mRNA_C-tenellus_contig9638.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9638.1.1
Unique NamemRNA_C-tenellus_contig9638.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: D7G9E9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI)

HSP 1 Score: 340 bits (872), Expect = 1.610e-111
Identity = 171/244 (70.08%), Postives = 200/244 (81.97%), Query Frame = 1
Query:    1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            R R G GPVT+VVSPLISLMEDQV SL SNGI AC +G G SDL  E KA  G++ LVFVTPEK++ WDHGL+A++ GPGLAL AVDESHCVAEWGHDFRPSYLEL  LR K+P+VP+MALTATATPRV+ EI+ NLGLR+P VAKTSFNR NLHY+VK      + E L  LL GL GSAI+YVMTK++AE +   V++IVGS+GAR YHGGMS  DRREVHHAF+RD++QVV+AT+AFGMGI
Sbjct:    4 RGRTGTGPVTLVVSPLISLMEDQVLSLASNGISACLVG-GSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDKFPQVPLMALTATATPRVQSEIMTNLGLRNPLVAKTSFNRWNLHYSVKTVNVQSRHEALCSLLRGLEGSAIIYVMTKRDAEQLTGDVARIVGSKGARTYHGGMSPADRREVHHAFIRDDVQVVIATIAFGMGI 246          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A6H5JXT2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT2_9PHAE)

HSP 1 Score: 314 bits (805), Expect = 3.280e-105
Identity = 157/225 (69.78%), Postives = 184/225 (81.78%), Query Frame = 1
Query:   58 MEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            MEDQV SL SNGI AC +G G SDL  E KA  G++ LVFVTPEK++ WDHGL+A++ GPGLAL AVDESHCVAEWGHDFRPSYLEL  LR ++P+VPIMALTATATPRV+ EI+ NLGLR+P VAKTSFNR NLHY+VK      + E L  LL GL GSAI+YVMTKK+AE +   V++IVGS+GAR YHGGMS  DRREVHHAF+RD++QVV+AT+AFGMGI
Sbjct:    1 MEDQVLSLASNGISACLVG-GSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDRFPQVPIMALTATATPRVQSEIMTNLGLRNPLVAKTSFNRWNLHYSVKTVNVQSRHEALCSLLRGLEGSAIIYVMTKKDAEQLTGDVARIVGSKGARTYHGGMSPADRREVHHAFIRDDVQVVIATIAFGMGI 224          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: W7UB66_9STRA (DNA helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UB66_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.430e-63
Identity = 120/244 (49.18%), Postives = 172/244 (70.49%), Query Frame = 1
Query:    1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            R + G   VTVVVSPL++L+EDQV  LR+NGI A  +GS  ++  +E  A  G+++L++VTPE++  W   L  + N  GLA  A+DE+HCV++WGHDFRP+YL L  LR++ P+VPI+A++ATAT  V+ +II  L L DP V ++  NR NLHYTVK +     +E L  +L G  GSAIVYV+TK EAE++A+ ++  + S  A  YHGG+S T R++V++ + RDE++VV AT+AFGMG+
Sbjct:   59 RDKKGYRCVTVVVSPLLALIEDQVAGLRANGISALAVGSAATNDEVEG-ALRGDYALLYVTPERLEGWLDSLVTLHNNVGLAALAIDEAHCVSQWGHDFRPAYLLLYKLREQLPDVPIIAVSATATYHVQEDIIQRLRLDDPLVIRSGINRPNLHYTVKSKSPGGPMEDLGGILRGSAGSAIVYVLTKAEAEELATALTNKL-SISASAYHGGLSATVRQQVYNQWSRDEVRVVCATVAFGMGV 300          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A4D9DGB0_9STRA (DNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGB0_9STRA)

