mRNA_C-tenellus_contig781.9.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig781.9.2
Unique NamemRNA_C-tenellus_contig781.9.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A6H5KG47_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KG47_9PHAE)

HSP 1 Score: 276 bits (705), Expect = 7.390e-80
Identity = 152/268 (56.72%), Postives = 187/268 (69.78%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREFTGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPPNARGAKMGGADVPAGFAQGGAPLSVPLPPQXXXXXXVHQPPNAYPGYFDAGSSGGSAPPETHSQADDDLPPPY 804
            DTDK FPV GFGGKLGP  P NH FAVN  + APEV  M GV+Q YY SLRRVQLSGPT+FQ++INQAA +A ++++ +  G+KY VLCI+TDGIINDMDAT+  IV+A+  PLSIVIVGVG  +FT+M+HLDGDRQRL SP +G  A+RDMVQFVPFR+F G  ++AQHALAKHVLAEIPGQF+SYM++  I P  +  +  G+ V  G   G A +  P+PPQ               GY   G+ GG+A         +DLPP Y
Sbjct:  387 DTDKKFPVIGFGGKLGPDLPANHAFAVNFQEDAPEVEGMAGVLQAYYQSLRRVQLSGPTLFQAIINQAAQIANSTKHRNSVGQKYHVLCIMTDGIINDMDATVSAIVDAADAPLSIVIVGVGQGDFTAMDHLDGDRQRLTSPFTGKVASRDMVQFVPFRDFNGFGSAAQHALAKHVLAEIPGQFISYMQSNGIDPANK--RPPGSIVTGGGGVGPA-MVPPMPPQAA-------------GY---GAGGGAA---------NDLPPAY 626          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A7S4DAY2_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DAY2_HETAK)

HSP 1 Score: 206 bits (525), Expect = 5.490e-57
Identity = 109/204 (53.43%), Postives = 146/204 (71.57%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPE---VALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF-TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPPNARGA 600
            D+DKLFPVYGFG KL PGQP NHCFA N  D+AP+      + GV+Q YY ++ RV +SGPT+FQ +I+QAA +AR++ +      KY+VL I+TDGIINDM  TI  +V AS LPLS+++VGVGDA+F +M  LD D++RL S  + + AARD+VQFV   ++ T +  + +H LAK +LAEIPGQFL YM++K + P   GA
Sbjct:  139 DSDKLFPVYGFGAKLAPGQPANHCFAANFDDRAPDHHPAPGIAGVLQTYYAAVARVVMSGPTLFQQIISQAAALARSTASQG----KYYVLLILTDGIINDMQKTIDTLVAASELPLSVLMVGVGDADFENMHILDADQERLKSTGAKL-AARDIVQFVEISKYQTNSRLADKHQLAKELLAEIPGQFLDYMKSKNMSPQQLGA 337          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A835ZIA4_9STRA (Copine-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZIA4_9STRA)

HSP 1 Score: 205 bits (522), Expect = 3.210e-54
Identity = 114/210 (54.29%), Postives = 141/210 (67.14%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREFTGTSTSAQHALAKHV------------LAEIPGQFLSYMETKKIPPNAR 594
            D DK FPV GFGGK    QPV HCFAVNG++  PE   + G++Q+YYDSLR V+L GPT+F  +I QAA VA + + DD    KY VL I+TDG I DM  T+  IV AS LPLSI+IVGVG+A+F SME LDGD   LVS SSGVRA RD+VQFVP R+    ++  +HA+AK V            LAEIP Q ++YM+++ IPP  R
Sbjct:  324 DADKAFPVMGFGGKPHHSQPVQHCFAVNGNEAQPEAMGVQGILQMYYDSLRTVELFGPTLFAPIIGQAAGVASSLQTDDPSHHKYSVLLILTDGQICDMQNTVDAIVGASHLPLSIIIVGVGNADFKSMEVLDGDDAALVS-SSGVRAQRDIVQFVPMRQ---VASRGEHAIAKEVSQKDQSLTRMCVLAEIPDQVVAYMKSQNIPPGPR 529          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A6H5LMQ8_9PHAE (C2 domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LMQ8_9PHAE)

