mRNA_C-tenellus_contig973.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig973.1.1
Unique NamemRNA_C-tenellus_contig973.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: D7G5B1_ECTSI (Flagellar associated protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B1_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 2.690e-28
Identity = 53/70 (75.71%), Postives = 62/70 (88.57%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHKV 210
            DFVVGT +AY+VAC+ASAFEELDPERRRGSVLVQGMVGSV CVA HP  P+L ++ ESG++HLWDY+ KV
Sbjct:  390 DFVVGTNRAYVVACAASAFEELDPERRRGSVLVQGMVGSVACVAAHPLLPRLVILCESGDVHLWDYNLKV 459          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A7S3AZA4_9EUKA (Hypothetical protein n=1 Tax=Haptolina ericina TaxID=156174 RepID=A0A7S3AZA4_9EUKA)

HSP 1 Score: 78.2 bits (191), Expect = 3.520e-15
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DFV+GT  A IVAC+A+ F EL+P+ RRG++LVQG   +V+ +ATHP   + AV G +G + LWDY  +
Sbjct:  338 DFVIGTTNALIVACNAAMFGELEPDARRGTLLVQGQDAAVSGLATHPSLTRFAVCGRAGLLQLWDYSER 406          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: W2QWE4_PHYPN (Uncharacterized protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2QWE4_PHYPN)

HSP 1 Score: 78.2 bits (191), Expect = 3.530e-15
Identity = 36/69 (52.17%), Postives = 50/69 (72.46%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF+V T  A+IV  SA+ F E +P+RRRG++L+QG+  S++ +ATHPR PQLA+   SG + LWDY  K
Sbjct:  414 DFIVSTASAFIVGMSATLFGEHEPDRRRGTLLMQGINDSIHGLATHPRLPQLALSSYSGVVQLWDYSAK 482          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A3R7GKJ3_9STRA (Uncharacterized protein n=1 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GKJ3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.210e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF+V T  A+IV  +AS F E +P+RRRG++L+QG+  S++ +A HPR PQLA+   SG + LWDY  K
Sbjct:   73 DFIVSTASAFIVGMNASLFAEHEPDRRRGTLLMQGINDSIHGLAAHPRLPQLALSSYSGVVQLWDYSAK 141          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A3R7J2T4_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7J2T4_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.240e-14
Identity = 35/69 (50.72%), Postives = 49/69 (71.01%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF+V T  A+IV  +AS F E +P+RRRG++L+QG+  S++ +A HPR PQLA+   SG + LWDY  K
Sbjct:   26 DFIVSTASAFIVGMNASLFAEHEPDRRRGTLLMQGINDSIHGLAAHPRLPQLALSSYSGVVQLWDYSAK 94          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: H3GM44_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GM44_PHYRM)

HSP 1 Score: 75.1 bits (183), Expect = 4.280e-14
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            +F+V T  A+IV  SA  F E +PERRRG++L+QG+  S++ +A HPR PQLA+   SG + LWDY  K
Sbjct:  414 EFIVSTASAFIVGMSAGLFAEHEPERRRGTLLMQGINDSIHGLAAHPRLPQLALSSYSGVVQLWDYAAK 482          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A225VX07_9STRA (Uncharacterized protein n=2 Tax=Phytophthora TaxID=4783 RepID=A0A225VX07_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 5.840e-14
Identity = 35/69 (50.72%), Postives = 47/69 (68.12%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF+V T  A+IV  SA  F E + ERRRG++L+QG+  S++ +A HPR PQLA+   SG + LWDY  K
Sbjct:  418 DFIVSTASAFIVGMSAGLFGEHESERRRGTLLMQGINDSIHGLAAHPRLPQLAISSYSGVVQLWDYSAK 486          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A2V2WZF4_TRYCR (ANAPC4_WD40 domain-containing protein n=1 Tax=Trypanosoma cruzi TaxID=5693 RepID=A0A2V2WZF4_TRYCR)

HSP 1 Score: 73.6 bits (179), Expect = 1.480e-13
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF++ T  A I+  ++ AF   + E  RG ++VQG    ++C+A HP+ PQLA+ G SG++H+WDY+ K
Sbjct:  416 DFMISTAHAMIIDVASKAFHTGNAELLRGKLIVQGQEKGIHCIAAHPKLPQLAIAGHSGDVHIWDYNSK 484          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: V5B2C6_TRYCR (ANAPC4_WD40 domain-containing protein n=8 Tax=Trypanosoma cruzi TaxID=5693 RepID=V5B2C6_TRYCR)

HSP 1 Score: 73.6 bits (179), Expect = 1.490e-13
Identity = 29/69 (42.03%), Postives = 46/69 (66.67%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DF++ T  A I+  ++ AF   + E  RG ++VQG    ++C+A HP+ PQLA+ G SG++H+WDY+ K
Sbjct:  456 DFMISTAHAMIIDVASKAFHTGNAELLRGKLIVQGQEKGIHCIAAHPKLPQLAIAGHSGDVHIWDYNSK 524          
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Match: A0A8K1C420_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C420_PYTOL)

