mRNA_C-tenellus_contig9507.3.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig9507.3.1
Unique NamemRNA_C-tenellus_contig9507.3.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A6H5KW72_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KW72_9PHAE)

HSP 1 Score: 236 bits (603), Expect = 6.980e-68
Identity = 161/382 (42.15%), Postives = 205/382 (53.66%), Query Frame = 1
Query:   76 TMNAQEVIARPLDMIRNV--ELGSSADEEVD-GDGSDPVQRA-FDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVSTENGAVSNKRARDSDDYR------------------MDYTINESGDSDPCIPTPTPSYHRHNKIICLSP--ESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFH--QELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL-PPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            TM+  E+IARPLD+I  +  EL +S +   D  DG   +  A   + LC         L+RVP+LS+++L  G L+ANSLVRYRGM+QD Y+PEYFVGS++E+E+ATG+R R   KY +S+A RPGFVN+Y+GP  KTM+RLPLFCVP+PG S WA+PP  G                                           MD T +E GD++        +           P  E  +TP  D    G  S        R   T    FH  QE+EL  LAC+VKMY  +EG++KLND  +FVGVL YDQA+ PPQ    V      G GG    +GG+ G          N F+GLEDFSR+VPP SLAPRLHCV
Sbjct:    6 TMDVDELIARPLDVIARLRGELKASGNNSTDTSDGESALLGATISDALCSG---SSPALDRVPILSRESLAKGKLAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVPIPGQSQWAIPPNQGEQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMDCTADEIGDAEAASGDKNGAPKPKTLRAAAGPTSEGARTPHAD----GHSSSVAASNDQRPNST----FHHEQEIELAGLACVVKMYDFREGQIKLNDMTEFVGVLGYDQAVTPPQEDEDV----PMGEGG----AGGATG----------NPFQGLEDFSRKVPPPSLAPRLHCV 358          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: D8LEY8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEY8_ECTSI)

HSP 1 Score: 213 bits (542), Expect = 3.620e-62
Identity = 135/307 (43.97%), Postives = 175/307 (57.00%), Query Frame = 1
Query:  274 LTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVSTENGAVSNKRARDSDDYR--------MDYTINESGDSDPCI----PTPTPSYHRHNKIICLSPESVQTPSND---PGIEGEDSQRGGVGGVRGTDTVSTNFH--QELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL-PPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            + G L+ANSLVRYRGM+QD Y+PEYFVGS++E+E+ATG+R R   KY +S+A RPGFVN+Y+GP  KTM+RLPLFCVP+PG S WA+PP  G+                                MD T +E GD++         P P   R       S E  +TP+ D     +   + QR            ++ FH  QE++L+ LAC++KMY  +EG++KLNDT +FVGVL YDQA+ PPQ    V      G GG    +GG+ G          N F+GLEDFSR+VPP SLAPRLHCV
Sbjct:    1 MQGKLAANSLVRYRGMVQDQYEPEYFVGSFEELETATGKRNRVDVKYVDSIAQRPGFVNEYDGPGAKTMDRLPLFCVPIPGQSQWAIPPNQGQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDAMDCTADEIGDAEATSGDKNSAPKPKTLR--AAAGPSSEGARTPNADGHSSSVTASNEQR-----------PNSTFHHEQEIDLDGLACVIKMYDFREGQVKLNDTAEFVGVLGYDQAVTPPQEDEDV----PMGEGG----AGGATG----------NPFQGLEDFSRKVPPPSLAPRLHCV 276          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A7S4D9L4_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D9L4_HETAK)