HSP 1 Score: 202 bits (514), Expect = 1.550e-52
Identity = 130/292 (44.52%), Postives = 169/292 (57.88%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREFTGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPPN---------ARGAKMGGADVPAGFAQGGAPLSVPLPPQXXXXXXVHQPPNAYPGY------FDAGSSGG---------SAPPETHSQADDDLPPPY 804
            D D+ FPV+GFGG      P +HCFAVNG++  PEV  + GV+ +Y  SL RVQLSGPT+F  VI+QAA +A ++ + D   + Y +L +ITDG+I DM+ T+  IV A+  P S+VIVGVGDA++TSME LDGD  RLV+  +G RA RD+VQFVP R+F G S+   HALAK VLAEIP Q + YM+   IPP           +G+ MG   +   F   GA   VP  PQ       HQ P+A P +      ++    G          +AP E   Q   D PP Y
Sbjct:  371 DDDRRFPVFGFGGCPVYRAPASHCFAVNGNENDPEVEGIAGVLDLYRQSLTRVQLSGPTLFAPVISQAASLAASTMSKDPSQQYYTILLLITDGVICDMENTVEAIVAAADYPFSMVIVGVGDADYTSMEQLDGDDVRLVN-RAGQRAGRDIVQFVPMRDFAGKSS---HALAKEVLAEIPAQVIEYMKNNHIPPGNPHRPSLAGCQGS-MGSMALKESFMHNGA-APVPGMPQGGSFTN-HQAPSAAPSFRGQPQQYNQSQQGSFMHPQAGAPTAPYEPPQQTGGDAPPVY 655          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A7S2UZU9_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2UZU9_9STRA)

HSP 1 Score: 189 bits (480), Expect = 3.130e-52
Identity = 104/203 (51.23%), Postives = 137/203 (67.49%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDG---VIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVR----AARDMVQFVPFREFTGTSTSAQHA-LAKHVLAEIPGQFLSYMETKKIPP 585
            D+DKLFP YGFGG+   GQP  HCFA+N ++QAP+V  + G   V+Q Y+ SL+ VQL GPT+F  VI +A ++A+ +  +    +KY+VL IITDG+ NDM  TI  IV+AS+LPLSI+IVGVG A+F++M  LD D  RL +P  GV     A+RD+VQFV    F    T A  A LA+ +LAEIP QFL YM++   PP
Sbjct:    4 DSDKLFPAYGFGGRPAQGQPTAHCFAINRNEQAPQVHPVQGISGVLQSYFSSLQWVQLHGPTLFHPVIQRAHVLAQQAAMEG--SQKYYVLLIITDGMNNDMQQTIDAIVKASALPLSILIVGVGQADFSNMHVLDADNGRLSTPGDGVNGPMTASRDIVQFVEIAPFLSKGTGAYEAPLARELLAEIPAQFLGYMKSIGKPP 204          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: UPI0015ADC75B (copine-8-like isoform X4 n=1 Tax=Anguilla anguilla TaxID=7936 RepID=UPI0015ADC75B)

HSP 1 Score: 193 bits (490), Expect = 6.560e-51
Identity = 108/198 (54.55%), Postives = 132/198 (66.67%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF---TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPP 585
            DTDK+FP  GFG KL P   V+H FA+NG+ Q P  A +DGV++ YY SL+ VQL GPT F  VIN  A  A + E+    G +YF+L IITDG+I+DM  T   IV A+ LP+SI+IVGVG AEF +M  LDGD  R+ S   G RA RD+VQFVPFR++   TG S  +   LAK VLAEIP QFLSYM T+   P
Sbjct:  241 DTDKMFPALGFGAKLPPDGRVSHEFALNGNPQNPYCAGIDGVMEAYYQSLKSVQLYGPTNFSPVINHVARYAASVED----GTQYFILLIITDGVISDMAQTKEAIVNAACLPMSIIIVGVGPAEFDAMVELDGDEVRITS--RGRRAERDIVQFVPFRDYVDRTGNSVLSMARLAKDVLAEIPDQFLSYMRTRGFKP 432          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: UPI001C350BCD ((large yellow croaker) hypothetical protein n=1 Tax=Larimichthys crocea TaxID=215358 RepID=UPI001C350BCD)