HSP 1 Score: 224 bits (570), Expect = 1.570e-63
Identity = 119/244 (48.77%), Postives = 172/244 (70.49%), Query Frame = 1
Query:    1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            R + G   VTVVVSPL++L+EDQV  LR+NGI A  +GS  ++  +E  A  G+++L++VTPE++  W   L  + N  GLA  A+DE+HCV++WGHDFRP+YL L  LR++ P+VPI+A++ATAT  V+ +I+  L L DP V ++  NR NLHYTVK +     +E L  +L G  GSAIVYV+TK EAE++A+ ++  + S  A  YHGG+S T R++V++ + RDE++VV AT+AFGMG+
Sbjct:  427 RDKKGYRCVTVVVSPLLALIEDQVAGLRANGISALAVGSAATNDEVEG-ALRGDYALLYVTPERLEGWLDSLVTLHNNVGLAALAIDEAHCVSQWGHDFRPAYLLLYKLREQLPDVPIIAVSATATHHVQEDIVQQLRLDDPLVIRSGINRPNLHYTVKSKSPGGPMEDLGGILRGSAGSAIVYVLTKAEAEELATALTNKL-SISASAYHGGLSATVRQQVYNQWSRDEVRVVCATVAFGMGV 668          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A4P9WJD1_9FUNG (DNA helicase (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WJD1_9FUNG)

HSP 1 Score: 210 bits (535), Expect = 1.440e-62
Identity = 115/246 (46.75%), Postives = 159/246 (64.63%), Query Frame = 1
Query:   19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIR--NGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGAD-KQVELRRLLT------GLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            G   VV+SPLISLMEDQV  +   GI A FLGS   D  +E +A  GE+S++++TPEK   W  GL+ I   +  G+ +FA+DE+HCV+EWGHDFRP + +L+ LR+ +P+ PIMALTATATP V  +I  NL LRD   A T FNR NL Y V+ + A  KQ   R  L        ++GS +VY  ++K+ E+VA+ + +   S  A  YH G+  + R ++H  F++D++QV+VAT AFGMGI
Sbjct:  138 GKTAVVISPLISLMEDQVMHMTKCGISAAFLGSAQVDSSVELRAMKGEYSILYLTPEKAIRWTTGLRKINQFSKGGICMFAIDEAHCVSEWGHDFRPEFRQLNMLREAFPKTPIMALTATATPTVAADIKTNLKLRDLHQATTGFNRPNLSYHVQFKSAAVKQDRYRDDLAFIWDERAVSGSTVVYCPSRKQTEEVAAFLREQGVSSAA--YHAGLLPSQRTQLHRKFMQDDLQVLVATSAFGMGI 381          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A7S0CYG5_9EUKA (DNA helicase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG5_9EUKA)

HSP 1 Score: 215 bits (548), Expect = 1.830e-60
Identity = 111/240 (46.25%), Postives = 157/240 (65.42%), Query Frame = 1
Query:   19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVK---VQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            G   +V+SPLISLMEDQV SL    + AC L S   D  + + A  G++ LV+++PE+I  W  G+Q +  GPG+ LFA+DE+HC++EWGHDFR +Y  L+ LR ++P +PIMALTATAT RV  +++ +L ++ P +  +  +R NLHY++K   V   D    L R   G  GS IVY +++K+ ED+A  ++      GAR YHG +  + R E+H+ F  D+IQVVVATLAFGMGI
