mRNA_C-tenellus_contig9507.3.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE) HSP 1 Score: 236 bits (603), Expect = 6.980e-68 Identity = 161/382 (42.15%), Postives = 205/382 (53.66%), Query Frame = 1 Query: 76 TMNAQEVIARPLDMIRNV--ELGSSADEEVD-GDGSDPVQRA-FDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVSTENGAVSNKRARDSDDYR------------------MDYTINESGDSDPCIPTPTPSYHRHNKIICLSP--ESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFH--QELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL-PPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 TM+ E+IARPLD+I + EL +S + D DG + A + LC L+RVP+LS+++L G L+ANSLVRYRGM+QD Y+PEYFVGS++E+E+ATG+R R KY +S+A RPGFVN+Y+GP KTM+RLPLFCVP+PG S WA+PP G MD T +E GD++ + P E +TP D G S R T FH QE+EL LAC+VKMY +EG++KLND +FVGVL YDQA+ PPQ V G GG +GG+ G N F+GLEDFSR+VPP SLAPRLHCV Sbjct: 6 TMDVDELIARPLDVIARLRGELKASGNNSTDTSDGESALLGATISDALCSG---SSPALDRVPILSRESLAKGKLAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVPIPGQSQWAIPPNQGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMDCTADEIGDAEAASGDKNGAPKPKTLRAAAGPTSEGARTPHAD----GHSSSVAASNDQRPNST----FHHEQEIELAGLACVVKMYDFREGQIKLNDMTEFVGVLGYDQAVTPPQEDEDV----PMGEGG----AGGATG----------NPFQGLEDFSRKVPPPSLAPRLHCV 358
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: D8LEY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY8_ECTSI) HSP 1 Score: 213 bits (542), Expect = 3.620e-62 Identity = 135/307 (43.97%), Postives = 175/307 (57.00%), Query Frame = 1 Query: 274 LTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVSTENGAVSNKRARDSDDYR--------MDYTINESGDSDPCI----PTPTPSYHRHNKIICLSPESVQTPSND---PGIEGEDSQRGGVGGVRGTDTVSTNFH--QELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL-PPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 + G L+ANSLVRYRGM+QD Y+PEYFVGS++E+E+ATG+R R KY +S+A RPGFVN+Y+GP KTM+RLPLFCVP+PG S WA+PP G+ MD T +E GD++ P P R S E +TP+ D + + QR ++ FH QE++L+ LAC++KMY +EG++KLNDT +FVGVL YDQA+ PPQ V G GG +GG+ G N F+GLEDFSR+VPP SLAPRLHCV Sbjct: 1 MQGKLAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVPIPGQSQWAIPPNQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMDCTADEIGDAEATSGDKNSAPKPKTLR--AAAGPSSEGARTPNADGHSSSVTASNEQR-----------PNSTFHHEQEIDLDGLACVIKMYDFREGQVKLNDTAEFVGVLGYDQAVTPPQEDEDV----PMGEGG----AGGATG----------NPFQGLEDFSRKVPPPSLAPRLHCV 276
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A7S4D9L4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9L4_HETAK) HSP 1 Score: 117 bits (292), Expect = 6.340e-28 Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1 Query: 97 IARPLDMI-----RNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWA 531 +A PL+ I R++E G +++ + G V+RA D L Q PT E VP+L+ ++L G L +SLV+Y GM+QD++D E+F G Y+EV S+TG + SKY ES+ + D+E P+ KT+ERLPL+C P+PGLSPWA Sbjct: 12 LAAPLNTISECFVRHLEGGDTSNNKNWG-----VKRALDSYLKQN-PTAH---ELVPILTAESLKAGTLPNHSLVKYIGMVQDIFDLEFFCGVYEEVNSSTGEKKLATSKYLESIPPKANIQPDFESPKSKTLERLPLYCTPIPGLSPWA 152
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A1Y1IQF2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQF2_KLENI) HSP 1 Score: 106 bits (265), Expect = 1.880e-21 Identity = 97/361 (26.87%), Postives = 156/361 (43.21%), Query Frame = 1 Query: 85 AQEVIARPLDMIRNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVV----LERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTEN-GAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPA-----SLAPRLHCV 1137 A + +A PL IR + D+ V G P Q + + F GE+ + VP+L+ +L +L + +LVR++GM+QDM+DPEY+VG++ E S+T T++ Y +A+ GP+ + ER L+CVP+PG S W+ R S GA KR RD ++ + + E G++ + Q ++ G+ +++ GG G + + L L CLVK+Y + LKLND +FVG+L +D PQ+ + GS G E + G + ++PP+ S PRL C+ Sbjct: 5 ATDCLANPLGCIRQL-----FDKAVTN-GMTPQQLGSSDWGAKEFFAGEIAKLGGADMVPLLNSTSL--DLLPSGTLVRFQGMVQDMFDPEYYVGAFKETPSSTWHTTKYTDVYDVPIAS---------GPDAQVWERKLLYCVPIPGQSDWS-----RGTRPTSLNGPGAHREKRPRDDEEMSIAEPMLEEGEA--------------GQESIGEQAKRQREASSSGMS--NNETGGCG------LLGEGMNLPLPSLLLPCLVKVYDDADAGLKLNDVAEFVGILTFD----PQL-----------------AAAGSVGRGEPASGMPGEGAAG-DSLDEELPPSLRLSPSKVPRLQCI 299