HSP 1 Score: 188 bits (478), Expect = 8.930e-51
Identity = 107/199 (53.77%), Postives = 132/199 (66.33%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF---TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPPN 588
            D+DK+FP  GFG KL P   V+H FA+NG+ Q P  A +DGV++ YY SL+ VQL GPT F  VIN  A  A + ++    G +YFVL IITDG+I+DM  T   IV AS LP+SI+IVGVG AEF +M  LDGD  R+   S G  A RD+VQFVPFR++   TG    +   LAK VLAEIP QFLSYM T+ I P+
Sbjct:   98 DSDKMFPALGFGAKLPPDGRVSHEFALNGNPQNPYCAGIDGVMEAYYQSLKSVQLYGPTNFSPVINHVARYAASVKD----GSQYFVLLIITDGVISDMAQTKESIVNASCLPMSIIIVGVGPAEFDAMVELDGDEVRI--SSRGRYAERDIVQFVPFRDYIDRTGNHILSMARLAKDVLAEIPDQFLSYMRTRGIKPS 290          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: G3UD31_LOXAF (Copine domain-containing protein n=2 Tax=Eutheria TaxID=9347 RepID=G3UD31_LOXAF)

HSP 1 Score: 186 bits (472), Expect = 9.930e-51
Identity = 104/198 (52.53%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF---TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPP 585
            D+DKLFP YGFG KL P   ++H F +N +D+ P  A ++GV++ Y+ SLR VQL GPT F  VINQ A  A    +    G +Y+VL IITDG+I+DM  T   IV ASSLP+SI+IVGVG A F +ME LDGD  R+   S G  A RD+VQFVPFR++   +G    +   LAK VLAEIP Q LSYM T+ I P
Sbjct:   35 DSDKLFPAYGFGAKLPPEGRISHQFPLNNNDEDPNCAGIEGVLESYFQSLRTVQLYGPTYFAPVINQVARAAAKISD----GSQYYVLLIITDGVISDMTQTKEAIVSASSLPMSIIIVGVGPAMFEAMEELDGDDVRV--SSRGRYAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQLLSYMRTRDIQP 226          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: A0A8J0T353_XENTR (copine-9 isoform X1 n=1 Tax=Xenopus tropicalis TaxID=8364 RepID=A0A8J0T353_XENTR)

HSP 1 Score: 189 bits (481), Expect = 1.050e-50
Identity = 106/198 (53.54%), Postives = 132/198 (66.67%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF---TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPP 585
            D+DKLFP YGFG K+ P   ++H FA+NG  + P    + GV++ Y+ SLR VQL GPT F SVINQ A  A     D   G +Y+VL IITDG+I+DM  T   IV ASSLP+SI+IVGVG AEF +ME LDGD  R+   S G  A RD+VQFVPFR++   +G    +   LAK VLAEIP QFLSYM+++ I P
Sbjct:  142 DSDKLFPAYGFGAKIPPDGKISHEFALNGDIENPNCVGIQGVLEAYFKSLRTVQLYGPTNFASVINQVARAA----GDVTDGSQYYVLLIITDGVISDMVQTKEAIVNASSLPMSIIIVGVGPAEFDAMEELDGDEVRV--SSRGRFAERDIVQFVPFRDYVDRSGNQVLSMARLAKDVLAEIPEQFLSYMKSRDIKP 333          
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Match: UPI001ABDA239 (copine-9-like n=1 Tax=Bufo bufo TaxID=8384 RepID=UPI001ABDA239)

