + W PRG  L V W DG VS+W   E   +  +       S H   +TLL W   G RLVTGD  GI+ +WKVD R  +T + QY R  ++T  VFC  P +  +         A     SFFF  + G V YADDLGH +DVQ L+ ++D ++FYEE  RLV+ITR+  +  QL +  D  V   MK KLSVSA    ++GL+E
Sbjct:    2 ALFYDYLVELPPNTRQLCS---AWSESESILAVALDNREVHFFSDEGKKLPATVHLRKADIMS--IAWQPRGTALAVAWGDGMVSLWVPKENAAREVN-------SPHTTRLTLLKWAPFGNRLVTGDENGILAVWKVDARSQMTLATQYTRQGSLTQCVFCVSPQKREKEAKGDVSFSATAACPSFFFGGDIGSVHYADDLGHISDVQMLSHAIDCMMFYEEKHRLVVITRTSQLV-QLQIASDGTVKPVMKGKLSVSA----DTGLKE 254          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A1V9YNK8_9STRA (Intraflagellar Transport protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YNK8_9STRA)

HSP 1 Score: 166 bits (421), Expect = 4.220e-43
Identity = 102/268 (38.06%), Postives = 144/268 (53.73%), Query Frame = 1
Query:    7 SLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVPAQTTEMMAQVFSL-----SFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLRE 795
            +LF+DY      +   + S   AW ++E++LA  +++  I F+ DEG ++  A   R  +  +  + W PRG  L V W DG VS+W   E   +  +       S H   + LL W  SG RL+TGD  G++ +WKVD R  ++ + QY R  ++T  VFC  PA+        FS      SFFF  + G V YADDLGH +DVQ L  ++D ++FYEE  RLV+ITR+  +  QL V  D  V   MK KLSV      +SGL+E
Sbjct:    2 ALFYDYLVDLPANTRQLCS---AWSETESILAIGLDNREIHFFSDEGEKLPVAIHTRKADIMA--IAWQPRGTALAVSWGDGMVSLWIPKESAAREVN-------SPHTTRINLLKWAPSGNRLITGDENGVLAVWKVDARSQMSLATQYTRQGSLTQCVFCVSPAKKDAKGDVAFSATATCPSFFFGGDLGTVHYADDLGHISDVQTLNHAIDYMMFYEEKHRLVVITRASQLM-QLQVAADGTVKPVMKGKLSVQG----DSGLKE 252          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: F0YHE0_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YHE0_AURAN)

HSP 1 Score: 147 bits (371), Expect = 2.000e-36
Identity = 98/297 (33.00%), Postives = 143/297 (48.15%), Query Frame = 1
Query:    7 SLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIH-RLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQY---RRNSTI---TAAVFCP--------------------------VPAQTTEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLREV 798
            SLF D+PC       V     +AWC  E + A   +   I+FY +EG  +   RI+R  +  +  + W P+ K L  GW DG V++W +  P           N S H R PV + +WN   TRLVTGD AG + +WKV       P +QY   +    I   T   FC                           +     E +AQ FS +FF  T +G + YADD+GH T+VQ L + +D ++F+E   RLV++TR+L++  QL +G D  V   MK+K++V A    E G++ +
Sbjct:    2 SLFLDFPCSLPGKTKVTA---VAWCTVEPICAIVTDDHCISFYLEEGICLDECRIQRKTD--ATVVVWHPKMKALASGWEDGCVAVWGLTMP----------PNSSGHGRAPVRIAMWNPLATRLVTGDAAGAITVWKV------LPMIQYSIIQAEGLIGRHTCQSFCSKRILYRVRNHLLRGLPRIASKVSRLELAQARAETLAQAFSPAFFIGTRSGSLYYADDVGHTTEVQALGARIDHMLFFEAKSRLVLLTRALVLV-QLQIGSDGKVIPVMKMKVAV-AGGAAERGIKHI 275          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A7S0SRA0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Chromulina nebulosa TaxID=96789 RepID=A0A7S0SRA0_9STRA)

HSP 1 Score: 146 bits (368), Expect = 3.070e-36
Identity = 97/282 (34.40%), Postives = 142/282 (50.35%), Query Frame = 1
