mRNA_C-tenellus_contig917.4.2 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE) HSP 1 Score: 239 bits (610), Expect = 1.210e-69 Identity = 129/170 (75.88%), Postives = 138/170 (81.18%), Query Frame = 1 Query: 103 MNPNKRPPPSSG-GTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPT 609 MNPNKRPPPSS GTFEG KR RD KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVK N+ER+W+FN+GPPLEG+ PG+ PAPT Sbjct: 1 MNPNKRPPPSSSTGTFEGGDAT------KRARDHPD--------KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVT--PAPT 154
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA) HSP 1 Score: 140 bits (353), Expect = 8.860e-39 Identity = 71/130 (54.62%), Postives = 89/130 (68.46%), Query Frame = 1 Query: 166 ETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 555 E H KR RDD P +LRPG P NVLLVR+++I +PV + AL IFSRFG+V K+V+FDKGSG QALVQ A A A ++ D+Q+MY+ CN IRVGYSNL N+TVK NS+R+W+F G Sbjct: 42 EDRDHAKRPRDDQP---------MLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI) HSP 1 Score: 137 bits (345), Expect = 7.530e-34 Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1 Query: 232 KILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQ 453 KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQ Sbjct: 76 KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK) HSP 1 Score: 124 bits (312), Expect = 6.150e-30 Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 1 Query: 160 LRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 555 + E KR RD+ QS+ LRPG P NV LVRI++I +P TI AL IF RFG V KIV FDKGSG QAL+Q V A A +A DMQ+MY+ CN IRVG+SNL +TVK N++R+W+F G Sbjct: 10 MDEVYGDQKRARDE------QSS---LRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA) HSP 1 Score: 117 bits (294), Expect = 3.570e-27 Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 1 Query: 238 LRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPTT 612 LRPG +P NV+L RITD + PVT+ AL +FS +G V KIVMF+KG+G QALVQ DV A +A+E AD + MY+ NLIRVGYS ++ V+AN++R W++ EG+A G PA TT Sbjct: 273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAG----PADTT 393
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL) HSP 1 Score: 100 bits (250), Expect = 1.610e-21 Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 603 P P +LL IT++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+ADV A A E D Q +Y+GCN I+V YS+L + +K N+ER+W+F L G+ G + P+ Sbjct: 146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL) HSP 1 Score: 100 bits (250), Expect = 3.360e-21 Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 1 Query: 244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 603 P P +LL IT++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+ADV A A E D Q +Y+GCN I+V YS+L + +K N+ER+W+F L G+ G + P+ Sbjct: 146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5) HSP 1 Score: 100 bits (248), Expect = 6.560e-21 Identity = 45/101 (44.55%), Postives = 71/101 (70.30%), Query Frame = 1 Query: 244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 546 P P +LL IT++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+ADV A A E D Q +Y+GCN I+V YS+L + VK N+ER+W+F Sbjct: 142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDF 242
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: L8HLM4_ACACA (HnRNPL/PTB/hephaestus splicing factor subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM4_ACACA) HSP 1 Score: 99.0 bits (245), Expect = 1.550e-20 Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 1 Query: 247 GQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF-NVGPPLEGAAAPGI 588 G EQ ++LLV +T++V+PVTI L Q+FS++G + KIV+F K G QAL+QM D QA +A +A D Q +YSGC +R+ YSNL ++ VK N++++ +F N P AA P + Sbjct: 200 GDEQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSK-KGFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNLPSLNVKYNNDKSRDFTNNNLPSGDAAGPAV 313
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH) HSP 1 Score: 97.8 bits (242), Expect = 3.950e-20 Identity = 43/101 (42.57%), Postives = 71/101 (70.30%), Query Frame = 1 Query: 244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 546 P P ++LL IT++V+PVT+ + Q+ ++FG ++K+++F++G+ QALVQ+AD+ A A D Q +Y+GCN I+V YS+L + VK N+ER+W+F Sbjct: 142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDF 242 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig917.4.2 >prot_C-tenellus_contig917.4.2 ID=prot_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp MNPNKRPPPSSGGTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQback to top mRNA from alignment at C-tenellus_contig917:14559..15775+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig917.4.2 ID=mRNA_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1217bp|location=Sequence derived from alignment at C-tenellus_contig917:14559..15775+ (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig917:14559..15775+ >mRNA_C-tenellus_contig917.4.2 ID=mRNA_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig917:14559..15775+ (Choristocarpus tenellus KU2346)back to top |