Sbjct:   54 GKPGIVISPLISLMEDQVKSLTQVNVSACALTSANHDRDVWKGAREGKYKLVYMSPERIDVWVDGIQELEAGPGICLFAIDEAHCISEWGHDFRSAYRSLAKLRDRFPTIPIMALTATATARVVTDVVKSLKMKSPAILTSPLDRPNLHYSIKSKNVAELDLSPALFRQAAG--GSVIVYCLSRKKTEDIARMLTS--RGIGARAYHGSLPSSRRSEIHNLFSFDKIQVVVATLAFGMGI 289          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A3P3YLC8_PLABS (ATP-dependent DNA helicase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YLC8_PLABS)

HSP 1 Score: 213 bits (541), Expect = 6.740e-60
Identity = 110/234 (47.01%), Postives = 157/234 (67.09%), Query Frame = 1
Query:   28 TVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            TVV+SPLI+LM+DQ  +L   GI +CFL S   D  +   A  GE+ ++F++PEK+  W   L  I     +  FA+DESHC++ WG  FRP+Y +L+ LR+++P VPIMALTATATP V+ +IIA+L LR+PF+ KTSF+R NL Y+V ++ +      R LL   +GS+I+Y + +++  D+ + V  +  + GA  YH GM+ + R EVH AF  DEI+VV AT+AFGMGI
Sbjct:   65 TVVISPLIALMKDQSMALDQRGISSCFLNSTQRDQRVWEAARRGEYQIIFLSPEKVVQWLDSLAFIEENLKITCFAIDESHCISTWGPQFRPAYRDLAVLRQRFPRVPIMALTATATPSVQDDIIASLLLRNPFILKTSFDRPNLFYSVSMKTSLAFDIPRALLQ--HGSSIIYCLRQQDTVDMCTHVQSLGLTAGA--YHAGMAPSKRDEVHRAFANDEIKVVCATIAFGMGI 294          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: V4SCF5_CITCL (ATP-dependent DNA helicase n=3 Tax=Citrus TaxID=2706 RepID=V4SCF5_CITCL)

HSP 1 Score: 204 bits (518), Expect = 7.860e-60
Identity = 120/248 (48.39%), Postives = 158/248 (63.71%), Query Frame = 1
Query:   19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEK-----IAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQG-----ADKQV-ELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            G   +VVSPLISLM+DQV SL+  GI A FLGS  +D  ++ KAE G F L+F+TPEK     I++W   L+A     G+ LFAVDE+HC++EWGHDFR  Y +L  LR     VP +ALTATAT +V  +II +L L++P+V   SF+R NL Y VKV        D+ V E+ + + G  GS IVY MT K+ E+++  + Q+    G   YHG M    R E H  F+RDEI+V+VAT+AFGMGI
Sbjct:   51 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKA-----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGT--YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 290          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A7C3ZM99_9CYAN (DNA helicase n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A7C3ZM99_9CYAN)

HSP 1 Score: 209 bits (531), Expect = 1.630e-59
Identity = 115/243 (47.33%), Postives = 161/243 (66.26%), Query Frame = 1
Query:   25 VTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEG------GEFSLVFVTPEKIAY--WDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            +TVVVSPLI+LM+DQV SLR NGI A FL S    L +E++         G+  L+++ PE++    +   L  IR+  G+  FAVDE+HCV+EWGHDFRP Y +L  +R +YP+VP+MALTATAT RV  +II  L LR P V   SFNR NL+Y V+ +  +   EL +L+   NGS IVY +++++ E +A+++ +      A  YH GM+ T+RRE    F+RD++QV+VAT+AFGMGI