Query:    7 SLFFDYPCKAANSDTVVPSIDLAWCKSENVLACA---MEHGG-----IAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVPAQT----------TEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLREV 798
            S+F    CK  N      +  L+W  ++++ A A   ++H       + F   EG +I    I  D  Q +   EW P GKI+ +GW DG +S W V     KS +V T +N S                                D RG ++P  QY+R   IT A+F  +P ++          +      +S SFFF T+ G++ YADDLGHC+DVQQL S +D ++F+EE  RL+IITRSLL++ Q  VGED  VS+  +VKLS++  +L ++GL+ V
Sbjct:    2 SVFLISQCKFDNETY---ANQLSWSNNDSIAAIASYSIDHNDKESYQVLFVNSEGIQITGPTIAHD--QEATVFEWQPNGKIVVIGWADGMISSWLVDG---KSRAVSTYSNSSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADVRGTLSPIRQYKRKGAITTAIFYVLPVKSDLLRKNENNSSSTSKNSYSPSFFFGTDQGVIVYADDLGHCSDVQQLPSIIDIMLFFEEKSRLIIITRSLLLS-QYQVGEDGKVSRLSQVKLSITGDNL-DNGLKYV 273          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A7S2G5B5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G5B5_9STRA)

HSP 1 Score: 134 bits (336), Expect = 2.020e-35
Identity = 73/167 (43.71%), Postives = 100/167 (59.88%), Query Frame = 1
Query:  202 MEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHR-LPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVP--AQTTEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLM 693
            M W  + KIL  GW DG ++I++    L      C  +N   H    ++ L+WN   +RLV+GD AG+V +WK D RG ++   QY+ NS  TA VF         ++++   FS SFF+ TE G V +ADDLGH T+VQ L+SSVD + FY +  RLVIITR+LLM
Sbjct:    5 MVWQAKNKILATGWEDGHIAIYS----LNNQKLDCVYSNDKDHSGARLSFLMWNPMSSRLVSGDSAGVVRVWKSDSRGALSMYKQYKCNSATTAGVFSTAGHMQSRSDVLGHAFSPSFFYGTEDGKVYFADDLGHMTEVQALSSSVDCMKFYGDKSRLVIITRALLM 167          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A7S3JPF7_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JPF7_9STRA)

HSP 1 Score: 142 bits (357), Expect = 1.490e-34
Identity = 91/260 (35.00%), Postives = 136/260 (52.31%), Query Frame = 1
Query:    1 MNSLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRN-STITAAVFCPVPAQTTE-----MMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVS 762
            M SLF D+PC   N         +AWC +  + A A     I FY +EG  +    I R     + ++ W PRGK+L  GW DG V  + +      SAS    ++    R  ++++ WN + TR+V+ D++G V +WK +  G +T   QY    S +  A+FCPV A   E     +MA++     F  TE G +  ADD+G    VQ    SV+ L+F+E+ RRLV++TR+ ++A QL + ED  V   M +KLSV+
Sbjct:    1 MASLFLDFPCGKKNEKNANVKC-IAWCDTAAICAVATSDSCIRFYGEEGVSLNDCGIER--KFEATSIAWQPRGKVLATGWEDGHVGTYAIAGN-GCSASPRFSSDNEHSRFSLSVIRWNAARTRVVSCDLSGRVVVWKAEICGEMTELKQYDTGGSPVRQALFCPVLAIRQEKSGDSLMARIL---VFVGTERGTLVVADDVGESRQVQNFGESVEHLLFHEQERRLVLLTRNAILA-QLQISEDGKVIPVMTMKLSVA 252          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A662X2V3_9STRA (Uncharacterized protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X2V3_9STRA)

HSP 1 Score: 140 bits (354), Expect = 3.740e-34
Identity = 97/288 (33.68%), Postives = 140/288 (48.61%), Query Frame = 1