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI001E1D2227 (mini-chromosome maintenance complex-binding protein-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2227) HSP 1 Score: 106 bits (264), Expect = 2.610e-21 Identity = 104/347 (29.97%), Postives = 151/347 (43.52%), Query Frame = 1 Query: 97 IARPLDMIRNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 I PL +I+ + +D+ DGD S PV++ F E L L VP L+ +L L ANSLVRYR MIQDMYDPE+++G Y+ ++ATG KY + D + TM+R+ L+CVPVPG + W +V + + S RAR + + ++E C S + N I + E ++ + V G+ + NF E + ACLVK+Y + K+ND V+FVGVL D +L + C G ++ N +E E E+ + PP SL PRLH V Sbjct: 8 INNPLGIIQTL-----SDKPQDGDCS-PVRKYFSEKLASRS-----ALTWVPSLNDSSLHN--LKANSLVRYRCMIQDMYDPEFYLGKYEVKDTATGNTFMRSGKYKDIAECGANQTKDVDSRNNVTMDRMTLYCVPVPGEAEWVKKSYADMSKVKTHSYPSTSTTRARGKRNLEDETEVSEEPMESQC--PDAESKNGDNSAISMETEEEKSKRQQTARK--------VDGL--CEKPDLNFPLPGE-KGPACLVKVYD-DIDKFKVNDVVEFVGVLSVDPSLA-RFQNDRCEEE-----GDSMI-------NVVE--------ETPEEMNAHAPPPSLVPRLHAV 306
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A1S3ZWV8_TOBAC (mini-chromosome maintenance complex-binding protein n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZWV8_TOBAC) HSP 1 Score: 103 bits (256), Expect = 2.640e-20 Identity = 103/358 (28.77%), Postives = 144/358 (40.22%), Query Frame = 1 Query: 97 IARPLDMIRNVELGSSADEEVDGDGSDPVQRAFD-------ELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSD----DYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 +A PL +R E+ GSDP FD +L Q F + L +VP L+ + + N+LVR+RGMIQDM E++VG+Y E E T R +F +AT P+++ ER L+CVPVPG + W P G + + + KR RD D D M T E DS + R + I S S TP+ GV +V NF + C VK+Y E +LKLND +F+GV +D P G+N+LE +D Q+PP+ + PRLHC+ Sbjct: 9 LANPLGAVR------LTFEKAVASGSDPA--TFDGKDWGATDLFSQ-FLFDDGGLSKVPFLNPSTM--SWVQPNTLVRFRGMIQDMLGNEFYVGAYKEGE--TWRTNKFADFSQFPMATG-------SSPDMRVWERRLLYCVPVPGQNSWIEPSSGALLNPRAISSSPQREKRQRDKDLAMNDVNMQVTDEEVQDST------SNKKMREDGIASGSSNSGSTPTE---------------GVGSATSVLPNF----DTTSFPCFVKIYDSPESDLKLNDVFEFIGVFTFDPEFPVD----------------------KNGNNDLESSFY-------DDTLVQIPPSKV-PRLHCL 291
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: I1HCC1_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HCC1_BRADI) HSP 1 Score: 101 bits (252), Expect = 8.770e-20 Identity = 97/356 (27.25%), Postives = 159/356 (44.66%), Query Frame = 1 Query: 91 EVIARPLDMIRNVELGSSADEEVDGDGSDPVQ--RAFDELLCQAFPT---GEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVST-ENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 +++ PL +R+ ++A + G DPV RA D + F + + +++VPVL L G++ N+LVR+RGM+QDM E++ G++ + +T R +F S T P + + ER L CVPVPG + W + PG + +S +KR RD DD MD + N +G+ P + + SPE + P + G+D + +F +CLVK+Y + E ++KLND +F+GV +D P++ V +S D++ F+ LED + Q+PP+ + PRLHC+ Sbjct: 7 DLVGNPLGAVRSTFERAAAAAAAESGGRDPVAAFRAKDWGATEVFRSFLFDQGGIDKVPVLDASNL--GLIKPNTLVRFRGMVQDMLGSEFYAGAFKD--GSTWRTNKFTDF---SPFTMPHPCDSH------LWERHLLHCVPVPGQNSWTMESSPGPDLRQMSNCSTSEQRDKRKRDGDDDAMDVSENGNGEGSSFSKKPKEDGVQGSSS---SPEMPVSEDRVPEMNGDDHH------------IPGSF--------FSCLVKVYDMPESQVKLNDVAEFIGVYTFD----PELAAPVDNS-------DDIM------------------FDLLEDVTAQLPPSKV-PRLHCL 296
