mRNA_C-tenellus_contig7662.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7662.1.1
Unique NamemRNA_C-tenellus_contig7662.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A6H5K608_9PHAE (Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K608_9PHAE)

HSP 1 Score: 120 bits (302), Expect = 7.790e-30
Identity = 59/97 (60.82%), Postives = 72/97 (74.23%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADPRLSPLGASALLEEWFVATA----GEGSWESDKDVLCWI 279
            QVAVQFADLHDTPGRM A+G +R+ VPW+ESR +F+WRLRRRLAEFDLR QV    ADP + PL AS LL++W+++ A        WE DK VL W+
Sbjct: 2125 QVAVQFADLHDTPGRMEARGAVRKVVPWTESRSFFFWRLRRRLAEFDLRRQVS--RADPSVDPLAASGLLKDWYLSDAEVNGARPCWEEDKAVLAWM 2219          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: W7T6R6_9STRA (Acetyl-carboxylase alpha n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T6R6_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.040e-28
Identity = 60/102 (58.82%), Postives = 75/102 (73.53%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADPR-------LSPLGASALLEEWFVATAGEGS--WESDKDVLCWI 279
            QVAVQFADLHDTPGRM A GVIR+ VPW ++R +FYWRLRRRLAEF LR +V L+  D +       ++ L ASALL+ WFVAT G+ +  WE D++VL W+
Sbjct:  120 QVAVQFADLHDTPGRMEAVGVIRKVVPWGQARSFFYWRLRRRLAEFHLRKEV-LKAVDGKEGGKEGGMTLLQASALLKSWFVATPGKSTEGWEEDREVLGWM 220          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A7S1H3I2_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1H3I2_9STRA)

HSP 1 Score: 108 bits (270), Expect = 2.170e-27
Identity = 57/101 (56.44%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLR------AQVGLQEADPRLSPLGASALLEEWFVATAG--EGSWESDKDVLCWI 279
            Q+AVQF +LHDTPGRM A GV+ R V WSESR YFYWRLRR+LAEFDLR      A+VG     P +  L ASAL++EWF+ T G  +  W  DK +L W+
Sbjct:   62 QIAVQFCELHDTPGRMKAVGVVERVVEWSESRAYFYWRLRRKLAEFDLRKKIVEAAEVGRGVKAPTV--LEASALIKEWFIETPGMTDDQWSDDKVILAWM 160          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A4D9CUA8_9STRA (CoA carboxyltransferase C-terminal domain-containing protein (Fragment) n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CUA8_9STRA)

HSP 1 Score: 112 bits (280), Expect = 2.630e-27
Identity = 60/102 (58.82%), Postives = 74/102 (72.55%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADPR-------LSPLGASALLEEWFVATAGEG--SWESDKDVLCWI 279
            QVAVQFADLHDTPGRM A GVIR+ VPW ++R +FYWRLRRRLAEF LR +V L+  D +       ++ L ASALL+ WFVAT G+    WE D++VL W+
Sbjct:  292 QVAVQFADLHDTPGRMEAVGVIRKAVPWGQARSFFYWRLRRRLAEFHLRKEV-LKAGDGKEGGKEGGMTLLQASALLKSWFVATPGKSIEGWEEDREVLGWM 392          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A0B4L7U5_9STRA (Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochloropsis oculata TaxID=43925 RepID=A0A0B4L7U5_9STRA)

HSP 1 Score: 110 bits (274), Expect = 4.700e-26
Identity = 57/100 (57.00%), Postives = 73/100 (73.00%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQV-----GLQEADPRLSPLGASALLEEWFVATAGEGS--WESDKDVLCWI 279
            QVAVQFADLHDTPGRM A GVIR+ VPW+++R +FYWRLRRRLAEF LR +V     G    +  +S L AS LL+ W+V+T G+ +  WE D++VL W+
Sbjct: 2203 QVAVQFADLHDTPGRMAAVGVIRQVVPWAQARSFFYWRLRRRLAEFHLRKEVFKAAGGKGGREGGMSLLQASVLLKSWYVSTPGKTAEGWEEDREVLGWM 2302          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A7S2A3W1_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A3W1_TRICV)

HSP 1 Score: 108 bits (270), Expect = 1.550e-25
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQV----GLQEADPRLSPLGASALLEEWFVATAG--EGSWESDKDVLCWI 279
            Q++VQF +LHDTPGRM A GVI REV W  +R +F+WRLRR+LAEFDLR ++     +  A  +LSPL ASAL++ WFV T G  E  W+ DK +L W+
Sbjct:  535 QISVQFCELHDTPGRMRATGVIEREVEWKNARTFFFWRLRRKLAEFDLRKKMIEAGEIGRATKKLSPLEASALMKSWFVETPGMTEALWDDDKAMLQWM 633          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A7S2A4C3_TRICV (Acetyl-CoA carboxylase n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2A4C3_TRICV)

