mRNA_C-tenellus_contig9638.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: D7G9E9_ECTSI (ATP-dependent DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G9E9_ECTSI) HSP 1 Score: 340 bits (872), Expect = 1.610e-111 Identity = 171/244 (70.08%), Postives = 200/244 (81.97%), Query Frame = 1 Query: 1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 R R G GPVT+VVSPLISLMEDQV SL SNGI AC +G G SDL E KA G++ LVFVTPEK++ WDHGL+A++ GPGLAL AVDESHCVAEWGHDFRPSYLEL LR K+P+VP+MALTATATPRV+ EI+ NLGLR+P VAKTSFNR NLHY+VK + E L LL GL GSAI+YVMTK++AE + V++IVGS+GAR YHGGMS DRREVHHAF+RD++QVV+AT+AFGMGI Sbjct: 4 RGRTGTGPVTLVVSPLISLMEDQVLSLASNGISACLVG-GSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDKFPQVPLMALTATATPRVQSEIMTNLGLRNPLVAKTSFNRWNLHYSVKTVNVQSRHEALCSLLRGLEGSAIIYVMTKRDAEQLTGDVARIVGSKGARTYHGGMSPADRREVHHAFIRDDVQVVIATIAFGMGI 246
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A6H5JXT2_9PHAE (DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXT2_9PHAE) HSP 1 Score: 314 bits (805), Expect = 3.280e-105 Identity = 157/225 (69.78%), Postives = 184/225 (81.78%), Query Frame = 1 Query: 58 MEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 MEDQV SL SNGI AC +G G SDL E KA G++ LVFVTPEK++ WDHGL+A++ GPGLAL AVDESHCVAEWGHDFRPSYLEL LR ++P+VPIMALTATATPRV+ EI+ NLGLR+P VAKTSFNR NLHY+VK + E L LL GL GSAI+YVMTKK+AE + V++IVGS+GAR YHGGMS DRREVHHAF+RD++QVV+AT+AFGMGI Sbjct: 1 MEDQVLSLASNGISACLVG-GSSDLRTEEKAIKGDYPLVFVTPEKVSGWDHGLKAMQAGPGLALIAVDESHCVAEWGHDFRPSYLELRSLRDRFPQVPIMALTATATPRVQSEIMTNLGLRNPLVAKTSFNRWNLHYSVKTVNVQSRHEALCSLLRGLEGSAIIYVMTKKDAEQLTGDVARIVGSKGARTYHGGMSPADRREVHHAFIRDDVQVVIATIAFGMGI 224
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: W7UB66_9STRA (DNA helicase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7UB66_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.430e-63 Identity = 120/244 (49.18%), Postives = 172/244 (70.49%), Query Frame = 1 Query: 1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 R + G VTVVVSPL++L+EDQV LR+NGI A +GS ++ +E A G+++L++VTPE++ W L + N GLA A+DE+HCV++WGHDFRP+YL L LR++ P+VPI+A++ATAT V+ +II L L DP V ++ NR NLHYTVK + +E L +L G GSAIVYV+TK EAE++A+ ++ + S A YHGG+S T R++V++ + RDE++VV AT+AFGMG+ Sbjct: 59 RDKKGYRCVTVVVSPLLALIEDQVAGLRANGISALAVGSAATNDEVEG-ALRGDYALLYVTPERLEGWLDSLVTLHNNVGLAALAIDEAHCVSQWGHDFRPAYLLLYKLREQLPDVPIIAVSATATYHVQEDIIQRLRLDDPLVIRSGINRPNLHYTVKSKSPGGPMEDLGGILRGSAGSAIVYVLTKAEAEELATALTNKL-SISASAYHGGLSATVRQQVYNQWSRDEVRVVCATVAFGMGV 300
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A4D9DGB0_9STRA (DNA helicase n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9DGB0_9STRA) HSP 1 Score: 224 bits (570), Expect = 1.570e-63 Identity = 119/244 (48.77%), Postives = 172/244 (70.49%), Query Frame = 1 Query: 1 RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVE-LRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 R + G VTVVVSPL++L+EDQV LR+NGI A +GS ++ +E A G+++L++VTPE++ W L + N GLA A+DE+HCV++WGHDFRP+YL L LR++ P+VPI+A++ATAT V+ +I+ L L DP V ++ NR NLHYTVK + +E L +L G GSAIVYV+TK EAE++A+ ++ + S A YHGG+S T R++V++ + RDE++VV AT+AFGMG+ Sbjct: 427 RDKKGYRCVTVVVSPLLALIEDQVAGLRANGISALAVGSAATNDEVEG-ALRGDYALLYVTPERLEGWLDSLVTLHNNVGLAALAIDEAHCVSQWGHDFRPAYLLLYKLREQLPDVPIIAVSATATHHVQEDIVQQLRLDDPLVIRSGINRPNLHYTVKSKSPGGPMEDLGGILRGSAGSAIVYVLTKAEAEELATALTNKL-SISASAYHGGLSATVRQQVYNQWSRDEVRVVCATVAFGMGV 668