HSP 1 Score: 117 bits (292), Expect = 6.340e-28
Identity = 65/150 (43.33%), Postives = 94/150 (62.67%), Query Frame = 1
Query:   97 IARPLDMI-----RNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWA 531
            +A PL+ I     R++E G +++ +  G     V+RA D  L Q  PT     E VP+L+ ++L  G L  +SLV+Y GM+QD++D E+F G Y+EV S+TG +    SKY ES+  +     D+E P+ KT+ERLPL+C P+PGLSPWA
Sbjct:   12 LAAPLNTISECFVRHLEGGDTSNNKNWG-----VKRALDSYLKQN-PTAH---ELVPILTAESLKAGTLPNHSLVKYIGMVQDIFDLEFFCGVYEEVNSSTGEKKLATSKYLESIPPKANIQPDFESPKSKTLERLPLYCTPIPGLSPWA 152          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A1Y1IQF2_KLENI (Uncharacterized protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IQF2_KLENI)

HSP 1 Score: 106 bits (265), Expect = 1.880e-21
Identity = 97/361 (26.87%), Postives = 156/361 (43.21%), Query Frame = 1
Query:   85 AQEVIARPLDMIRNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVV----LERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTEN-GAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPA-----SLAPRLHCV 1137
            A + +A PL  IR +      D+ V   G  P Q    +   + F  GE+      + VP+L+  +L   +L + +LVR++GM+QDM+DPEY+VG++ E  S+T   T++   Y   +A+         GP+ +  ER  L+CVP+PG S W+     R     S    GA   KR RD ++  +   + E G++               +         Q  ++  G+   +++ GG G       +    +  L    L CLVK+Y   +  LKLND  +FVG+L +D    PQ+                  + GS G  E    +      G +    ++PP+     S  PRL C+
Sbjct:    5 ATDCLANPLGCIRQL-----FDKAVTN-GMTPQQLGSSDWGAKEFFAGEIAKLGGADMVPLLNSTSL--DLLPSGTLVRFQGMVQDMFDPEYYVGAFKETPSSTWHTTKYTDVYDVPIAS---------GPDAQVWERKLLYCVPIPGQSDWS-----RGTRPTSLNGPGAHREKRPRDDEEMSIAEPMLEEGEA--------------GQESIGEQAKRQREASSSGMS--NNETGGCG------LLGEGMNLPLPSLLLPCLVKVYDDADAGLKLNDVAEFVGILTFD----PQL-----------------AAAGSVGRGEPASGMPGEGAAG-DSLDEELPPSLRLSPSKVPRLQCI 299          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI001E1D2227 (mini-chromosome maintenance complex-binding protein-like isoform X1 n=2 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D2227)

HSP 1 Score: 106 bits (264), Expect = 2.610e-21
Identity = 104/347 (29.97%), Postives = 151/347 (43.52%), Query Frame = 1
Query:   97 IARPLDMIRNVELGSSADEEVDGDGSDPVQRAFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            I  PL +I+ +     +D+  DGD S PV++ F E L          L  VP L+  +L    L ANSLVRYR MIQDMYDPE+++G Y+  ++ATG       KY +          D +     TM+R+ L+CVPVPG + W         +V +    + S  RAR   +   +  ++E      C      S +  N  I +  E  ++       +        V G+   +    NF    E +  ACLVK+Y     + K+ND V+FVGVL  D +L  +     C        G  ++       N +E        E  E+ +   PP SL PRLH V
Sbjct:    8 INNPLGIIQTL-----SDKPQDGDCS-PVRKYFSEKLASRS-----ALTWVPSLNDSSLHN--LKANSLVRYRCMIQDMYDPEFYLGKYEVKDTATGNTFMRSGKYKDIAECGANQTKDVDSRNNVTMDRMTLYCVPVPGEAEWVKKSYADMSKVKTHSYPSTSTTRARGKRNLEDETEVSEEPMESQC--PDAESKNGDNSAISMETEEEKSKRQQTARK--------VDGL--CEKPDLNFPLPGE-KGPACLVKVYD-DIDKFKVNDVVEFVGVLSVDPSLA-RFQNDRCEEE-----GDSMI-------NVVE--------ETPEEMNAHAPPPSLVPRLHAV 306          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A1S3ZWV8_TOBAC (mini-chromosome maintenance complex-binding protein n=5 Tax=Nicotiana TaxID=4085 RepID=A0A1S3ZWV8_TOBAC)