Query:    1 MNSLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSASV-CTCANLSI-------------------------HRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVPA-------QTTEMMAQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSL-LMAHQLCVGEDEIVSQFMKVKLSVS 762
            M +LF+DY  +   +   V S+   W +   VLA A+E+  I F+ DEG +   +           TM W PRG+ L VGW+DG++S+      +  + SV C    L++                         H   V LL W   G RL++ D  GI+ +WKVD R  +T S QY R  + T  VF   P+       +  E  +Q     FFF  E G V YADDLGH +D+Q L  ++D ++F+EE  RL++ITR+L L  +Q+  G    V    KVKLS++
Sbjct:    1 MCALFYDYNVQVPANLRQVCSV---WSELHPVLAVALENREIQFFSDEGEKQQGSETY-SRGADVVTMAWQPRGEALAVGWSDGRLSLARSPVAVGMALSVDCLALELTLFPHDTAGMVSLWVFKDQTAREVNSPHSSRVGLLKWTPLGNRLISADENGILAVWKVDSRCQLTLSTQYARQGSFTHCVFAAQPSLPKDKEIKRYEQFSQYACPQFFFGGEVGSVHYADDLGHISDIQVLNHAIDAMMFFEEQGRLLVITRALQLNVYQVLCGGT--VKHLTKVKLSLA 282          
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Match: A0A1W0AAB5_9STRA (Intraflagellar Transport Protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAB5_9STRA)

HSP 1 Score: 140 bits (353), Expect = 5.020e-34
Identity = 93/272 (34.19%), Postives = 136/272 (50.00%), Query Frame = 1
Query:    7 SLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGAEIISARIRRDNNQRSNTME--WSPRGKILGVGWTDGQVSIWNVMEPLRKSASVCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSLQYRRNSTITAAVFCPVPAQTTEMM-------AQVFSLSFFFATETGMVCYADDLGHCTDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVKLSVSAASLQESGLRE 795
            +LF+DYP     +   + S   AW +SE +LA  +++  + FY DEG ++ S      ++++++ ME  W PRG  L V W+DG VS+W   E   +  +       S H   + LL                     K+D R  +T + QY R  ++T  VFC  P +  + +       A     SFFF  + G V YADDLGH +DVQ L  ++D ++FYEE  RLV+ITR+  +  QL V  D  V   +KVKLSVS     E+ L+E
Sbjct:    2 ALFYDYPVDLPANTRQLCS---AWSESEAILAVGLDNREVHFYSDEGEKLQSPV----HSRKADVMEIAWQPRGNALAVSWSDGMVSLWIPKENAAREVN-------SPHTTRINLLKXXXXXXXXXXXXXXXXXXXXKIDARSQMTLATQYTRQGSLTQCVFCITPQKREKEVKGDITFSATAACPSFFFGGDLGSVHYADDLGHISDVQTLNHAIDCMMFYEEQHRLVVITRAAHLV-QLQVASDGTVKPVLKVKLSVSG----ENSLKE 254          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9786.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LH96_ECTSI5.860e-10360.07Intraflagellar transport protein 140 puative n=1 T... [more]
A0A835YKN9_9STRA9.650e-8252.61Putative intraflagellar transport protein 140 n=1 ... [more]
A0A067BVJ5_SAPPC3.600e-4438.52ANAPC4_WD40 domain-containing protein n=2 Tax=Sapr... [more]
A0A1V9YNK8_9STRA4.220e-4338.06Intraflagellar Transport protein n=1 Tax=Achlya hy... [more]
F0YHE0_AURAN2.000e-3633.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S0SRA0_9STRA3.070e-3634.40Hypothetical protein (Fragment) n=1 Tax=Chromulina... [more]
A0A7S2G5B5_9STRA2.020e-3543.71Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S3JPF7_9STRA1.490e-3435.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A662X2V3_9STRA3.740e-3433.68Uncharacterized protein n=2 Tax=Nothophytophthora ... [more]
