prot_C-tenellus_contig917.4.2 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig917.4.2
Unique Nameprot_C-tenellus_contig917.4.2
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length170
Homology
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A6H5KZ42_9PHAE (RRM domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ42_9PHAE)

HSP 1 Score: 239 bits (610), Expect = 3.230e-70
Identity = 129/170 (75.88%), Postives = 138/170 (81.18%), Query Frame = 0
Query:    1 MNPNKRPPPSSG-GTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPT 169
            MNPNKRPPPSS  GTFEG          KR RD           KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVK N+ER+W+FN+GPPLEG+  PG+   PAPT
Sbjct:    1 MNPNKRPPPSSSTGTFEGGDAT------KRARDHPD--------KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHSAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKGNTERSWDFNIGPPLEGSLPPGVT--PAPT 154          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S2XYL8_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYL8_9STRA)

HSP 1 Score: 140 bits (353), Expect = 2.750e-39
Identity = 71/130 (54.62%), Postives = 89/130 (68.46%), Query Frame = 0
Query:   22 ETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 151
            E   H KR RDD P         +LRPG   P NVLLVR+++I +PV + AL  IFSRFG+V K+V+FDKGSG QALVQ A    A  A ++ D+Q+MY+ CN IRVGYSNL N+TVK NS+R+W+F  G
Sbjct:   42 EDRDHAKRPRDDQP---------MLRPGSTTPSNVLLVRVSNIFYPVQLDALHTIFSRFGEVQKVVLFDKGSGFQALVQYASEEPAKLAFDSVDLQDMYTNCNTIRVGYSNLNNITVKQNSDRSWDFTTG 162          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: D7FN53_ECTSI (PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN53_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.310e-34
Identity = 69/74 (93.24%), Postives = 72/74 (97.30%), Query Frame = 0
Query:   44 KILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQ 117
            KILRPGQEQPGNVLLVR+TDIVHPVTILALQQIFSRFGKVDKIVMFDKGSG QALVQMA+V+ AMSAHEAADMQ
Sbjct:   76 KILRPGQEQPGNVLLVRVTDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGSQALVQMANVHTAMSAHEAADMQ 149          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7S3UWL0_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWL0_HETAK)

HSP 1 Score: 124 bits (312), Expect = 1.990e-30
Identity = 69/132 (52.27%), Postives = 85/132 (64.39%), Query Frame = 0
Query:   20 LRETASHPKRVRDDVPGGGGQSAGKILRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVG 151
            + E     KR RD+      QS+   LRPG   P NV LVRI++I +P TI AL  IF RFG V KIV FDKGSG QAL+Q   V  A  A +A DMQ+MY+ CN IRVG+SNL  +TVK N++R+W+F  G
Sbjct:   10 MDEVYGDQKRARDE------QSS---LRPGGNVPSNVCLVRISNIFYPPTIDALHTIFRRFGNVIKIVCFDKGSGYQALIQYDSVEAATQAFQAVDMQDMYTNCNTIRVGFSNLTEITVKNNTDRSWDFTTG 132          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A4D9D0W9_9STRA (RRM domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D0W9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 1.180e-27
Identity = 64/125 (51.20%), Postives = 84/125 (67.20%), Query Frame = 0
Query:   46 LRPGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPAPTT 170
            LRPG  +P NV+L RITD + PVT+ AL  +FS +G V KIVMF+KG+G QALVQ  DV  A +A+E AD + MY+  NLIRVGYS   ++ V+AN++R W++      EG+A  G    PA TT
Sbjct:  273 LRPGTSEPSNVILARITDGLFPVTLDALYTLFSFYGPVQKIVMFNKGAGNQALVQYPDVASAQAAYEQADHRNMYTDSNLIRVGYSTHHDIKVRANTDRTWDYTKKKTSEGSAPAG----PADTT 393          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6SYV6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6SYV6_PEROL)

HSP 1 Score: 100 bits (250), Expect = 5.730e-22
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 0
Query:   48 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 167
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + +K N+ER+W+F     L G+   G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6LFE9_PEROL (Uncharacterized protein n=5 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6LFE9_PEROL)

HSP 1 Score: 100 bits (250), Expect = 1.180e-21
Identity = 48/120 (40.00%), Postives = 78/120 (65.00%), Query Frame = 0
Query:   48 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNVGPPLEGAAAPGINGIPA 167
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + +K N+ER+W+F     L G+   G +  P+
Sbjct:  146 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVETANIAKEQLDGQNIYAGCNTIKVQYSSLPQLEIKHNNERSWDFTNPNLLSGSVGGGSSLTPS 265          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: C5L0S5_PERM5 (Polypyrimidine tract binding protein, putative n=1 Tax=Perkinsus marinus (strain ATCC 50983 / TXsc) TaxID=423536 RepID=C5L0S5_PERM5)