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A4P9WJD1_9FUNG (DNA helicase (Fragment) n=1 Tax=Blyttiomyces helicus TaxID=388810 RepID=A0A4P9WJD1_9FUNG) HSP 1 Score: 210 bits (535), Expect = 1.440e-62 Identity = 115/246 (46.75%), Postives = 159/246 (64.63%), Query Frame = 1 Query: 19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIR--NGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGAD-KQVELRRLLT------GLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 G VV+SPLISLMEDQV + GI A FLGS D +E +A GE+S++++TPEK W GL+ I + G+ +FA+DE+HCV+EWGHDFRP + +L+ LR+ +P+ PIMALTATATP V +I NL LRD A T FNR NL Y V+ + A KQ R L ++GS +VY ++K+ E+VA+ + + S A YH G+ + R ++H F++D++QV+VAT AFGMGI Sbjct: 138 GKTAVVISPLISLMEDQVMHMTKCGISAAFLGSAQVDSSVELRAMKGEYSILYLTPEKAIRWTTGLRKINQFSKGGICMFAIDEAHCVSEWGHDFRPEFRQLNMLREAFPKTPIMALTATATPTVAADIKTNLKLRDLHQATTGFNRPNLSYHVQFKSAAVKQDRYRDDLAFIWDERAVSGSTVVYCPSRKQTEEVAAFLREQGVSSAA--YHAGLLPSQRTQLHRKFMQDDLQVLVATSAFGMGI 381
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A7S0CYG5_9EUKA (DNA helicase n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CYG5_9EUKA) HSP 1 Score: 215 bits (548), Expect = 1.830e-60 Identity = 111/240 (46.25%), Postives = 157/240 (65.42%), Query Frame = 1 Query: 19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVK---VQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 G +V+SPLISLMEDQV SL + AC L S D + + A G++ LV+++PE+I W G+Q + GPG+ LFA+DE+HC++EWGHDFR +Y L+ LR ++P +PIMALTATAT RV +++ +L ++ P + + +R NLHY++K V D L R G GS IVY +++K+ ED+A ++ GAR YHG + + R E+H+ F D+IQVVVATLAFGMGI Sbjct: 54 GKPGIVISPLISLMEDQVKSLTQVNVSACALTSANHDRDVWKGAREGKYKLVYMSPERIDVWVDGIQELEAGPGICLFAIDEAHCISEWGHDFRSAYRSLAKLRDRFPTIPIMALTATATARVVTDVVKSLKMKSPAILTSPLDRPNLHYSIKSKNVAELDLSPALFRQAAG--GSVIVYCLSRKKTEDIARMLTS--RGIGARAYHGSLPSSRRSEIHNLFSFDKIQVVVATLAFGMGI 289
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A3P3YLC8_PLABS (ATP-dependent DNA helicase n=2 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A3P3YLC8_PLABS) HSP 1 Score: 213 bits (541), Expect = 6.740e-60 Identity = 110/234 (47.01%), Postives = 157/234 (67.09%), Query Frame = 1 Query: 28 TVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEKIAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 TVV+SPLI+LM+DQ +L GI +CFL S D + A GE+ ++F++PEK+ W L I + FA+DESHC++ WG FRP+Y +L+ LR+++P VPIMALTATATP V+ +IIA+L LR+PF+ KTSF+R NL Y+V ++ + R LL +GS+I+Y + +++ D+ + V + + GA YH GM+ + R EVH AF DEI+VV AT+AFGMGI Sbjct: 65 TVVISPLIALMKDQSMALDQRGISSCFLNSTQRDQRVWEAARRGEYQIIFLSPEKVVQWLDSLAFIEENLKITCFAIDESHCISTWGPQFRPAYRDLAVLRQRFPRVPIMALTATATPSVQDDIIASLLLRNPFILKTSFDRPNLFYSVSMKTSLAFDIPRALLQ--HGSSIIYCLRQQDTVDMCTHVQSLGLTAGA--YHAGMAPSKRDEVHRAFANDEIKVVCATIAFGMGI 294
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: V4SCF5_CITCL (ATP-dependent DNA helicase n=3 Tax=Citrus TaxID=2706 RepID=V4SCF5_CITCL) HSP 1 Score: 204 bits (518), Expect = 7.860e-60 Identity = 120/248 (48.39%), Postives = 158/248 (63.71%), Query Frame = 1 Query: 19 GPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEGGEFSLVFVTPEK-----IAYWDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQG-----ADKQV-ELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 G +VVSPLISLM+DQV SL+ GI A FLGS +D ++ KAE G F L+F+TPEK I++W L+A G+ LFAVDE+HC++EWGHDFR Y +L LR VP +ALTATAT +V +II +L L++P+V SF+R NL Y VKV D+ V E+ + + G GS IVY MT K+ E+++ + Q+ G YHG M R E H F+RDEI+V+VAT+AFGMGI Sbjct: 51 GKTALVVSPLISLMQDQVMSLKQRGINAEFLGSAQTDSSVQTKAETGYFQLLFMTPEKACIIPISFWSKLLKA-----GVCLFAVDEAHCISEWGHDFRLEYKQLDKLRTFLLGVPFVALTATATEKVRIDIINSLKLKNPYVTIASFDRKNLFYGVKVINRGQSFVDELVQEILKSVAGA-GSIIVYCMTIKDVEEISKALKQLGVKAGT--YHGQMGSKAREEAHRLFIRDEIRVMVATMAFGMGI 290