HSP 1 Score: 103 bits (256), Expect = 2.640e-20
Identity = 103/358 (28.77%), Postives = 144/358 (40.22%), Query Frame = 1
Query:   97 IARPLDMIRNVELGSSADEEVDGDGSDPVQRAFD-------ELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSD----DYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            +A PL  +R         E+    GSDP    FD       +L  Q F   +  L +VP L+   +    +  N+LVR+RGMIQDM   E++VG+Y E E  T R  +F       +AT          P+++  ER  L+CVPVPG + W  P  G  +   +  +     KR RD D    D  M  T  E  DS       +    R + I   S  S  TP+                GV    +V  NF    +     C VK+Y   E +LKLND  +F+GV  +D   P                          G+N+LE           +D   Q+PP+ + PRLHC+
Sbjct:    9 LANPLGAVR------LTFEKAVASGSDPA--TFDGKDWGATDLFSQ-FLFDDGGLSKVPFLNPSTM--SWVQPNTLVRFRGMIQDMLGNEFYVGAYKEGE--TWRTNKFADFSQFPMATG-------SSPDMRVWERRLLYCVPVPGQNSWIEPSSGALLNPRAISSSPQREKRQRDKDLAMNDVNMQVTDEEVQDST------SNKKMREDGIASGSSNSGSTPTE---------------GVGSATSVLPNF----DTTSFPCFVKIYDSPESDLKLNDVFEFIGVFTFDPEFPVD----------------------KNGNNDLESSFY-------DDTLVQIPPSKV-PRLHCL 291          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: I1HCC1_BRADI (Uncharacterized protein n=2 Tax=Brachypodium distachyon TaxID=15368 RepID=I1HCC1_BRADI)

HSP 1 Score: 101 bits (252), Expect = 8.770e-20
Identity = 97/356 (27.25%), Postives = 159/356 (44.66%), Query Frame = 1
Query:   91 EVIARPLDMIRNVELGSSADEEVDGDGSDPVQ--RAFDELLCQAFPT---GEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPP-PGRSVEVVST-ENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            +++  PL  +R+    ++A    +  G DPV   RA D    + F +    +  +++VPVL    L  G++  N+LVR+RGM+QDM   E++ G++ +   +T R  +F      S  T P   + +        ER  L CVPVPG + W +   PG  +  +S        +KR RD DD  MD + N +G+       P     + +     SPE   +    P + G+D              +  +F         +CLVK+Y + E ++KLND  +F+GV  +D    P++   V +S        D++                  F+ LED + Q+PP+ + PRLHC+
Sbjct:    7 DLVGNPLGAVRSTFERAAAAAAAESGGRDPVAAFRAKDWGATEVFRSFLFDQGGIDKVPVLDASNL--GLIKPNTLVRFRGMVQDMLGSEFYAGAFKD--GSTWRTNKFTDF---SPFTMPHPCDSH------LWERHLLHCVPVPGQNSWTMESSPGPDLRQMSNCSTSEQRDKRKRDGDDDAMDVSENGNGEGSSFSKKPKEDGVQGSSS---SPEMPVSEDRVPEMNGDDHH------------IPGSF--------FSCLVKVYDMPESQVKLNDVAEFIGVYTFD----PELAAPVDNS-------DDIM------------------FDLLEDVTAQLPPSKV-PRLHCL 296          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: A0A2K3MXW8_TRIPR (Mini-chromosome maintenance complex-binding protein (Fragment) n=3 Tax=Trifolium TaxID=3898 RepID=A0A2K3MXW8_TRIPR)