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A2K3MXW8_TRIPR (Mini-chromosome maintenance complex-binding protein (Fragment) n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3MXW8_TRIPR) HSP 1 Score: 99.4 bits (246), Expect = 5.100e-19 Identity = 90/294 (30.61%), Postives = 136/294 (46.26%), Query Frame = 1 Query: 91 EVIARPLDMIRNVELGSSADEEVDGDGSDPVQR------AFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRF--ISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL 948 +++A PL +R S+ D + GSDP A D L + F + + L +VP+L+ + + N+LVRYRGMIQDM E++VG Y + + R +F IS+Y + + E + ER L+CVPVPGL+PWA P P +V +S + + ++ R DD D T+ D D +P R + L+ + +G V + G+ ST+ L +C+VK+Y E ELKLND +FVG+L D L Sbjct: 7 DLLANPLGAVR-----STFDTAIVS-GSDPTSLNGRDWGAVD--LFRHFLSDQSQLSQVPLLTPSTIR--FVKPNTLVRYRGMIQDMLGNEFYVGVYKD--GSVWRTNKFTDISQYPIPMDSSA---------ETRIWERRLLYCVPVPGLNPWAEPSP-EAVGNLSMDWASEQREKRRRGDDESSDMTV----DGDEVEGSPNTKRMREGECPSLASQP----------------QGAVPEIAGS---STSLMHGLSGNSASCIVKIYDAPESELKLNDIFEFVGILTSDPEL 255
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI0018D7C0A6 (mini-chromosome maintenance complex-binding protein-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7C0A6) HSP 1 Score: 99.4 bits (246), Expect = 5.850e-19 Identity = 83/300 (27.67%), Postives = 133/300 (44.33%), Query Frame = 1 Query: 238 LERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 LE VP L+ +L +L N++VR+R MIQDMYDPE+++G+Y+ V+ ++G+ T + + + E + T++R +CVPVP + W V+ TE+ S R+ + + P PS + V + D + S+ V R T +V NF E + AC+VK+Y E +LND ++F+GVL D P++ +H+ GT + G A+ EG+E+ + PP SL PRLH + Sbjct: 93 LEWVPSLNHTSL--HLLKPNTVVRFRCMIQDMYDPEFYLGAYEVVDKSSGQVTMKSGMFQDLAECSQNQRLNLESSKNVTLDRQTFYCVPVPAETEW--------VKQAFTEHSCCQTSDPSTSQSSRVKRALEVDDLTPSTSQLPVPSQTGDHGA------DVSMETTDGNQSEKRSRMSEVTSQRSTTSVDLNFPLSGE-KGPACMVKVYDNFES-FRLNDVIEFIGVLSVD----PELANVPACNHNGGT--SSAIDG-------------ADLMEGIEEQAAHSPPPSLVPRLHAI 355
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI000B794D9D (mini-chromosome maintenance complex-binding protein-like n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B794D9D) HSP 1 Score: 98.6 bits (244), Expect = 9.290e-19 Identity = 96/323 (29.72%), Postives = 141/323 (43.65%), Query Frame = 1 Query: 205 LCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRF--ISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTE--NGAVSN--KRARDSDDYRMDYTINESGDSDPCIPTPTPSYHR---HNKIICLSPESVQ---TPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137 L + F + L +VP+L+ A L ANSLVR+RGMIQDM E +VG+Y + +T R +F + ++ ++ P++K ER L+CVPVPGL+ WA P VE +S + N A KR RD DD +D+ E G + C +P R H + ++V+ TPS P + E+ CLVK+Y E +LKLN+ +F+GVL YD L N+ E + +N ED Q+PP+ + PR+HC+ Sbjct: 43 LFRQFLFDDGGLSQVPILN--AASVKYLLANSLVRFRGMIQDMLGNEVYVGAYKD--GSTWRTNKFSDVCQFEMDMS-----------PDMKFWERRLLYCVPVPGLNSWAEP-----VEALSNQQRNFATQQREKRPRDDDDETVDHM--ELGSNQDCEDSPITKKMREEGHPSSSSMQQDTVKEGTTPSFGP--------------------------PDSEINSFPCLVKVYDSPESDLKLNEIFEFIGVLNYDPELSL---------------------------NKDESDMQSNDL--YEDDLVQLPPSKV-PRIHCL 287 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig9507.3.1 >prot_C-tenellus_contig9507.3.1 ID=prot_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=379bp IGQDTKIKTKDIRSTDKSNKDRTFGTMNAQEVIARPLDMIRNVELGSSADback to top mRNA from alignment at C-tenellus_contig9507:3629..5446+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig9507.3.1 ID=mRNA_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1818bp|location=Sequence derived from alignment at C-tenellus_contig9507:3629..5446+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig9507:3629..5446+ >mRNA_C-tenellus_contig9507.3.1 ID=mRNA_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1137bp|location=Sequence derived from alignment at C-tenellus_contig9507:3629..5446+ (Choristocarpus tenellus KU2346)back to top |