mRNA_C-tenellus_contig917.4.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig917.4.2
Unique NamemRNA_C-tenellus_contig917.4.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 1.210e-69
Identity = 129/170 (75.88%), Postives = 138/170 (81.18%), Query Frame = 1
Query:  103 MNPNKRPPPSSG-GTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPT 609
            MNPNKRPPPSS  GTFEG          KR RD           KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVK N+ER+W+FN+GPPLEG+  PG+   PAPT
Sbjct:    1 MNPNKRPPPSSSTGTFEGGDAT------KRARDHPD--------KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVT--PAPT 154          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 8.860e-39
Identity = 71/130 (54.62%), Postives = 89/130 (68.46%), Query Frame = 1
Query:  166 ETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 555
            E   H KR RDD P         +LRPG   P NVLLVR+++I +PV + AL  IFSRFG+V K+V+FDKGSG QALVQ A    A  A ++ D+Q+MY+ CN IRVGYSNL N+TVK NS+R+W+F  G
Sbjct:   42 EDRDHAKRPRDDQP---------MLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 7.530e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 1
Query:  232 KILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQ 453
            KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQ
Sbjct:   76 KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 124 bits (312), Expect = 6.150e-30
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 1
Query:  160 LRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 555
            + E     KR RD+      QS+   LRPG   P NV LVRI++I +P TI AL  IF RFG V KIV FDKGSG QAL+Q   V  A  A +A DMQ+MY+ CN IRVG+SNL  +TVK N++R+W+F  G
Sbjct:   10 MDEVYGDQKRARDE------QSS---LRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 3.570e-27
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 1
Query:  238 LRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPTT 612
            LRPG  +P NV+L RITD + PVT+ AL  +FS +G V KIVMF+KG+G QALVQ  DV  A +A+E AD + MY+  NLIRVGYS   ++ V+AN++R W++      EG+A  G    PA TT
Sbjct:  273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAG----PADTT 393          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL)

HSP 1 Score: 100 bits (250), Expect = 1.610e-21
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 603
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + +K N+ER+W+F     L G+   G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL)

HSP 1 Score: 100 bits (250), Expect = 3.360e-21
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 1
Query:  244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 603
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + +K N+ER+W+F     L G+   G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5)

HSP 1 Score: 100 bits (248), Expect = 6.560e-21
Identity = 45/101 (44.55%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 546
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + VK N+ER+W+F
Sbjct:  142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDF 242          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: L8HLM4_ACACA (HnRNPL/PTB/hephaestus splicing factor subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM4_ACACA)

HSP 1 Score: 99.0 bits (245), Expect = 1.550e-20
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 1
Query:  247 GQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF-NVGPPLEGAAAPGI 588
            G EQ  ++LLV +T++V+PVTI  L Q+FS++G + KIV+F K  G QAL+QM D  QA +A +A D Q +YSGC  +R+ YSNL ++ VK N++++ +F N   P   AA P +
Sbjct:  200 GDEQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSK-KGFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNLPSLNVKYNNDKSRDFTNNNLPSGDAAGPAV 313          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH)

HSP 1 Score: 97.8 bits (242), Expect = 3.950e-20
Identity = 43/101 (42.57%), Postives = 71/101 (70.30%), Query Frame = 1
Query:  244 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 546
            P    P ++LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+AD+  A  A    D Q +Y+GCN I+V YS+L  + VK N+ER+W+F
Sbjct:  142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDF 242          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ42_9PHAE1.210e-6975.88RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XYL8_9STRA8.860e-3954.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FN53_ECTSI7.530e-3493.24PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=... [more]
A0A7S3UWL0_HETAK6.150e-3052.27Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0W9_9STRA3.570e-2751.20RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7J6SYV6_PEROL1.610e-2140.00Uncharacterized protein n=2 Tax=Perkinsus TaxID=28... [more]
A0A7J6LFE9_PEROL3.360e-2140.00Uncharacterized protein n=5 Tax=Perkinsus olseni T... [more]
C5L0S5_PERM56.560e-2144.55Polypyrimidine tract binding protein, putative n=1... [more]
L8HLM4_ACACA1.550e-2046.09HnRNPL/PTB/hephaestus splicing factor subfamily pr... [more]
A0A7J6MLJ2_PERCH3.950e-2042.57Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig917contigC-tenellus_contig917:14559..15775 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FN53
PFAMsRRM_1,RRM_5
Model size612
Max annot lvl2759|Eukaryota
KEGG koko:K13218,ko:K14948
Hectar predicted targeting categoryother localisation
Exons3
Evalue3.79e-35
EggNOG OGsKOG1190@1|root,KOG1190@2759|Eukaryota
Ec32 ortholog descriptionhuman PTB (hnRNP) homolog family member (ptb-1)
Ec32 orthologEc-06_008430.1
Descriptionregulation of secretory granule organization
Cds size510
COG categoryO
BRITEko00000,ko03019,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790151.2399442-UTR-C-tenellus_contig917:14558..146601680790151.2399442-UTR-C-tenellus_contig917:14558..14660Choristocarpus tenellus KU2346UTRC-tenellus_contig917 14559..14660 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790151.2545147-CDS-C-tenellus_contig917:14660..148611680790151.2545147-CDS-C-tenellus_contig917:14660..14861Choristocarpus tenellus KU2346CDSC-tenellus_contig917 14661..14861 +
1680790151.2649586-CDS-C-tenellus_contig917:15088..152381680790151.2649586-CDS-C-tenellus_contig917:15088..15238Choristocarpus tenellus KU2346CDSC-tenellus_contig917 15089..15238 +
1680790151.2744758-CDS-C-tenellus_contig917:15616..157751680790151.2744758-CDS-C-tenellus_contig917:15616..15775Choristocarpus tenellus KU2346CDSC-tenellus_contig917 15617..15775 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig917.4.2prot_C-tenellus_contig917.4.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig917 14661..15775 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig917.4.2