HSP 1 Score: 99.4 bits (246), Expect = 5.100e-19
Identity = 90/294 (30.61%), Postives = 136/294 (46.26%), Query Frame = 1
Query:   91 EVIARPLDMIRNVELGSSADEEVDGDGSDPVQR------AFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRF--ISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQAL 948
            +++A PL  +R     S+ D  +   GSDP         A D  L + F + +  L +VP+L+   +    +  N+LVRYRGMIQDM   E++VG Y +   +  R  +F  IS+Y   + +           E +  ER  L+CVPVPGL+PWA P P  +V  +S +  +   ++ R  DD   D T+    D D    +P     R  +   L+ +                 +G V  + G+   ST+    L     +C+VK+Y   E ELKLND  +FVG+L  D  L
Sbjct:    7 DLLANPLGAVR-----STFDTAIVS-GSDPTSLNGRDWGAVD--LFRHFLSDQSQLSQVPLLTPSTIR--FVKPNTLVRYRGMIQDMLGNEFYVGVYKD--GSVWRTNKFTDISQYPIPMDSSA---------ETRIWERRLLYCVPVPGLNPWAEPSP-EAVGNLSMDWASEQREKRRRGDDESSDMTV----DGDEVEGSPNTKRMREGECPSLASQP----------------QGAVPEIAGS---STSLMHGLSGNSASCIVKIYDAPESELKLNDIFEFVGILTSDPEL 255          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI0018D7C0A6 (mini-chromosome maintenance complex-binding protein-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D7C0A6)

HSP 1 Score: 99.4 bits (246), Expect = 5.850e-19
Identity = 83/300 (27.67%), Postives = 133/300 (44.33%), Query Frame = 1
Query:  238 LERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRARDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            LE VP L+  +L   +L  N++VR+R MIQDMYDPE+++G+Y+ V+ ++G+ T     + +          + E  +  T++R   +CVPVP  + W        V+   TE+          S   R+   +     +      P PS    +         V   + D     + S+   V   R T +V  NF    E +  AC+VK+Y   E   +LND ++F+GVL  D    P++      +H+ GT     + G             A+  EG+E+ +   PP SL PRLH +
Sbjct:   93 LEWVPSLNHTSL--HLLKPNTVVRFRCMIQDMYDPEFYLGAYEVVDKSSGQVTMKSGMFQDLAECSQNQRLNLESSKNVTLDRQTFYCVPVPAETEW--------VKQAFTEHSCCQTSDPSTSQSSRVKRALEVDDLTPSTSQLPVPSQTGDHGA------DVSMETTDGNQSEKRSRMSEVTSQRSTTSVDLNFPLSGE-KGPACMVKVYDNFES-FRLNDVIEFIGVLSVD----PELANVPACNHNGGT--SSAIDG-------------ADLMEGIEEQAAHSPPPSLVPRLHAI 355          
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Match: UPI000B794D9D (mini-chromosome maintenance complex-binding protein-like n=2 Tax=Chenopodium quinoa TaxID=63459 RepID=UPI000B794D9D)