HSP 1 Score: 108 bits (270), Expect = 1.630e-25
Identity = 54/99 (54.55%), Postives = 70/99 (70.71%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQV----GLQEADPRLSPLGASALLEEWFVATAG--EGSWESDKDVLCWI 279
            Q++VQF +LHDTPGRM A GVI REV W  +R +F+WRLRR+LAEFDLR ++     +  A  +LSPL ASAL++ WFV T G  E  W+ DK +L W+
Sbjct: 1948 QISVQFCELHDTPGRMRATGVIEREVEWKNARTFFFWRLRRKLAEFDLRKKMIEAGEIGRATKKLSPLEASALMKSWFVETPGMTEALWDDDKAMLQWM 2046          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A835YMY6_9STRA (Acetyl-CoA carboxylase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YMY6_9STRA)

HSP 1 Score: 108 bits (269), Expect = 2.230e-25
Identity = 58/100 (58.00%), Postives = 69/100 (69.00%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADPRLSPLG----ASALLEEWF---VATAGEGSWESDKDVLCWI 279
            Q+AVQFADLHDTPGRM A G +R+ VPW+E+R +FYWRLRRRLAEFDL  Q  LQ+A    SP      A ALL+ WF   V + G+  WE DK VL W+
Sbjct: 2127 QLAVQFADLHDTPGRMAATGAVRKVVPWAEARSFFYWRLRRRLAEFDLCRQ--LQQASKGKSPAEGIDQARALLKGWFASMVNSTGQQQWEDDKTVLAWM 2224          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A7S2I8N6_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2I8N6_9STRA)

HSP 1 Score: 105 bits (262), Expect = 3.060e-25
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADP------RLSPLGASALLEEWFVATAG--EGSWESDKDVLCWI 279
            Q+AVQF +LHDTPGRM A GVI + V W  +R +F+WRLRR+LAEFD R ++  QEA         L+ +GASA+++EWF+ T G  E  W+ DK VL W+
Sbjct:  179 QIAVQFCELHDTPGRMKAVGVIEKSVEWKNARTFFFWRLRRKLAEFDFRKKI--QEASTIGRGIQTLTAIGASAMMKEWFIGTPGMSESMWDDDKAVLSWM 277          
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Match: A0A7S2MZF0_9STRA (Acetyl-CoA carboxylase n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MZF0_9STRA)

HSP 1 Score: 105 bits (262), Expect = 1.960e-24
Identity = 52/101 (51.49%), Postives = 69/101 (68.32%), Query Frame = 1
Query:    1 QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRAQVGLQEADP------RLSPLGASALLEEWFVATAG--EGSWESDKDVLCWI 279
            Q+AVQF +LHDTPGRM A GVI + V W  +R +F+WRLRR+LAEFD R ++  QEA         L+ +GASA+++EWF+ T G  E  W+ DK VL W+
Sbjct: 2203 QIAVQFCELHDTPGRMKAVGVIEKSVEWKNARTFFFWRLRRKLAEFDFRKKI--QEASTIGRGIQTLTAIGASAMMKEWFIGTPGMSESMWDDDKAVLSWM 2301          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7662.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K608_9PHAE7.790e-3060.82Acetyl-CoA carboxylase n=1 Tax=Ectocarpus sp. CCAP... [more]
W7T6R6_9STRA2.040e-2858.82Acetyl-carboxylase alpha n=1 Tax=Nannochloropsis g... [more]
A0A7S1H3I2_9STRA2.170e-2756.44Hypothetical protein n=1 Tax=Thalassionema nitzsch... [more]
A0A4D9CUA8_9STRA2.630e-2758.82CoA carboxyltransferase C-terminal domain-containi... [more]
A0A0B4L7U5_9STRA4.700e-2657.00Acetyl-CoA carboxylase (Fragment) n=1 Tax=Nannochl... [more]
A0A7S2A3W1_TRICV1.550e-2554.55Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S2A4C3_TRICV1.630e-2554.55Acetyl-CoA carboxylase n=1 Tax=Trieres chinensis T... [more]
A0A835YMY6_9STRA2.230e-2558.00Acetyl-CoA carboxylase n=1 Tax=Tribonema minus Tax... [more]
A0A7S2I8N6_9STRA3.060e-2551.49Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
A0A7S2MZF0_9STRA1.960e-2451.49Acetyl-CoA carboxylase n=1 Tax=Helicotheca tamesis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7662contigC-tenellus_contig7662:41..1142 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0R0D3
PFAMsCarboxyl_trans
Model size279
Max annot lvl2836|Bacillariophyta
KEGG rclassRC00040,RC00253,RC00367
KEGG koko:K11262
KEGG ReactionR00742,R04385,R04386
KEGG Pathwayko00061,ko00254,ko00620,ko00640,ko01100,ko01110,ko01212,ko04152,ko04910,ko04922,map00061,map00254,map00620,map00640,map01100,map01110,map01212,map04152,map04910,map04922
KEGG ModuleM00082
Hectar predicted targeting categoryother localisation
Exons2
Evalue1.05e-24
EggNOG OGsCOG0439@1|root,KOG0368@2759|Eukaryota,2XAV2@2836|Bacillariophyta
EC2.1.3.15,6.3.4.14,6.4.1.2
Descriptionacetyl-CoA carboxylase
Cds size279
COG categoryI
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790050.6231394-CDS-C-tenellus_contig7662:40..1991680790050.6231394-CDS-C-tenellus_contig7662:40..199Choristocarpus tenellus KU2346CDSC-tenellus_contig7662 41..199 +
1680790050.6371005-CDS-C-tenellus_contig7662:1022..11421680790050.6371005-CDS-C-tenellus_contig7662:1022..1142Choristocarpus tenellus KU2346CDSC-tenellus_contig7662 1023..1142 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7662.1.1prot_C-tenellus_contig7662.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7662 41..1142 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7662.1.1