HSP 1 Score: 73.2 bits (178), Expect = 2.030e-13
Identity = 34/69 (49.28%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKPQLAVVGESGNIHLWDYDHK 207
            DFVVGT  A+IV  SA  F E + ERRRG++L+QG+   ++ +ATHP+  QLA+   SG + LWDY+ +
Sbjct:  409 DFVVGTASAFIVGMSADLFAEHEAERRRGTLLMQGINDEIHGLATHPKYSQLALSSYSGAVQLWDYNSR 477          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig973.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B1_ECTSI2.690e-2875.71Flagellar associated protein n=1 Tax=Ectocarpus si... [more]
A0A7S3AZA4_9EUKA3.520e-1550.72Hypothetical protein n=1 Tax=Haptolina ericina Tax... [more]
W2QWE4_PHYPN3.530e-1552.17Uncharacterized protein n=14 Tax=Phytophthora TaxI... [more]
A0A3R7GKJ3_9STRA1.210e-1450.72Uncharacterized protein n=1 Tax=Phytophthora kerno... [more]
A0A3R7J2T4_9STRA1.240e-1450.72Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
H3GM44_PHYRM4.280e-1450.72Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
A0A225VX07_9STRA5.840e-1450.72Uncharacterized protein n=2 Tax=Phytophthora TaxID... [more]
A0A2V2WZF4_TRYCR1.480e-1342.03ANAPC4_WD40 domain-containing protein n=1 Tax=Tryp... [more]
V5B2C6_TRYCR1.490e-1342.03ANAPC4_WD40 domain-containing protein n=8 Tax=Tryp... [more]
A0A8K1C420_PYTOL2.030e-1349.28Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig973contigC-tenellus_contig973:2091..3022 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7G5B1
Preferred nameWDR66
PFAMsWD40
Model size222
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0003341,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005856,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0008150,GO:0009987,GO:0016043,GO:0030030,GO:0031514,GO:0032838,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0044782,GO:0071840,GO:0097014,GO:0099568,GO:0120025,GO:0120036,GO:0120038
Exons2
Evalue4.42e-29
EggNOG OGs2CCTB@1|root,2QQ05@2759|Eukaryota
Descriptioncilium movement
Cds size222
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790198.4579325-CDS-C-tenellus_contig973:2090..21701680790198.4579325-CDS-C-tenellus_contig973:2090..2170Choristocarpus tenellus KU2346CDSC-tenellus_contig973 2091..2170 +
1680790198.472643-CDS-C-tenellus_contig973:2880..30221680790198.472643-CDS-C-tenellus_contig973:2880..3022Choristocarpus tenellus KU2346CDSC-tenellus_contig973 2881..3022 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig973.1.1prot_C-tenellus_contig973.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig973 2091..3022 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig973.1.1

>prot_C-tenellus_contig973.1.1 ID=prot_C-tenellus_contig973.1.1|Name=mRNA_C-tenellus_contig973.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=74bp
DFVVGTQQAYIVACSASAFEELDPERRRGSVLVQGMVGSVNCVATHPRKP
QLAVVGESGNIHLWDYDHKVRTL*
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mRNA from alignment at C-tenellus_contig973:2091..3022+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig973.1.1 ID=mRNA_C-tenellus_contig973.1.1|Name=mRNA_C-tenellus_contig973.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=932bp|location=Sequence derived from alignment at C-tenellus_contig973:2091..3022+ (Choristocarpus tenellus KU2346)
GACTTTGTGGTTGGGACACAGCAGGCGTATATTGTTGCATGTTCAGCGTC TGCCTTCGAGGAGCTGGACCCTGAGCGCAGGTGAGGATCTGTAAGCAGAA GACAGGAATGCAGGGATGGGGTGTGGCAGGCCCAGGAAAACCCCAGTGCC AGGTAGGAGATGGACACATATTTTCACTGCCAGGTCCTTACTTTTCCACT TGGTTCACTCTTTCTATCAACTTCTTCATCCCTTCTTTCCACAGGGCATT CTGTACACTTTAAAAAAAACATCCAAGGCATCACTGGTCAATAGGATAGG ACATGACTACTATGTAGTCTATATATAGCATTGGTCTTTAGTTGACACCC ACGATCATCAAGAAGACTCTCCAAGCATATAAAATCAGTGGCCCAATTGG ATGAACAAAAACCTCTTTATAGACTCATTCCATGACTCAGTCGCAGATCA AGTCACTCAATGTGACAATATTAGAGCAACTTGTCTTGACAGCCGAGTGG GTCAGCATCCACCTGATTTCAGTTCTATTGTCTCACATGTTTGACATACA AGAAAAAAAGAATTTAGAGTTAACACCTGATGGTGCATATGTAGCCATGC CCCATTGGTTCAGATTCCATCCTTCATATGGCTTTTCTTCCTCTTATTCA ATTGCCCTAGATCTACTCTCCCGACTGCAAGTTCTAGGCACTGTGTTGCC TACCCTTGACTCCCCACATGCAAGAGTATCACAAATAACACCTCCCTCCT CTCTCCTGGATGTAATCCAACTCCAACCCCACTCAAATAGGAGAGGATCA GTGCTTGTTCAAGGCATGGTAGGATCAGTAAACTGTGTGGCTACACATCC TCGGAAACCGCAACTTGCTGTCGTTGGAGAGTCTGGGAATATTCACCTGT GGGATTATGACCATAAGGTCAGAACATTGTAA
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Coding sequence (CDS) from alignment at C-tenellus_contig973:2091..3022+

>mRNA_C-tenellus_contig973.1.1 ID=mRNA_C-tenellus_contig973.1.1|Name=mRNA_C-tenellus_contig973.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=222bp|location=Sequence derived from alignment at C-tenellus_contig973:2091..3022+ (Choristocarpus tenellus KU2346)
GACTTTGTGGTTGGGACACAGCAGGCGTATATTGTTGCATGTTCAGCGTC
TGCCTTCGAGGAGCTGGACCCTGAGCGCAGGAGAGGATCAGTGCTTGTTC
AAGGCATGGTAGGATCAGTAAACTGTGTGGCTACACATCCTCGGAAACCG
CAACTTGCTGTCGTTGGAGAGTCTGGGAATATTCACCTGTGGGATTATGA
CCATAAGGTCAGAACATTGTAA
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