HSP 1 Score: 98.6 bits (244), Expect = 9.290e-19
Identity = 96/323 (29.72%), Postives = 141/323 (43.65%), Query Frame = 1
Query:  205 LCQAFPTGEVVLERVPVLSKQALLTGVLSANSLVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRF--ISKYTESLATRPGFVNDYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTE--NGAVSN--KRARDSDDYRMDYTINESGDSDPCIPTPTPSYHR---HNKIICLSPESVQ---TPSNDPGIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKLNDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEKKILANRFEGLEDFSRQVPPASLAPRLHCV 1137
            L + F   +  L +VP+L+  A     L ANSLVR+RGMIQDM   E +VG+Y +   +T R  +F  + ++   ++           P++K  ER  L+CVPVPGL+ WA P     VE +S +  N A     KR RD DD  +D+   E G +  C  +P     R   H     +  ++V+   TPS  P                           + E+    CLVK+Y   E +LKLN+  +F+GVL YD  L                             N+ E  + +N     ED   Q+PP+ + PR+HC+
Sbjct:   43 LFRQFLFDDGGLSQVPILN--AASVKYLLANSLVRFRGMIQDMLGNEVYVGAYKD--GSTWRTNKFSDVCQFEMDMS-----------PDMKFWERRLLYCVPVPGLNSWAEP-----VEALSNQQRNFATQQREKRPRDDDDETVDHM--ELGSNQDCEDSPITKKMREEGHPSSSSMQQDTVKEGTTPSFGP--------------------------PDSEINSFPCLVKVYDSPESDLKLNEIFEFIGVLNYDPELSL---------------------------NKDESDMQSNDL--YEDDLVQLPPSKV-PRIHCL 287          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig9507.3.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KW72_9PHAE6.980e-6842.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LEY8_ECTSI3.620e-6243.97Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S4D9L4_HETAK6.340e-2843.33Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A1Y1IQF2_KLENI1.880e-2126.87Uncharacterized protein n=1 Tax=Klebsormidium nite... [more]
UPI001E1D22272.610e-2129.97mini-chromosome maintenance complex-binding protei... [more]
A0A1S3ZWV8_TOBAC2.640e-2028.77mini-chromosome maintenance complex-binding protei... [more]
I1HCC1_BRADI8.770e-2027.25Uncharacterized protein n=2 Tax=Brachypodium dista... [more]
A0A2K3MXW8_TRIPR5.100e-1930.61Mini-chromosome maintenance complex-binding protei... [more]
UPI0018D7C0A65.850e-1927.67mini-chromosome maintenance complex-binding protei... [more]
UPI000B794D9D9.290e-1929.72mini-chromosome maintenance complex-binding protei... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig9507contigC-tenellus_contig9507:3629..5446 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LEY8
Preferred nameMCMBP
PFAMsMCM_bind
Model size1138
Max annot lvl2759|Eukaryota
KEGG koko:K06997
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000785,GO:0000790,GO:0000819,GO:0003674,GO:0003682,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0005886,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006725,GO:0006807,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0016020,GO:0016043,GO:0022402,GO:0031974,GO:0031981,GO:0032991,GO:0033260,GO:0034641,GO:0034645,GO:0042555,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0046483,GO:0051276,GO:0070013,GO:0071704,GO:0071840,GO:0071944,GO:0090304,GO:0098813,GO:1901360,GO:1901576,GO:1902969,GO:1903047
Exons3
Evalue5.94e-63
EggNOG OGsKOG2545@1|root,KOG2545@2759|Eukaryota
Descriptionsister chromatid cohesion
Cds size1137
COG categoryQ
BRITEko00000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790180.1191614-CDS-C-tenellus_contig9507:3628..41131680790180.1191614-CDS-C-tenellus_contig9507:3628..4113Choristocarpus tenellus KU2346CDSC-tenellus_contig9507 3629..4113 +
1680790180.1369822-CDS-C-tenellus_contig9507:4461..46181680790180.1369822-CDS-C-tenellus_contig9507:4461..4618Choristocarpus tenellus KU2346CDSC-tenellus_contig9507 4462..4618 +
1680790180.172592-CDS-C-tenellus_contig9507:4951..54461680790180.172592-CDS-C-tenellus_contig9507:4951..5446Choristocarpus tenellus KU2346CDSC-tenellus_contig9507 4952..5446 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig9507.3.1prot_C-tenellus_contig9507.3.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig9507 3629..5446 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig9507.3.1