HSP 1 Score: 100 bits (248), Expect = 2.300e-21
Identity = 45/101 (44.55%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   48 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 148
            P    P  +LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+ADV  A  A E  D Q +Y+GCN I+V YS+L  + VK N+ER+W+F
Sbjct:  142 PDSNPPNRILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADVDTANVAKEQLDGQNIYAGCNTIKVQYSSLPQLEVKHNNERSWDF 242          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: L8HLM4_ACACA (HnRNPL/PTB/hephaestus splicing factor subfamily protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8HLM4_ACACA)

HSP 1 Score: 99.0 bits (245), Expect = 5.490e-21
Identity = 53/115 (46.09%), Postives = 78/115 (67.83%), Query Frame = 0
Query:   49 GQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF-NVGPPLEGAAAPGI 162
            G EQ  ++LLV +T++V+PVTI  L Q+FS++G + KIV+F K  G QAL+QM D  QA +A +A D Q +YSGC  +R+ YSNL ++ VK N++++ +F N   P   AA P +
Sbjct:  200 GDEQSNHILLVTVTNLVYPVTIDILHQVFSKYGAIHKIVIFSK-KGFQALIQMGDKNQAQAAKQALDGQNIYSGCCTLRIQYSNLPSLNVKYNNDKSRDFTNNNLPSGDAAGPAV 313          
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Match: A0A7J6MLJ2_PERCH (Uncharacterized protein n=1 Tax=Perkinsus chesapeaki TaxID=330153 RepID=A0A7J6MLJ2_PERCH)

HSP 1 Score: 97.8 bits (242), Expect = 1.400e-20
Identity = 43/101 (42.57%), Postives = 71/101 (70.30%), Query Frame = 0
Query:   48 PGQEQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQMADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNF 148
            P    P ++LL  IT++V+PVT+  + Q+ ++FG ++K+++F++G+  QALVQ+AD+  A  A    D Q +Y+GCN I+V YS+L  + VK N+ER+W+F
Sbjct:  142 PDSNPPNHILLFTITNLVYPVTVDVISQVMNKFGGLEKVIVFNRGNAVQALVQLADLETANIAKAQLDGQNIYAGCNTIKVQYSSLPQLEVKQNNERSWDF 242          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig917.4.2 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KZ42_9PHAE3.230e-7075.88RRM domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2XYL8_9STRA2.750e-3954.62Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
D7FN53_ECTSI2.310e-3493.24PTB (HnRNP) homolog family member (Ptb-1) n=1 Tax=... [more]
A0A7S3UWL0_HETAK1.990e-3052.27Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A4D9D0W9_9STRA1.180e-2751.20RRM domain-containing protein n=1 Tax=Nannochlorop... [more]
A0A7J6SYV6_PEROL5.730e-2240.00Uncharacterized protein n=2 Tax=Perkinsus TaxID=28... [more]
A0A7J6LFE9_PEROL1.180e-2140.00Uncharacterized protein n=5 Tax=Perkinsus olseni T... [more]
C5L0S5_PERM52.300e-2144.55Polypyrimidine tract binding protein, putative n=1... [more]
L8HLM4_ACACA5.490e-2146.09HnRNPL/PTB/hephaestus splicing factor subfamily pr... [more]
A0A7J6MLJ2_PERCH1.400e-2042.57Uncharacterized protein n=1 Tax=Perkinsus chesapea... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021790PTBP1, RNA recognition motif 2-likePFAMPF11835RRM_8coord: 53..130
e-value: 1.4E-7
score: 31.7
IPR012677Nucleotide-binding alpha-beta plait domain superfamilyGENE3D3.30.70.330coord: 54..154
e-value: 5.4E-25
score: 89.5
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..49
NoneNo IPR availablePANTHERPTHR23189:SF79HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN L2coord: 47..148
NoneNo IPR availablePANTHERPTHR23189RNA RECOGNITION MOTIF-CONTAININGcoord: 47..148
IPR035979RNA-binding domain superfamilySUPERFAMILY54928RNA-binding domain, RBDcoord: 50..145

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig917contigC-tenellus_contig917:14661..15775 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig917.4.2mRNA_C-tenellus_contig917.4.2Choristocarpus tenellus KU2346mRNAC-tenellus_contig917 14559..15775 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig917.4.2 ID=prot_C-tenellus_contig917.4.2|Name=mRNA_C-tenellus_contig917.4.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=170bp
MNPNKRPPPSSGGTFEGNGLRETASHPKRVRDDVPGGGGQSAGKILRPGQ
EQPGNVLLVRITDIVHPVTILALQQIFSRFGKVDKIVMFDKGSGCQALVQ
MADVYQAMSAHEAADMQEMYSGCNLIRVGYSNLQNVTVKANSERAWNFNV
GPPLEGAAAPGINGIPAPTT
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021790PTBP1_RRM
IPR012677Nucleotide-bd_a/b_plait_sf
IPR035979RBD_domain_sf