Sbjct:   64 LTVVVSPLIALMQDQVESLRHNGISATFLNS---TLNVEQQRTREMALVKGQVKLLYLAPERLLAERFLPFLDLIRHQVGINAFAVDEAHCVSEWGHDFRPEYRQLRLIRDRYPDVPMMALTATATHRVRLDIIEQLSLRQPLVHIASFNRPNLYYEVRPKNGNSYRELLQLVRASNGSTIVYCLSRRQVETIATKLQK--DGIAALPYHAGMNDTERRENQTRFIRDDVQVMVATIAFGMGI 301          
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: UPI0019DF98EB (DNA helicase RecQ n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019DF98EB)

HSP 1 Score: 207 bits (527), Expect = 1.040e-58
Identity = 110/241 (45.64%), Postives = 161/241 (66.80%), Query Frame = 1
Query:   25 VTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAE---GGEFSLVFVTPEKIAYWDH---GLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729
            +T+VVSPLI+LM+DQV  L+ NGI A FL S +S      + +    G+  L+++ PE++   +     L  ++   G++ FAVDE+HCV+EWGHDFRP Y +LS LR++YP+VP++ALTATAT RV  +I+  L L++PFV   SFNR NL+Y V+ +  +   E+   +    GS I+Y +++K+ E+ AS++ Q+ G R A  YH GMS  DR E    F+RD++QV+VAT+AFGMGI
Sbjct:   70 LTIVVSPLIALMQDQVQLLQDNGIAATFLNSSLSGAQARERTQDVVSGKIKLLYMAPERLLSDESLFSFLPQVKESVGISAFAVDEAHCVSEWGHDFRPEYRQLSHLRQQYPDVPVIALTATATERVREDIMRQLQLKEPFVHIGSFNRPNLYYEVRPKNRNSYREIVEQIRESQGSGIIYCLSRKKVEETASKL-QLDGIR-AVPYHAGMSTEDRAENQSRFIRDDVQVIVATVAFGMGI 308          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9E9_ECTSI1.610e-11170.08ATP-dependent DNA helicase n=1 Tax=Ectocarpus sili... [more]
A0A6H5JXT2_9PHAE3.280e-10569.78DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
W7UB66_9STRA1.430e-6349.18DNA helicase n=1 Tax=Nannochloropsis gaditana TaxI... [more]
A0A4D9DGB0_9STRA1.570e-6348.77DNA helicase n=1 Tax=Nannochloropsis salina CCMP17... [more]
A0A4P9WJD1_9FUNG1.440e-6246.75DNA helicase (Fragment) n=1 Tax=Blyttiomyces helic... [more]
A0A7S0CYG5_9EUKA1.830e-6046.25DNA helicase n=1 Tax=Amorphochlora amoebiformis Ta... [more]
A0A3P3YLC8_PLABS6.740e-6047.01ATP-dependent DNA helicase n=2 Tax=Plasmodiophora ... [more]
V4SCF5_CITCL7.860e-6048.39ATP-dependent DNA helicase n=3 Tax=Citrus TaxID=27... [more]
A0A7C3ZM99_9CYAN1.630e-5947.33DNA helicase n=2 Tax=Oscillatoriales TaxID=1150 Re... [more]
UPI0019DF98EB1.040e-5845.64DNA helicase RecQ n=1 Tax=filamentous cyanobacteri... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9638contigC-tenellus_contig9638:1559..5418 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7G9E9
PFAMsDEAD,HRDC,HTH_40,Helicase_C,RQC,RecQ_Zn_bind
Model size729
Max annot lvl2759|Eukaryota
KEGG koko:K03654