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: A0A7C3ZM99_9CYAN (DNA helicase n=2 Tax=Oscillatoriales TaxID=1150 RepID=A0A7C3ZM99_9CYAN) HSP 1 Score: 209 bits (531), Expect = 1.630e-59 Identity = 115/243 (47.33%), Postives = 161/243 (66.26%), Query Frame = 1 Query: 25 VTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAEG------GEFSLVFVTPEKIAY--WDHGLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 +TVVVSPLI+LM+DQV SLR NGI A FL S L +E++ G+ L+++ PE++ + L IR+ G+ FAVDE+HCV+EWGHDFRP Y +L +R +YP+VP+MALTATAT RV +II L LR P V SFNR NL+Y V+ + + EL +L+ NGS IVY +++++ E +A+++ + A YH GM+ T+RRE F+RD++QV+VAT+AFGMGI Sbjct: 64 LTVVVSPLIALMQDQVESLRHNGISATFLNS---TLNVEQQRTREMALVKGQVKLLYLAPERLLAERFLPFLDLIRHQVGINAFAVDEAHCVSEWGHDFRPEYRQLRLIRDRYPDVPMMALTATATHRVRLDIIEQLSLRQPLVHIASFNRPNLYYEVRPKNGNSYRELLQLVRASNGSTIVYCLSRRQVETIATKLQK--DGIAALPYHAGMNDTERRENQTRFIRDDVQVMVATIAFGMGI 301
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Match: UPI0019DF98EB (DNA helicase RecQ n=1 Tax=filamentous cyanobacterium LEGE 11480 TaxID=2777977 RepID=UPI0019DF98EB) HSP 1 Score: 207 bits (527), Expect = 1.040e-58 Identity = 110/241 (45.64%), Postives = 161/241 (66.80%), Query Frame = 1 Query: 25 VTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAE---GGEFSLVFVTPEKIAYWDH---GLQAIRNGPGLALFAVDESHCVAEWGHDFRPSYLELSCLRKKYPEVPIMALTATATPRVEREIIANLGLRDPFVAKTSFNRSNLHYTVKVQGADKQVELRRLLTGLNGSAIVYVMTKKEAEDVASQVSQIVGSRGARGYHGGMSYTDRREVHHAFLRDEIQVVVATLAFGMGI 729 +T+VVSPLI+LM+DQV L+ NGI A FL S +S + + G+ L+++ PE++ + L ++ G++ FAVDE+HCV+EWGHDFRP Y +LS LR++YP+VP++ALTATAT RV +I+ L L++PFV SFNR NL+Y V+ + + E+ + GS I+Y +++K+ E+ AS++ Q+ G R A YH GMS DR E F+RD++QV+VAT+AFGMGI Sbjct: 70 LTIVVSPLIALMQDQVQLLQDNGIAATFLNSSLSGAQARERTQDVVSGKIKLLYMAPERLLSDESLFSFLPQVKESVGISAFAVDEAHCVSEWGHDFRPEYRQLSHLRQQYPDVPVIALTATATERVREDIMRQLQLKEPFVHIGSFNRPNLYYEVRPKNRNSYREIVEQIRESQGSGIIYCLSRKKVEETASKL-QLDGIR-AVPYHAGMSTEDRAENQSRFIRDDVQVIVATVAFGMGI 308 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9638.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9638.1.1 >prot_C-tenellus_contig9638.1.1 ID=prot_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=243bp RRRHGRGPVTVVVSPLISLMEDQVFSLRSNGIPACFLGSGVSDLGIERKAback to top mRNA from alignment at C-tenellus_contig9638:1559..5418+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9638.1.1 ID=mRNA_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3860bp|location=Sequence derived from alignment at C-tenellus_contig9638:1559..5418+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9638:1559..5418+ >mRNA_C-tenellus_contig9638.1.1 ID=mRNA_C-tenellus_contig9638.1.1|Name=mRNA_C-tenellus_contig9638.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=729bp|location=Sequence derived from alignment at C-tenellus_contig9638:1559..5418+ (Choristocarpus tenellus KU2346)back to top |