>prot_C-tenellus_contig7662.1.1 ID=prot_C-tenellus_contig7662.1.1|Name=mRNA_C-tenellus_contig7662.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=93bp
QVAVQFADLHDTPGRMVAKGVIRREVPWSESRVYFYWRLRRRLAEFDLRA
QVGLQEADPRLSPLGASALLEEWFVATAGEGSWESDKDVLCWI
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mRNA from alignment at C-tenellus_contig7662:41..1142+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7662.1.1 ID=mRNA_C-tenellus_contig7662.1.1|Name=mRNA_C-tenellus_contig7662.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1102bp|location=Sequence derived from alignment at C-tenellus_contig7662:41..1142+ (Choristocarpus tenellus KU2346)
CAGGTTGCTGTTCAGTTTGCTGACCTTCATGACACCCCTGGAAGGATGGT TGCCAAGGGGGTGATAAGAAGGGAGGTACCTTGGTCGGAGTCAAGGGTGT ACTTCTACTGGCGACTACGGAGGAGACTGGCAGAGTTTGATCTGCGTGCT CAGGTGGGAGTGATGTATATCCCCCCCCCCCCCCCCCCCCCCCCGGGGGT TGTTTTTTTTTTGTTATATTTTTTTTTTTTTTTTTTTAATTTATTTTNNN NNNNNNNCCCCCACCCCCCTTCCTTTGGCCTCCCCCCCCCCCCCCCCCCC CGCAGGTGTTGTATGTTTGTAGTAGTAACTATTTTTTGTTTCTCTAACAA CATTGCCTGAGTTTTGATTCTGTTGTTGAGTACAAATCGTTCTGTATTTG TAGCGTATGCTGTGTCTTGTGTAATGTTTTATTTTATTTTATTTTATTTT TTCCCTGGTGAGAAGAGGTGTGTGTGCGTGTGCATGCTGGAAGCGAGTTG AGTTCAATCCTGTCTTGTGTAGGGGTGTGATTAAGATGGATCGTTGTGTC TTTTTTGTTAATTAAGGCGACCAAGAAAATGTGTGTAAATCTATATTATT TATTTTTTGGTAAAACAAAAATAAGGCGTAACATTTTCATGTTGTCTCCT CTCCTGCCTCACACTTTGAAAATTATGTAGTTATCTTGCTTAGAATTTCG TATTCATGTTCAGCAGACACGTATACATACATACATACACATGAACGACT GACTCCCTTATGATGTCGTTGTTGTGACTACTTTTGTTTATTACCTCATT TTCTCTTCTCATATTTTTATATTGCTTGTGCTAGAATAGAATCATTAGAA TCGCACATCCATCCAAAAAGGAATATTAATTGAAGAATAATAATTCCCAT GCATGATGATGACGACAATAATAATAATATGAACAAAAAAAAATTAATAT ATTTGTATCTATCAAAAATGAAAACAAAATAGTTGCAAGAGGCAGACCCA AGGCTAAGTCCCCTTGGCGCCAGTGCATTGCTGGAGGAGTGGTTTGTTGC AACAGCTGGTGAAGGGAGCTGGGAGAGTGACAAGGATGTCCTCTGCTGGA TA
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Coding sequence (CDS) from alignment at C-tenellus_contig7662:41..1142+

>mRNA_C-tenellus_contig7662.1.1 ID=mRNA_C-tenellus_contig7662.1.1|Name=mRNA_C-tenellus_contig7662.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=279bp|location=Sequence derived from alignment at C-tenellus_contig7662:41..1142+ (Choristocarpus tenellus KU2346)
CAGGTTGCTGTTCAGTTTGCTGACCTTCATGACACCCCTGGAAGGATGGT
TGCCAAGGGGGTGATAAGAAGGGAGGTACCTTGGTCGGAGTCAAGGGTGT
ACTTCTACTGGCGACTACGGAGGAGACTGGCAGAGTTTGATCTGCGTGCT
CAGGTGGGATTGCAAGAGGCAGACCCAAGGCTAAGTCCCCTTGGCGCCAG
TGCATTGCTGGAGGAGTGGTTTGTTGCAACAGCTGGTGAAGGGAGCTGGG
AGAGTGACAAGGATGTCCTCTGCTGGATA
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