HSP 1 Score: 184 bits (466), Expect = 4.940e-50
Identity = 102/198 (51.52%), Postives = 130/198 (65.66%), Query Frame = 1
Query:    1 DTDKLFPVYGFGGKLGPGQPVNHCFAVNGHDQAPEVALMDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVLCIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQRLVSPSSGVRAARDMVQFVPFREF---TGTSTSAQHALAKHVLAEIPGQFLSYMETKKIPP 585
            D+DK FP YGFG K+ P   ++H F +NG  + P    + GV++ Y+ SLR VQL GPT F  VINQ A  A    +    G +Y+VL IITDG+I+DM  T   +V ASSLPLSI+IVGVG AEF +ME LDGD  R+   S G  A RD+VQFVPFR++   +G    +   LAK VLAEIP QFLSYM++++I P
Sbjct:   24 DSDKFFPAYGFGAKIPPDGKISHEFPLNGDLENPNCVGIQGVLEAYFKSLRTVQLYGPTNFAPVINQVASAAGQVTD----GSQYYVLLIITDGVISDMAQTKEAVVNASSLPLSIIIVGVGPAEFDAMEELDGDEVRV--SSRGRLAERDIVQFVPFRDYVDRSGNQILSMARLAKDVLAEIPEQFLSYMKSREIKP 215          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig781.9.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KG47_9PHAE7.390e-8056.72Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S4DAY2_HETAK5.490e-5753.43Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A835ZIA4_9STRA3.210e-5454.29Copine-domain-containing protein n=1 Tax=Tribonema... [more]
A0A6H5LMQ8_9PHAE1.550e-5244.52C2 domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A7S2UZU9_9STRA3.130e-5251.23Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
UPI0015ADC75B6.560e-5154.55copine-8-like isoform X4 n=1 Tax=Anguilla anguilla... [more]
UPI001C350BCD8.930e-5153.77(large yellow croaker) hypothetical protein n=1 Ta... [more]
G3UD31_LOXAF9.930e-5152.53Copine domain-containing protein n=2 Tax=Eutheria ... [more]
A0A8J0T353_XENTR1.050e-5053.54copine-9 isoform X1 n=1 Tax=Xenopus tropicalis Tax... [more]
UPI001ABDA2394.940e-5051.52copine-9-like n=1 Tax=Bufo bufo TaxID=8384 RepID=U... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig781contigC-tenellus_contig781:12147..16588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FKI8
PFAMsC2,Copine,Dev_Cell_Death
Model size2068
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
GOsGO:0001101,GO:0003674,GO:0005488,GO:0005543,GO:0005544,GO:0005575,GO:0005623,GO:0005886,GO:0005911,GO:0008150,GO:0008289,GO:0008361,GO:0009266,GO:0009270,GO:0009415,GO:0009506,GO:0009628,GO:0009987,GO:0010035,GO:0010118,GO:0010941,GO:0016020,GO:0016043,GO:0030054,GO:0032535,GO:0042221,GO:0043167,GO:0043168,GO:0044464,GO:0045793,GO:0048519,GO:0048523,GO:0050789,GO:0050794,GO:0050896,GO:0055044,GO:0060548,GO:0065007,GO:0065008,GO:0071840,GO:0071944,GO:0090066,GO:0090332,GO:1901700
Exons4
Evalue5.22e-66
EggNOG OGsKOG1327@1|root,KOG1327@2759|Eukaryota
Descriptionnegative regulation of response to water deprivation
Cds size699
COG categoryU
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig781.9.2prot_C-tenellus_contig781.9.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig781 13402..16474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.0548308-UTR-C-tenellus_contig781:12146..134011680790062.0548308-UTR-C-tenellus_contig781:12146..13401Choristocarpus tenellus KU2346UTRC-tenellus_contig781 12147..13401 -
1680790062.1168046-UTR-C-tenellus_contig781:16474..165881680790062.1168046-UTR-C-tenellus_contig781:16474..16588Choristocarpus tenellus KU2346UTRC-tenellus_contig781 16475..16588 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790062.0704288-CDS-C-tenellus_contig781:13401..139171680790062.0704288-CDS-C-tenellus_contig781:13401..13917Choristocarpus tenellus KU2346CDSC-tenellus_contig781 13402..13917 -
1680790062.0795343-CDS-C-tenellus_contig781:14276..143331680790062.0795343-CDS-C-tenellus_contig781:14276..14333Choristocarpus tenellus KU2346CDSC-tenellus_contig781 14277..14333 -
1680790062.089047-CDS-C-tenellus_contig781:15744..158521680790062.089047-CDS-C-tenellus_contig781:15744..15852Choristocarpus tenellus KU2346CDSC-tenellus_contig781 15745..15852 -
1680790062.1018474-CDS-C-tenellus_contig781:16456..164741680790062.1018474-CDS-C-tenellus_contig781:16456..16474Choristocarpus tenellus KU2346CDSC-tenellus_contig781 16457..16474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig781.9.2