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004518,GO:0004527,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0006139,GO:0006259,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008408,GO:0009987,GO:0016787,GO:0016788,GO:0030145,GO:0031974,GO:0031981,GO:0034641,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0046872,GO:0046914,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:1901360
Exons7
Evalue2.64e-112
EggNOG OGsCOG0514@1|root,KOG0351@2759|Eukaryota
EC3.6.4.12
Descriptionfour-way junction helicase activity
Cds size729
COG categoryL
BRITEko00000,ko00001,ko01000,ko03400
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9638.1.1prot_C-tenellus_contig9638.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9638 1559..5418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790193.3238206-CDS-C-tenellus_contig9638:1558..16271680790193.3238206-CDS-C-tenellus_contig9638:1558..1627Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 1559..1627 +
1680790193.3349853-CDS-C-tenellus_contig9638:2049..21721680790193.3349853-CDS-C-tenellus_contig9638:2049..2172Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 2050..2172 +
1680790193.3468552-CDS-C-tenellus_contig9638:2585..27381680790193.3468552-CDS-C-tenellus_contig9638:2585..2738Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 2586..2738 +
1680790193.3609788-CDS-C-tenellus_contig9638:3508..36341680790193.3609788-CDS-C-tenellus_contig9638:3508..3634Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 3509..3634 +
1680790193.3739896-CDS-C-tenellus_contig9638:3980..40971680790193.3739896-CDS-C-tenellus_contig9638:3980..4097Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 3981..4097 +
1680790193.3868155-CDS-C-tenellus_contig9638:4648..47531680790193.3868155-CDS-C-tenellus_contig9638:4648..4753Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 4649..4753 +
1680790193.3972764-CDS-C-tenellus_contig9638:5382..54181680790193.3972764-CDS-C-tenellus_contig9638:5382..5418Choristocarpus tenellus KU2346CDSC-tenellus_contig9638 5383..5418 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9638.1.1

>prot_C-tenellus_contig9638.1.1 ID=prot_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=243bp
RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKA
EGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFR
PSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFN
RSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQI
VGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI
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mRNA from alignment at C-tenellus_contig9638:1559..5418+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9638.1.1 ID=mRNA_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3860bp|location=Sequence derived from alignment at C-tenellus_contig9638:1559..5418+ (Choristocarpus tenellus KU2346)