A0A1W0AAB5_9STRA5.020e-3434.19Intraflagellar Transport Protein n=1 Tax=Thraustot... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9786contigC-tenellus_contig9786:2815..5469 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D8LH96
Preferred nameIFT140
PFAMsANAPC4_WD40,TPR_7
Model size798
Max annot lvl2759|Eukaryota
KEGG koko:K19672
Hectar predicted targeting categoryother localisation
GOsGO:0001501,GO:0001654,GO:0001655,GO:0001750,GO:0002119,GO:0002164,GO:0003002,GO:0003008,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006972,GO:0006979,GO:0006996,GO:0007017,GO:0007018,GO:0007275,GO:0007368,GO:0007389,GO:0007399,GO:0007423,GO:0007507,GO:0007568,GO:0007600,GO:0007605,GO:0008104,GO:0008150,GO:0008340,GO:0008589,GO:0009266,GO:0009408,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009792,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009966,GO:0009987,GO:0010259,GO:0010638,GO:0010646,GO:0010970,GO:0015630,GO:0016043,GO:0021532,GO:0021915,GO:0022008,GO:0022607,GO:0022611,GO:0023051,GO:0030030,GO:0030031,GO:0030154,GO:0030182,GO:0030326,GO:0030705,GO:0030990,GO:0030991,GO:0031076,GO:0031344,GO:0031346,GO:0031503,GO:0032386,GO:0032388,GO:0032391,GO:0032501,GO:0032502,GO:0032838,GO:0032879,GO:0032886,GO:0032991,GO:0033036,GO:0033043,GO:0033365,GO:0034613,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035721,GO:0035735,GO:0035845,GO:0035869,GO:0036064,GO:0040024,GO:0042073,GO:0042461,GO:0042733,GO:0042995,GO:0043005,GO:0043009,GO:0043010,GO:0043053,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044085,GO:0044087,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0046530,GO:0046907,GO:0048468,GO:0048513,GO:0048518,GO:0048522,GO:0048562,GO:0048568,GO:0048583,GO:0048598,GO:0048666,GO:0048699,GO:0048701,GO:0048704,GO:0048705,GO:0048706,GO:0048731,GO:0048736,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051049,GO:0051050,GO:0051128,GO:0051130,GO:0051179,GO:0051234,GO:0051270,GO:0051272,GO:0051641,GO:0051649,GO:0055115,GO:0060041,GO:0060173,GO:0060271,GO:0060341,GO:0060429,GO:0060491,GO:0060632,GO:0061512,GO:0065007,GO:0070727,GO:0070925,GO:0071840,GO:0072001,GO:0072359,GO:0097014,GO:0097458,GO:0097542,GO:0097730,GO:0097731,GO:0097733,GO:0099111,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1904888,GO:1905515,GO:1905796,GO:1905798,GO:1905799,GO:1905801,GO:1990403
Exons7
Evalue9.6e-104
EggNOG OGsKOG3617@1|root,KOG3617@2759|Eukaryota
Descriptionintraciliary retrograde transport
Cds size798
COG categoryT
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9786.2.1prot_C-tenellus_contig9786.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9786 2815..5469 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790201.2020547-CDS-C-tenellus_contig9786:2814..29581680790201.2020547-CDS-C-tenellus_contig9786:2814..2958Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 2815..2958 +