>prot_C-tenellus_contig781.9.2 ID=prot_C-tenellus_contig781.9.2|Name=mRNA_C-tenellus_contig781.9.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=233bp
MDGVIQVYYDSLRRVQLSGPTIFQSVINQAAIVARNSENDDLPGKKYFVL
CIITDGIINDMDATIHGIVEASSLPLSIVIVGVGDAEFTSMEHLDGDRQR
LVSPSSGVRAARDMVQFVPFREFTGTSTSAQHALAKHVLAEIPGQFLSYM
ETKKIPPNARGAKMGGADVPAGFAQGGAPLSVPLPPQQQQQPPVHQPPNA
YPGYFDAGSSGGSAPPETHSQADDDLPPPYRP*
back to top

mRNA from alignment at C-tenellus_contig781:12147..16588-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig781.9.2 ID=mRNA_C-tenellus_contig781.9.2|Name=mRNA_C-tenellus_contig781.9.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4442bp|location=Sequence derived from alignment at C-tenellus_contig781:12147..16588- (Choristocarpus tenellus KU2346)
GACACAGACAAGCTGTTTCCTGTATATGGTTTTGGGGGCAAACTTGGTCC TGGTCAACCTGTTAATCATTGCTTTGCTGTGAATGGGCATGATCAAGCCC CTGAGGTGGCGCTTATGGATGGAGTTATTCAGGTGAGGCAAATGATACTG TGGTTGGGGGAGGTGTTGAGGGAGTTCTGTCTTGTATGATAGGTTCAACA CTCCTGCTTCTGTGTATTTTTTGCATGTGTCGATTAGGTCTGGTGATATA TGATACTGTAATATTGTGAAGTAGAAGGTATTTGAAGGTGAAGGGCGACT CTACTGTGTATCGCAGCTACTTTTATGTTCTTGTGAGGAACTTGCTCATA GTTTGAGCTAACATGGTACTCTTGACTATTATGTGAGTCATATTATGTGA GTCATTTGAAGCCTGTCTTGTGCGGGTTGGTTATTGAAGAAACACACCCG GTGGTGTTTGAAAGTTGAAAATCGTTGCTGTAGTGTCTTTTGTAGCCTAA AATGTAAGTCATACAAATGACCCCCCCCCCCCCTTCCCAAGAAATGCAAG ACCTAATGTTATGTCAAGCATCAGTCAGTGATGCCACTTCAACCACTCTT GTCATCATATTTGTGCGTGCCTTGTCTTTGCACAGTTCTCCTGCTGCTGG TTGCCGCCGACGCCTTCCTAGAATGTCTCATTCTAAAGGTTTTGTACCTC ACTTGTGCTGCTTATGTCTTGTGGACCTGTCCCTAGGTGTACTATGACAG CTTGAGGAGAGTGCAGCTTTCCGGGCCTACAATATTCCAATCTGTGATCA ATCAAGCAGCAATTGTGGCAAGAAACTCAGAAAATGATGATTTGGTCAGT GATTTATTTAACCCCTTTGCCCCTTGGTTATGTTGTAGCTGTGCTTGTTG TGGTACAAGATCTATTCATACTGTATGGAATTAATTTATCTGCTGTTAAG AAACTATAGGAGTGCATGTGATGTTTGGTGTGAGTAGGTGGTAGTTTGGG CTTAGGAATTCTGCACATTGAATTGCGGGTGTTTGTTAGCCCTTGTGTGA CTGAAGTCATTGGGAAGTATGGTCAGGATGGCTGAAGAGTGTGACATTTG ACATGCTGGGAGTTGGTTGAAGTAGCTGGGATGGGGTGTGTGTGCTACAG CCATTTTGAGTTCAAGGGTTTTTAGCTTTTTGTTTCAAATATGAAGTAGT TTGAAAGAGTGCATCGATAAGGATAGCTTCTTTCCGCACTTGATCATACT CACAAAGCAGCACCAAACAAAATGCACTCTACAGTAGTGGACTTTGTAGT TAAAAACGTGTGCCACCAGAAAGTTGGAGGGGTCCTTAGAACTCAGCGGC ACCCCTCCCCTCTTTGCTATTTTGACTCTGGGGTGTGTGCGTTGATTCGT ATTACTTGTTGGTTTGTGTATGTTTAAGGTGCTTGTTTTTATTTTTGGTG AAGGAATGCATTTTTACCTTCTTTCTGGAGATTGGTGCCCACTGTGCAAG TGTGATAGATGTGTGCCTTGACACCACTACCATAGTTTGCCGTACCTCTT ATCATCTTCATTTTATGAAGAAAAAATATGGTCTTGTCTTCTTCTACCAT TGCACAAGTTTCATGATGTTTTTGTGGATGTGAGGGGGAGAGGTGAGGAG AATATAGGCGTTTTAGTCGGAATCATTTGAAGAAAACAGGCATTTCAACT GTGAGTACTCTCTCAAGGTTCTCAGTGCATCGCTGGAGGTATTTGTGAGG GGTAATATTAATGTATATATATGTATGTATATTTTACGTTTTTTGTTTTA TTTTATTTTTGAAAATAACAATAATTTGCGTACACAACTACTGTTGTAAC GGCTTCATTCCGTGCAAGTGTGATGTAAGTAGGATTGCTTATTGTGGCAT