CGTAGGCGCCATGGCAGAGGACCTGTCACAGTGGTGGTTAGCCCTCTGAT ATCTCTCATGGAGGACCAGGTGAGCCTTGGATGTTCAATATTACTCACTT AATATCCTGCTGCAAATCATATACATTGAAAGCACTTTGTGGGAATTCGG GTTACCCGATCACAGTTCTGGTTGTTGTTCATTGTTGTCCTTGCTGCAGT TTGTTGATTCCTCACTTAAAGTTGGTTTCTTCTTTTCTTGATCTTGAACA TTGACTCAGGCAACAGTGTAATGTGCGTCAACTGTGTACCCTACCCTTTT TGCAAAATCTTGTTCTTTTTCTTCACAGCAACACAAAGAAGCAGCATGTG AAAAGACATTGGGCTCTGCAATGTTTGACAATTTAGTAGATGGAGGGACC TAAAGTATCATTCACACTCACATCAACACCTTCTAGACACTGTGCTTACC AGGTTATGGACACGTCTGTACTGTTTGATGGGATTCAACAGGTGTTTTCG CTTCGAAGCAATGGAATACCTGCTTGCTTTTTGGGAAGTGGAGTGTCTGA CCTAGGGATCGAACGCAAAGCAGAAGGGGGAGAGTTTTCCTTGGTGTTTG TCACTCCTGAGAAGGTTCGAATTGCGATATTTTTTTTATCAGGGATTGGA TCTTGAGTTGTGTTCTGTGCACGTCCTTTCAATTCTATGTATGTATGGTA GCTATTTGCAATGGGGATTTCTGAGTAGTCCTCTGCAGCAACGCGACATA TTGCTACATTGGTTTTCAGTCAGCAAGTTTGCTTGATTTCACACTCACGG AAGTTGAGGATGGGAGTAATGAACTAGGAATCCTGCTTGTCCACATAAAT GTTATAGCTTGACATATCCTCCCCCCCTGAAATTTGCCTTCCCTTCAAAC TCAATTTGATCACACTCACAATCCTTGGAAGTTTCCGTATGTCTCAACAC CCACAAATTCCTGTCAACTATTGGTTTATATTTTTTTAGTGATCCTGTAA CAGAATCTTGCTTCCAACTGCTGCCAGATAGCCTACTGGGATCATGGACT TCAGGCTATCCGAAATGGCCCAGGTCTGGCCTTGTTTGCTGTTGATGAGA GCCACTGTGTTGCAGAATGGGGCCATGACTTCCGCCCGTCATACCTAGAG CTAAGTTGCCTGCGAAAGAAGTACCCAGAGGTAAGCTTGTCCACCCCTGC ACAGTACATACGTACATTGAAAAGGGAGGAGCCGCTACAGTATGTATGTA GAAACAATTCAAATGTAGTGAGGACACACATCTTCAAAAGTTGTGCTGAG TGTGACTGCAGGATTTGAGTATGCTTTTCTACAAAGGGAGTTGCTATTTC AGCTATGAGGTCAGCTCTCAAAATCCTTATGCAGCTTTTGGCTTGCAGAG TCATGGTGTCTGAGGTTAAGATTGTGTTCAAGGGATTGAGTGCAACATTG TTCTGCTGCCATGAAAGGTTCAACCACTAGCTTAATATAATGCTTCATTT GGTCATTTAGACTGGGAATAAACTCCTTTGGTATGTAGCTCTGGTATGTT ACGATGGAAACTTGAAAGCACACTCATTACTGTAGTGCAACTGTAACAAA ACTATTTTTTACATACCAGTCATCGACATATTTAAAAGTATCTAAATCAA CAGACTGAACAAGTTGAGTTGAATTGCTATACCATTGCACGACATTTGTT TAGCTAGTGACATAGTAAAAGTCAGTACATGCCTAAAGAACCCACATGTT ATCCATGTCCTGTGTCTTGCTGGAAGATTGTGGTCAACTGATACAACCAA CAAGTGAATATCCAGTTACACAATGAATTGTAACTGAACTATTAACTTCA GAGCGGTATACATATCCATTCCACAACTTCTGTAGAATGACATTGACTAA AATATACTAGCACTAAGAGTTCACCATCTTCATTGCGTCACCCAAACCAG GTGCCCATCATGGCCCTCACTGCCACAGCAACACCAAGGGTTGAACGTGA GATAATTGCTAATCTGGGCCTTCGGGATCCCTTTGTGGCAAAGACATCCT TCAATCGGTCTAACCTGCACTACACGGTAAGGGAATGTAGAGTTCAGTAT ACAGAAATATTTCTTGAATCACATGATACTCTCAGTATCATATTGTACTC CTGATCTTCCAATGCTTCTATATAATATCTCTGAACCCAACTGATTTTTA TCAGCCAGGGTGCATTGTTCTGTTGTATATCCTCTGTTTAAGTGTTCGTT GAAGAGTGACAAGTATTGTACTTGTAGTACACCTAAAGCTTGGTCAGCTC CCTCATAGCTCAAACTCCAATAGTAATTCCTAAGGCTAATTTGCTTTAAG TAATACAGAGGATGTGCTCCATCTCTTGTTTGAAGTAATTGAAAGTATGC ACTGTATTCATGTCAAATGCAGGTAAAGGTTCAAGGTGCTGACAAGCAGG