>prot_C-tenellus_contig9507.3.1 ID=prot_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=379bp
IGQDTKIKTKDIRSTDKSNKDRTFGTMNAQEVIARPLDMIRNVELGSSAD
EEVDGDGSDPVQRAFDELLCQAFPTGEVVLERVPVLSKQALLTGVLSANS
LVRYRGMIQDMYDPEYFVGSYDEVESATGRRTRFISKYTESLATRPGFVN
DYEGPEVKTMERLPLFCVPVPGLSPWAVPPPGRSVEVVSTENGAVSNKRA
RDSDDYRMDYTINESGDSDPCIPTPTPSYHRHNKIICLSPESVQTPSNDP
GIEGEDSQRGGVGGVRGTDTVSTNFHQELELEDLACLVKMYGLKEGELKL
NDTVDFVGVLVYDQALPPQMLGGVCHSHSSGTGGQDVVSGGSAGHNELEK
KILANRFEGLEDFSRQVPPASLAPRLHCV
back to top

mRNA from alignment at C-tenellus_contig9507:3629..5446+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig9507.3.1 ID=mRNA_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1818bp|location=Sequence derived from alignment at C-tenellus_contig9507:3629..5446+ (Choristocarpus tenellus KU2346)
ATAGGTCAAGACACCAAAATCAAGACCAAGGACATTCGGAGTACAGACAA GTCGAACAAAGATAGAACCTTCGGTACTATGAATGCCCAAGAGGTCATCG CAAGGCCCCTGGACATGATACGAAATGTTGAGCTAGGGTCCAGTGCCGAC GAGGAAGTCGATGGGGATGGTTCTGACCCCGTTCAACGAGCATTTGATGA GTTGCTGTGCCAGGCTTTCCCCACAGGAGAAGTAGTGCTTGAAAGAGTGC CTGTCCTATCTAAGCAGGCCTTGCTAACCGGAGTTCTATCAGCAAACTCA TTGGTTCGCTACAGGGGTATGATTCAGGACATGTACGATCCTGAGTACTT CGTAGGATCGTATGATGAGGTAGAGTCAGCAACTGGGAGGAGGACACGGT TCATCTCGAAGTATACAGAATCTCTGGCGACTAGACCCGGCTTCGTAAAC GACTACGAGGGTCCGGAAGTAAAGACTATGGAACGGTGAGTGCAGTGCGT TGTGTATCTGTTTTTTCGTTCTATATACTTTTGCGTGAAGATCGTATGTG TGCCCTCTACACACCCGTCCCTCCACTCTGAATCATTGGCAAGCGCAAAC TCATGTTCGCCTTGCTATGCCGGTATAATGGTCCACCTCGGGCTATAGTA TCATATACATATTACTGCAATAACGGGACCCCAAATTTCGACTTATCTAC TGTGTCACCAATGGAACTAGAAATGGATTACGCGACAATACTCCCTTCGA ATTTCCTGCATCGACCTTATCACCTAACCACTAAGCACCACCAATGCCGA ACTTCCTCAATCTCTATCCTGTTCGTTGTACAGTCTTCCCTTGTTTTGTG TGCCTGTACCAGGACTTTCTCCTTGGGCGGTACCCCCGCCAGGACGCTCT GTGGAAGTTGTCAGCACCGAAAATGGTGCAGTATCAAACAAGCGGGCGCG GGACTCTGATGACTACAGAATGGATTATACAATAAATGAGGTTGTTCAAA TACATCTTCTTGGTCCTGAGTGTGGCCCATTACTCATGCGCATTCCCATT GCCTTGAACCTGTCCCGTACTAATGTATCATCAGGGCAAGCGTCTCTGCA CTATATTTGTCGTCTCGTACTTCTAAAGTTACATCAATGTTATCGCTCTA AATGCTACAACAAGTTGCACACCAGCCACTATCCCTGTATGCATTAAGAT AGACCTTCCCCTTCCATGAAATACCCATTTGTGTGGCCTCTTTTCCTATC CCCTCCCTGATCAGCTTCTTTTTATAACATTGTTGATCAGGACAGCACTG GTTTGGAAGTGTCCAAGCCAGAGTCTGGAGACAGCGATCCTTGTATTCCA ACCCCCACGCCCTCCTATCACCGGCACAACAAAATAATATGCTTATCGCC TGAGAGTGTCCAGACACCTTCAAATGATCCAGGCATTGAGGGAGAGGATT CCCAAAGGGGTGGGGTTGGGGGGGTTAGAGGCACTGATACTGTGAGCACC AACTTCCATCAAGAGCTTGAACTCGAAGATCTTGCTTGCCTAGTGAAAAT GTATGGGTTGAAAGAGGGGGAGCTGAAGCTTAATGACACGGTTGATTTCG TGGGTGTACTGGTGTACGACCAGGCACTTCCACCACAGATGTTAGGTGGT GTTTGTCACAGCCACTCTAGTGGTACTGGTGGCCAAGATGTTGTCTCTGG GGGGAGTGCAGGGCACAATGAGTTGGAGAAGAAAATCCTGGCCAATCGGT TTGAAGGCCTCGAGGACTTCTCAAGACAGGTTCCCCCGGCAAGTTTGGCA CCTCGCCTGCACTGCGTA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig9507:3629..5446+