GTCACAGAAATGAGAGAGTATCATCAGAGTCGATAAACTCAATAGTACTA ACGCTACAATGAAGTGCTTCAAAGACATCTGAATCCTCCTGCTTGGAACT CGAACCCTAACCCCACACATACAATAGGAATAGTAATAACATACTTTGAT ATTTAACATTAACTTAGCCAGGCCGCGAGAACAGTAGTTCTACCTCCACC CACACCACACCACACCACACCCTTCAGTATTATTGTAGCTGTGTACCTAT TTGCCTGCTTCACTATTGACTACCAACTCACACCTGACAATGCCTTCCTG TTGATATAACGTGTTGGTTTGTCCATTCATCTGTCTGCTTGTTGCTTATG GGCAGCCTGGGAAGAAGTACTTCGTGCTGTGCATTATCACAGATGGAATC ATCAATGACATGGTAAGGACTCACTTGTGACAACACTGACAAGTAGGGAT AGTTCTGGCAGTGATATATAGGTGGACTTAAGCCAAGAGTATTATTTTGG ATGTTGTGAATAGAACATATGTTTGCCTTGTGTGCACCTTGCCGATTCTG ACATAAATCAGTAAAAAATTTCGATACCACCCACCTGTATATGCCCAGCC AATCATGCCTGCTCTGCATTGCCTTATCCTCTGCCTTGGATTCACGAGCC AAAGTTCAGTCCCCCCCCCCCCTCCCCCCCCAGAAACAGCCTCAACTTCA TGCATTCATGATCCTTAGCACATCCCCTGCCTGCCTCCCCCTTTCCGCGC CTCAATCTCCACACTGAAAAGGATGCCACAATTCATGGTATTGTGGAGGC CTCGTCTCTCCCCCTTAGTATTGTAATTGTGGGAGTGGGGGATGCAGAAT TTACATCCATGGAACACCTCGATGGTGACCGACAACGCCTGGTTTCCCCT TCATCGGGTGTGAGAGCAGCACGGGATATGGTACAGTTTGTACCCTTCCG GGAATTCACAGGTACAAGTACAAGTGCACAGCATGCCCTTGCGAAACATG TGCTCGCGGAGATACCGGGTCAATTCCTTAGCTACATGGAGACCAAAAAA ATACCACCAAACGCAAGGGGAGCCAAAATGGGAGGGGCTGACGTACCTGC TGGGTTTGCTCAGGGGGGAGCACCGTTGTCGGTGCCGCTGCCGCCACAAC AGCAGCAACAGCCTCCAGTGCACCAGCCTCCAAATGCATATCCAGGGTAC TTCGATGCGGGCAGCAGTGGTGGTAGTGCACCACCAGAAACACATTCTCA GGCTGATGATGATCTGCCCCCACCATACAGACCTTGATGTTTGTGATGAT GTGGAGGATGGGATATGTTCTGAAGGGAGGTGAGATCTGAAATTGTCTTG GCCATATTGGGGGGATTGTGGGAGATAGTTGTGATATAATCAGAGATGGG TTTGTTCTTGTTTTGTTGTTGAGGGGAAGAATCTAATCCGATCACAACGG ACTCCAAATAAATGATATCATATCTTGTTTCACTAGGCCTCATTTTTCAG AGTCATCTTGTTATCTGGTGTGTTCCGCTTGTGAAGCAGGAACCCTTACA AGATCTCAATTGGTTAAGGCATGCATGCTCGAAGAGGAGCAGCACCCCCC AAATACATTTTTTCTTTTTGAAGATACCACTTCACCTCTGGTGCTCTGTA AGAGGTCATATCTGTATTTGATGATTGATTTGGATTACTCTTCGTGTGTC ATAGATAGTTCAGTTTAGTTGGGATTTCTGCTTTTTGTGCAGCATAGTGC ACATCCAAGCTATTTGTGGAGGTCTGCTGGCCTATGATGGTATTGTTGTG TCCTAGTCAGAAAGGTGTAAGGGAGAAAATGTAAAATGTTTTGTGCCAGC ATTTCTAGTGCAATGGGAGAGGAGTCGCAGATATTTAGTGAATAATTACT TTAAGATGTATTTTTTGAGGCACGATGTAGAGAGGTAGATTTCCTCTTCC TGATCCAGCATAGCAGCATATATATTTGAGTGCTCGTGATCAGTACTGTT TTGCAACTGTGATGTTTGTACCTAGCAAGAGGCACCATCTGTGATGGGCA CCCGATAATTTCATTTTGCTATGCACTTGAACAATGCATGAGAGCCTGTA GCAACGGAATTGCATGCATCCCTTGGATTTTCTCTGTTGTTGATGGGGGA GGTAGATTAGTAGAGAAATAGTAGCAATTCTCTTTGCTCCATTGGTCCCA GCAAGAAGACTAGTTACGAGGTGATCCAGCATGTGATTTAGTAAGTTTTT ATCGGTTCTATGGAAAACATAAGTCTTTTCTTGATGATACAGAATGGAAT GGGATACATACATCCTCACTTATCTTTCTTTATATAGTACATGGTGTACT CTTCATTTTAAATTCTACTGTTGATGATGATCACTCAATATGATGCTGTG TTTAAATTGTGTAATGGGAAGACAAGAAGACAAGGAAGGACCTGGTGAAT AAAAAAAAATAAATAAATAAAAAATGCATGCGTAATTTGTCGGCATTTGT TTTGCCCTAGGACATTTCAGCATGGAATAAGATGGTTTCACT
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig781:12147..16588-