1680790201.217187-CDS-C-tenellus_contig9786:3074..31551680790201.217187-CDS-C-tenellus_contig9786:3074..3155Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 3075..3155 +
1680790201.2284462-CDS-C-tenellus_contig9786:3485..36531680790201.2284462-CDS-C-tenellus_contig9786:3485..3653Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 3486..3653 +
1680790201.2386386-CDS-C-tenellus_contig9786:4194..43291680790201.2386386-CDS-C-tenellus_contig9786:4194..4329Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 4195..4329 +
1680790201.2487833-CDS-C-tenellus_contig9786:4785..49551680790201.2487833-CDS-C-tenellus_contig9786:4785..4955Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 4786..4955 +
1680790201.2612925-CDS-C-tenellus_contig9786:5011..50211680790201.2612925-CDS-C-tenellus_contig9786:5011..5021Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 5012..5021 +
1680790201.2703907-CDS-C-tenellus_contig9786:5379..54691680790201.2703907-CDS-C-tenellus_contig9786:5379..5469Choristocarpus tenellus KU2346CDSC-tenellus_contig9786 5380..5469 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9786.2.1

>prot_C-tenellus_contig9786.2.1 ID=prot_C-tenellus_contig9786.2.1|Name=mRNA_C-tenellus_contig9786.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=266bp
MNSLFFDYPCKAANSDTVVPSIDLAWCKSENVLACAMEHGGIAFYEDEGA
EIISARIRRDNNQRSNTMEWSPRGKILGVGWTDGQVSIWNVMEPLRKSAS
VCTCANLSIHRLPVTLLIWNQSGTRLVTGDVAGIVCIWKVDGRGNVTPSL
QYRRNSTITAAVFCPVPAQTTEMMAQVFSLSFFFATETGMVCYADDLGHC
TDVQQLTSSVDRLVFYEETRRLVIITRSLLMAHQLCVGEDEIVSQFMKVK
LSVSAASLQESGLREV
back to top

mRNA from alignment at C-tenellus_contig9786:2815..5469+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9786.2.1 ID=mRNA_C-tenellus_contig9786.2.1|Name=mRNA_C-tenellus_contig9786.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2655bp|location=Sequence derived from alignment at C-tenellus_contig9786:2815..5469+ (Choristocarpus tenellus KU2346)
ATGAATTCTCTCTTCTTTGACTACCCCTGCAAGGCGGCGAACAGCGACAC AGTCGTACCATCAATCGACCTCGCCTGGTGCAAATCTGAGAATGTCTTGG CTTGTGCAATGGAGCATGGAGGCATCGCCTTCTACGAAGATGAGGTAGAG AGCGCAAATAGGTCGTCACATATTGAATATGGTGTCGAAAACGACCGCAT CTGACGCAGTGGACGAAATCACACCATCTAATCTATCTCCATCGCCAACC AACCTTTCAGGGAGCTGAGATCATCTCTGCCCGTATCAGGAGGGACAATA ACCAGAGGTCCAATACGATGGAATGGTCACCAAGAGGGAAGGTACCAAAA TTCCCCTTCATTGTGATATGATTAAGGGCGTGAAAAGGGTCGTCACAAAC ACAGCTTTAAAAGATATTTTCTTGGTGGTTGATATTGGTTCAATAATGTA CATACAGCCAACTCCAACTCTCAAACGTTTCGTCTGAGTCTCCCCCTCTC ATGACTGTGTTTTAGAATTAAACAGACCATTCTCTGAGGTTTTGTCCTCA GATCGCCTAAAGGTGAGCCTAACGATCTCAAAGGCCGTACTTTCTTCTCG CATGGTTGGCCTAGTCTCCTCCCCAGAGATTGACCCTCCCCAATTGCCAA CACCAACCTCCAATCCAACAGATCCTTGGAGTTGGTTGGACAGATGGGCA GGTATCGATTTGGAACGTCATGGAACCTCTGCGTAAAAGTGCCTCAGTTT GCACTTGTGCAAATTTAAGCATCCATCGTCTTCCGGTGACCTTACTTATC TGGAATCAGAGTGGTACGCGGCTGGTAACAGGGGACGTGGTGAGCAAACT CCGTTGTCCCTGCCGTTTCAGGTCCAGAATACAGTTACGAGGGCCGCTAC CTTGAGATAGGCCTCGGATTAGAAACGTTTCGTTCATGGTATTCGCCATC