>prot_C-tenellus_contig917.4.2 ID=prot_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
MNPNKRPPPSSGGTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQ
EQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQ
MADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNV
GPPLEGAAAPGINGIPAPTT
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mRNA from alignment at C-tenellus_contig917:14559..15775+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig917.4.2 ID=mRNA_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1217bp|location=Sequence derived from alignment at C-tenellus_contig917:14559..15775+ (Choristocarpus tenellus KU2346)
AATCGATTGTAGGGCGGTGATCATCAGAGACAGGAAGAGGAACCCAAGTG CAATCGTTAAACCACTTGGCAGAATTCAAACTTTGGGCAGTACGTGAACT CAATGAACCCAAACAAGAGACCCCCGCCTTCCTCCGGGGGGACATTTGAG GGGAATGGTCTCAGGGAGACAGCATCACATCCCAAACGAGTGAGGGATGA TGTCCCCGGAGGCGGGGGTCAAAGTGCCGGAAAGATCCTACGACCTGGAC AGGAGCAGCCGGGAAACGTCCTGCTTGTCCGCATTACTGATATTGTGCAC CCAGTAAGTATAAATGCCATTTCCAAGGTTGGGTACGCAACATATTTTTT AATATCTTTGTACATGGGCGAATTTAGACAATGTGCTTCTAGTGAGGTCC TCAACCTCCTAGTGTGAGCTGCAGGGGTGTCGGAGTTCGTAACGCCAATT TCAAATCACTGATGCCAATATATTCTTTATTTGATAGTCTCACTGATGCC TAACTACCCTATTATATGTTGTGATATCAGGTAACGATCCTGGCACTTCA GCAGATTTTTTCTCGTTTCGGCAAGGTGGATAAAATCGTCATGTTCGACA AAGGGTCTGGGTGTCAAGCTCTAGTGCAAATGGCAGATGTATACCAGGCG ATGTCTGCGCACGAGGCAGCTGATATGCAGGTACTCTACAATTGTGAATG AGGAGTTAATTTTCTCCGTATGACTGGAGCACTAGTTCTCCCTCAATTCT GTCGTCCAGATATATTTTTTGTCCTATGTTTATGCCCGACTTTTGTAATA ATATACCGATGTGCTATCCCTGGCATCTATAGGTCGGTCTTTGTGTGTCA TTCTGTCCTTGTGTACTTACTGAAATCTATTTCATGTGTATCTCATGTTT CATCTTACTTTGTCTAATATACATTTTTGTATATTAAATGAAACTGTACT CCTATCACTTATCCTTTTTCAGTGATGGCATTAAACGAGCACCAGCCTTC TATATCCTTTTTTTTACTAATACCTTGTGAAATTACTGTTGTTTCACACA TGCCACAGGAGATGTACTCTGGCTGCAACCTCATTCGAGTGGGCTACAGC AACCTGCAGAATGTAACGGTAAAGGCGAACAGTGAACGAGCGTGGAACTT CAATGTCGGTCCACCCCTTGAGGGCGCAGCGGCACCAGGTATCAACGGTA TTCCAGCCCCCACCACT
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Coding sequence (CDS) from alignment at C-tenellus_contig917:14559..15775+

>mRNA_C-tenellus_contig917.4.2 ID=mRNA_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=510bp|location=Sequence derived from alignment at C-tenellus_contig917:14559..15775+ (Choristocarpus tenellus KU2346)
ATGAACCCAAACAAGAGACCCCCGCCTTCCTCCGGGGGGACATTTGAGGG
GAATGGTCTCAGGGAGACAGCATCACATCCCAAACGAGTGAGGGATGATG
TCCCCGGAGGCGGGGGTCAAAGTGCCGGAAAGATCCTACGACCTGGACAG
GAGCAGCCGGGAAACGTCCTGCTTGTCCGCATTACTGATATTGTGCACCC
AGTAACGATCCTGGCACTTCAGCAGATTTTTTCTCGTTTCGGCAAGGTGG
ATAAAATCGTCATGTTCGACAAAGGGTCTGGGTGTCAAGCTCTAGTGCAA
ATGGCAGATGTATACCAGGCGATGTCTGCGCACGAGGCAGCTGATATGCA
GGAGATGTACTCTGGCTGCAACCTCATTCGAGTGGGCTACAGCAACCTGC
AGAATGTAACGGTAAAGGCGAACAGTGAACGAGCGTGGAACTTCAATGTC
GGTCCACCCCTTGAGGGCGCAGCGGCACCAGGTATCAACGGTATTCCAGC
CCCCACCACT
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