>mRNA_C-tenellus_contig781.9.2 ID=mRNA_C-tenellus_contig781.9.2|Name=mRNA_C-tenellus_contig781.9.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=699bp|location=Sequence derived from alignment at C-tenellus_contig781:12147..16588- (Choristocarpus tenellus KU2346)
ATGGATGGAGTTATTCAGGTGTACTATGACAGCTTGAGGAGAGTGCAGCT
TTCCGGGCCTACAATATTCCAATCTGTGATCAATCAAGCAGCAATTGTGG
CAAGAAACTCAGAAAATGATGATTTGCCTGGGAAGAAGTACTTCGTGCTG
TGCATTATCACAGATGGAATCATCAATGACATGGATGCCACAATTCATGG
TATTGTGGAGGCCTCGTCTCTCCCCCTTAGTATTGTAATTGTGGGAGTGG
GGGATGCAGAATTTACATCCATGGAACACCTCGATGGTGACCGACAACGC
CTGGTTTCCCCTTCATCGGGTGTGAGAGCAGCACGGGATATGGTACAGTT
TGTACCCTTCCGGGAATTCACAGGTACAAGTACAAGTGCACAGCATGCCC
TTGCGAAACATGTGCTCGCGGAGATACCGGGTCAATTCCTTAGCTACATG
GAGACCAAAAAAATACCACCAAACGCAAGGGGAGCCAAAATGGGAGGGGC
TGACGTACCTGCTGGGTTTGCTCAGGGGGGAGCACCGTTGTCGGTGCCGC
TGCCGCCACAACAGCAGCAACAGCCTCCAGTGCACCAGCCTCCAAATGCA
TATCCAGGGTACTTCGATGCGGGCAGCAGTGGTGGTAGTGCACCACCAGA
AACACATTCTCAGGCTGATGATGATCTGCCCCCACCATACAGACCTTGA
back to top