>mRNA_C-tenellus_contig9507.3.1 ID=mRNA_C-tenellus_contig9507.3.1|Name=mRNA_C-tenellus_contig9507.3.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1137bp|location=Sequence derived from alignment at C-tenellus_contig9507:3629..5446+ (Choristocarpus tenellus KU2346)
ATAGGTCAAGACACCAAAATCAAGACCAAGGACATTCGGAGTACAGACAA
GTCGAACAAAGATAGAACCTTCGGTACTATGAATGCCCAAGAGGTCATCG
CAAGGCCCCTGGACATGATACGAAATGTTGAGCTAGGGTCCAGTGCCGAC
GAGGAAGTCGATGGGGATGGTTCTGACCCCGTTCAACGAGCATTTGATGA
GTTGCTGTGCCAGGCTTTCCCCACAGGAGAAGTAGTGCTTGAAAGAGTGC
CTGTCCTATCTAAGCAGGCCTTGCTAACCGGAGTTCTATCAGCAAACTCA
TTGGTTCGCTACAGGGGTATGATTCAGGACATGTACGATCCTGAGTACTT
CGTAGGATCGTATGATGAGGTAGAGTCAGCAACTGGGAGGAGGACACGGT
TCATCTCGAAGTATACAGAATCTCTGGCGACTAGACCCGGCTTCGTAAAC
GACTACGAGGGTCCGGAAGTAAAGACTATGGAACGTCTTCCCTTGTTTTG
TGTGCCTGTACCAGGACTTTCTCCTTGGGCGGTACCCCCGCCAGGACGCT
CTGTGGAAGTTGTCAGCACCGAAAATGGTGCAGTATCAAACAAGCGGGCG
CGGGACTCTGATGACTACAGAATGGATTATACAATAAATGAGTCTGGAGA
CAGCGATCCTTGTATTCCAACCCCCACGCCCTCCTATCACCGGCACAACA
AAATAATATGCTTATCGCCTGAGAGTGTCCAGACACCTTCAAATGATCCA
GGCATTGAGGGAGAGGATTCCCAAAGGGGTGGGGTTGGGGGGGTTAGAGG
CACTGATACTGTGAGCACCAACTTCCATCAAGAGCTTGAACTCGAAGATC
TTGCTTGCCTAGTGAAAATGTATGGGTTGAAAGAGGGGGAGCTGAAGCTT
AATGACACGGTTGATTTCGTGGGTGTACTGGTGTACGACCAGGCACTTCC
ACCACAGATGTTAGGTGGTGTTTGTCACAGCCACTCTAGTGGTACTGGTG
GCCAAGATGTTGTCTCTGGGGGGAGTGCAGGGCACAATGAGTTGGAGAAG
AAAATCCTGGCCAATCGGTTTGAAGGCCTCGAGGACTTCTCAAGACAGGT
TCCCCCGGCAAGTTTGGCACCTCGCCTGCACTGCGTA
back to top