mRNA_C-tenellus_contig7771.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7771.2.1
Unique NamemRNA_C-tenellus_contig7771.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7771.2.1 vs. uniprot
Match: D8LJ92_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ92_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 7.750e-21
Identity = 47/70 (67.14%), Postives = 57/70 (81.43%), Query Frame = 1 
Query:    1 KRFLTSEAATRRRLATALSARTIKITPDILSGLLFLLLFLFVLVTGLGCLGDIECPQSFATVQPAAGKEY 210
            +R L +E+   RRLAT    RTIKITPDIL+GLL LLLFLF+LVTGLGC+GDIECP+SF++  PA G+EY
Sbjct:  228 RRSLKAESRAHRRLATESLTRTIKITPDILAGLLTLLLFLFILVTGLGCVGDIECPKSFSSEDPAKGREY 297
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BLAST of mRNA_C-tenellus_contig7771.2.1 vs. uniprot
Match: A0A7S2WS17_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WS17_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 6.390e-7
Identity = 27/59 (45.76%), Postives = 41/59 (69.49%), Query Frame = 1 
Query:   34 RRLATALSARTIKITPDILSGLLFLLLFLFVLVTGLGCLGDIECPQSFATVQPAAGKEY 210
            RRL++A S + +++TPDIL+GLL  +L   + +TGL CLG I+ P  F+ V P + +EY
Sbjct:  210 RRLSSASSTQGVRMTPDILAGLLTGILLTVIALTGLCCLGSIQTPTKFSDVPPPSTREY 268
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7771.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJ92_ECTSI7.750e-2167.14Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2WS17_9STRA6.390e-745.76Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7771contigC-tenellus_contig7771:6282..6494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog67593.Physo138019
Model size213
Max annot lvl4776|Peronosporales
Hectar predicted targeting categorysignal anchor
Exons1
Evalue8.92e-05
EggNOG OGs2BGC2@1|root,2S193@2759|Eukaryota,3QCZN@4776|Peronosporales
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-02_005230.1
Cds size213
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790057.5313609-CDS-C-tenellus_contig7771:6281..64941680790057.5313609-CDS-C-tenellus_contig7771:6281..6494Choristocarpus tenellus KU2346CDSC-tenellus_contig7771 6282..6494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7771.2.1prot_C-tenellus_contig7771.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7771 6282..6494 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7771.2.1

>prot_C-tenellus_contig7771.2.1 ID=prot_C-tenellus_contig7771.2.1|Name=mRNA_C-tenellus_contig7771.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=71bp
KRFLTSEAATRRRLATALSARTIKITPDILSGLLFLLLFLFVLVTGLGCL
GDIECPQSFATVQPAAGKEY*
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mRNA from alignment at C-tenellus_contig7771:6282..6494-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7771.2.1 ID=mRNA_C-tenellus_contig7771.2.1|Name=mRNA_C-tenellus_contig7771.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=213bp|location=Sequence derived from alignment at C-tenellus_contig7771:6282..6494- (Choristocarpus tenellus KU2346)
AAAAGGTTCTTGACCTCCGAGGCCGCCACCCGCCGCCGCCTAGCAACAGC
CCTCTCTGCTCGTACCATCAAGATCACTCCGGACATCCTGTCTGGTTTGC
TGTTTTTGCTTCTCTTCCTGTTTGTGCTGGTGACCGGACTGGGGTGTCTG
GGGGACATCGAGTGCCCTCAGTCCTTTGCAACTGTGCAGCCTGCGGCGGG
GAAGGAATACTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig7771:6282..6494-

>mRNA_C-tenellus_contig7771.2.1 ID=mRNA_C-tenellus_contig7771.2.1|Name=mRNA_C-tenellus_contig7771.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=213bp|location=Sequence derived from alignment at C-tenellus_contig7771:6282..6494- (Choristocarpus tenellus KU2346)
AAAAGGTTCTTGACCTCCGAGGCCGCCACCCGCCGCCGCCTAGCAACAGC
CCTCTCTGCTCGTACCATCAAGATCACTCCGGACATCCTGTCTGGTTTGC
TGTTTTTGCTTCTCTTCCTGTTTGTGCTGGTGACCGGACTGGGGTGTCTG
GGGGACATCGAGTGCCCTCAGTCCTTTGCAACTGTGCAGCCTGCGGCGGG
GAAGGAATACTAG
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