TAGAACTTCGCAGGTTGCTCACTGGCCTCAATGGCAGTGCCATTGTCTAT GTTATGACCAAGAAGGAAGCTGAAGATGTGGCATCCCAGGTTTGGTTAAT CCCCCCTCCAGCAGTGCAAGACAGGCATGTGAAATGTGTGCAGAAGCAGC TGAAGTGGATACATAATTCATATGCTTAGGGCATACTCTTGCTCAGTGTG ATGTATATGAGGTGAAAATATCCTGGTGTTCATGTAATGACGAAAATGTT GTATATTATTTCAGAAGGCTTTGACCCACTAGTTTGTGTTGCAGTGTGAT CGCTCCCTTGTGAGTGATGCCATCTAAGAGGGGGGTACTGTGGAGTTTTG TACTGGCCCTATGACTGTCTTGTGATACATGTGTTCCTAGCACTGTGGAG GGAGTTTCAACTATCAAATTGTTTACTTCTACATTTCCACTCTCCTAATT GGGAATAACTCCATTTCTGGCATAGACATGATGTGTATTGCACAAGTTCA AAATGGCCTTGAAAATTCAGAAGGATCAAAACAATCCCACTCTTAGATTA TTTCACTCTTGTGCTGTTTAGGGTTAGGGTTAGGGTTGATGCATGTCAGT GCTGGTGCTGTAGTAATTCTCTTTTTTCCTCTTCTTCCAGGTGTCGCAGA TTGTGGGCTCCCGAGGGGCTCGGGGCTACCATGGTGGTATGTCCTATACA GACCGCAGAGAAGTACACCATGCCTTTCTCAGGGATGAGATACAGGTAGG AAAGACATGCTTAGGCATGTCATGTAAGCATGTCATGTCTCACACGCATG TAGTAACATTGGTGAAAGGAGACACACTCATCATGCATGGAACTTTTTTG GTGATATTGCTCTATCTTTTTTCTACAGCATACATTGACCTACCCAGTGT CTAATTTCAGAAGCCCGAATTCTGCACAGTTGTGCGGATTGTGTATTTGC ATGTGCTATATGTTGCACACTCTATTTTTACATGGAGAGCAAAAATAGAC ATCTTACGTAGGCACTGGAAAATGTTGGTGTTGTTTACCCTTGACCTTCA GTTGCTTTGTTTTGTAAGTTTAGATGATTGCATCCTCAAGTACCTTAGAT ACAATGCACAGTGAACTTGCCTTGTTTTTATTTTTGGGAATGTCAAGCTC CTGTGGCCTGTCAATCTTACATTATTAGGGAAGGTAAGGAAGTACAGTAC TAATCGTTATTGGTCTGAACTCCAAATTGATTCTTATTTGGGTATCTTTA AGGTATGGGGGATCCCCATTTGCAATCAAGGTCCCTGTCATGTCTGCTCC CTTATTCATTTGAAATTGATTGCAACTTGTTCTCTATCCTTATTTTTTTC TTTTTCTATGCTGCTATTCCACAGGTTGTTGTGGCAACACTGGCATTTGG TATGGGCATT
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Coding sequence (CDS) from alignment at C-tenellus_contig9638:1559..5418+

>mRNA_C-tenellus_contig9638.1.1 ID=mRNA_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=729bp|location=Sequence derived from alignment at C-tenellus_contig9638:1559..5418+ (Choristocarpus tenellus KU2346)
CGTAGGCGCCATGGCAGAGGACCTGTCACAGTGGTGGTTAGCCCTCTGAT
ATCTCTCATGGAGGACCAGGTGTTTTCGCTTCGAAGCAATGGAATACCTG
CTTGCTTTTTGGGAAGTGGAGTGTCTGACCTAGGGATCGAACGCAAAGCA
GAAGGGGGAGAGTTTTCCTTGGTGTTTGTCACTCCTGAGAAGATAGCCTA
CTGGGATCATGGACTTCAGGCTATCCGAAATGGCCCAGGTCTGGCCTTGT
TTGCTGTTGATGAGAGCCACTGTGTTGCAGAATGGGGCCATGACTTCCGC
CCGTCATACCTAGAGCTAAGTTGCCTGCGAAAGAAGTACCCAGAGGTGCC
CATCATGGCCCTCACTGCCACAGCAACACCAAGGGTTGAACGTGAGATAA
TTGCTAATCTGGGCCTTCGGGATCCCTTTGTGGCAAAGACATCCTTCAAT
CGGTCTAACCTGCACTACACGGTAAAGGTTCAAGGTGCTGACAAGCAGGT
AGAACTTCGCAGGTTGCTCACTGGCCTCAATGGCAGTGCCATTGTCTATG
TTATGACCAAGAAGGAAGCTGAAGATGTGGCATCCCAGGTGTCGCAGATT
GTGGGCTCCCGAGGGGCTCGGGGCTACCATGGTGGTATGTCCTATACAGA
CCGCAGAGAAGTACACCATGCCTTTCTCAGGGATGAGATACAGGTTGTTG
TGGCAACACTGGCATTTGGTATGGGCATT
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