TCCTTAGACTATTTCCTCTACATCAACTGTGCCCAACAACTGGGCATCTG ATCTGCCTCCCTGCACAATGCCATGTCAGAAAAGACCAACTCGCCGTTGC AAAACTGAACAGATGAGTGTAGCATACACCATAGTACCTGACATGTAACA GAGATGAAGGAGGATACAATGAGAAAGGACAAAAGGGTATTGAAGTATCA CACAAGCACTACAGTGGACACGAATGCACCCATCATCTTCTTGCTACCCC TCCAACTCCTATCTTGGTAGGCCTCTCTCTTGTACCAATCACTTCATGGC ATGGCAGATCTCTCCTAACTTTCAGGATAACACTGGAGTAGTCCCAACAT AGATTGATTTATTGTTTCAAGTTTCCACAAGACCTTGCACACATTTAACA GGCTGCAATCCATTTGTTGGCCCCTTTCAGGCTGGCATTGTGTGCATTTG GAAGGTTGATGGCAGGGGCAATGTGACACCCTCTCTTCAATACCGCAGGA ATAGCACCATCACTGCAGCAGTCTTTTGCCCAGTGCCAGCCCAAACCACA GAAATGATGGCACAGGTAACTGAAGGATAGATCTGGATGTTACTGTTCAT TCATACTACTTGTTGTAGGCTAAATCTATGACTGAAATAGGAGGGATACA CTGAACAACTACTTCAGAATGTATCCAAACACTCAAAACATTGATGCTTC GAAGTACAATGTATTGATATTTTCAAGTTGAGTCAACGCAAAATGTGGAT GGTTCCAAAATAATTAGTTTCATACAGGTAGGGTGAGCTACCTGAGTCGA CGATATTGTTATCCTTTCTACTCATCTTAGCAGGGTTCAGGATAAAGATA TTTTATTTTTCCACTGTTACACCTCCTGACCGCACACCTAAGTGATACCA CCTGCTACCCCTTGTGTCTTCCTTCTGCCCATCTCTCTACAAAACATACC GTTGATATGGTGACGGTTGGTGGGGTTGGTGGAACAAACATTCCCCTGTC ATGTAATGGTGTTGAGTGCAGGTATTCTCGCTGTCATTCTTCTTTGCAAC AGAAACAGGAATGGTGTGCTATGCTGATGACCTGGGCCACTGCACTGATG TGCAACAGCTCACGAGCTCTGTTGATCGGCTGGTGTTCTATGAGGAAACG AGGCGCCTTGTCATAATCACACGCTCCTTACTCATGGCTCAGTTACAGGC GAGGAGAAGGAGAATATAATAGATGGGGGATTTTTTAAGGGTCCCAGTCA ACTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAGAGTCTGTTCCTCCAA CTATTTTGTTGTGGTGAGATTTTTGACATTAGTGAGCTCCTGAAGCATCT CTGATCACCACTCTTTCATCTGATCTCCCATCTGATCTCCCATCTGATCA CCACATGTAAATGGAAAAAAAATTCCCCCCCTTCCCAAGTCAACTAACTA GGCATCAGTAGTTTACTAACCATTGGTGTTAGGGTTAGGGTTATTGGAAA ATAGTCTGCGGTGATCAAGCAAATAATTCATCTGCTCTCCCTACCTCCAT ATGTATCCACCTACCTATACCCCCACTGTACTCTGCCGTTACACACTCTG GATACTCAAGAGTAGGTGGGAGAGGATGAGATTGTGTCGCAGTTTATGAA GGTGAAGTTGTCTGTATCAGCAGCATCTCTGCAAGAATCAGGTCTTCGAG AGGTG
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9786:2815..5469+

>mRNA_C-tenellus_contig9786.2.1 ID=mRNA_C-tenellus_contig9786.2.1|Name=mRNA_C-tenellus_contig9786.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=798bp|location=Sequence derived from alignment at C-tenellus_contig9786:2815..5469+ (Choristocarpus tenellus KU2346)
ATGAATTCTCTCTTCTTTGACTACCCCTGCAAGGCGGCGAACAGCGACAC
AGTCGTACCATCAATCGACCTCGCCTGGTGCAAATCTGAGAATGTCTTGG
CTTGTGCAATGGAGCATGGAGGCATCGCCTTCTACGAAGATGAGGGAGCT
GAGATCATCTCTGCCCGTATCAGGAGGGACAATAACCAGAGGTCCAATAC
GATGGAATGGTCACCAAGAGGGAAGATCCTTGGAGTTGGTTGGACAGATG
GGCAGGTATCGATTTGGAACGTCATGGAACCTCTGCGTAAAAGTGCCTCA
GTTTGCACTTGTGCAAATTTAAGCATCCATCGTCTTCCGGTGACCTTACT
TATCTGGAATCAGAGTGGTACGCGGCTGGTAACAGGGGACGTGGCTGGCA
TTGTGTGCATTTGGAAGGTTGATGGCAGGGGCAATGTGACACCCTCTCTT
CAATACCGCAGGAATAGCACCATCACTGCAGCAGTCTTTTGCCCAGTGCC
AGCCCAAACCACAGAAATGATGGCACAGGTATTCTCGCTGTCATTCTTCT
TTGCAACAGAAACAGGAATGGTGTGCTATGCTGATGACCTGGGCCACTGC
ACTGATGTGCAACAGCTCACGAGCTCTGTTGATCGGCTGGTGTTCTATGA
GGAAACGAGGCGCCTTGTCATAATCACACGCTCCTTACTCATGGCTCATC
AACTGTGTGTGGGAGAGGATGAGATTGTGTCGCAGTTTATGAAGGTGAAG
TTGTCTGTATCAGCAGCATCTCTGCAAGAATCAGGTCTTCGAGAGGTG
back to top