mRNA_C-tenellus_contig763.1.3 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig763.1.3
Unique NamemRNA_C-tenellus_contig763.1.3
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig763.1.3 vs. uniprot
Match: D8LFP8_ECTSI (Similar to peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFP8_ECTSI)

HSP 1 Score: 217 bits (552), Expect = 2.460e-61
Identity = 113/202 (55.94%), Postives = 146/202 (72.28%), Query Frame = 2
Query:    5 RLAARVERHLPCNRPSTVREFGAMMDKVVGNILASPTDPKFRELRALNKTVLRSIINCHGGREMLHLLGFERISKYGEPVYFLSDPQVDHLTEARVWLAQRVEGCLSMATQRSAPTGGGNDSCADCVITVKLTSGRVLEGGFFAHETIKNVYEFLHASVVNSSEDLRLCHGSPPQ-QLGEDMLGVTLKETNFMPTATLEVVK 607
            RL  RV RHLPCN    V +F  +  KVV NIL++P D KFRELRA NKT+ R++++CHGGRE L LLGFE+I+K GE VYFL++P VDHLT+A+ WLA+RV+ C     ++S  + GG  +CAD V+TV LTSG+ LEGGF+ HETI +VY FL +SVVN  EDLRL   + P+ +LGE ML ++L +   +P ATL VVK
Sbjct:   12 RLVNRVGRHLPCNTIQVVSDFAKVATKVVENILSNPADVKFRELRANNKTIQRAVLSCHGGREFLSLLGFEKITKNGEVVYFLAEPHVDHLTQAKGWLAERVKSC-----EQSEGSVGGR-ACADSVLTVLLTSGQTLEGGFYKHETIHDVYAFLQSSVVNGGEDLRLRTTTVPETELGEQMLPMSLADAKLLPRATLAVVK 207          
BLAST of mRNA_C-tenellus_contig763.1.3 vs. uniprot
Match: A0A835ZG04_9STRA (UBX domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG04_9STRA)

HSP 1 Score: 195 bits (496), Expect = 9.840e-53
Identity = 106/261 (40.61%), Postives = 160/261 (61.30%), Query Frame = 2
Query:    5 RLAARVERHLPCNRPSTVREFGAMMDKVVGNILASPTDPKFRELRALNKTVLRSIINCHGGREMLHLLGFERISKYGEPVYFLSDPQVDHLTEARVWLAQRVEGCLSMATQRSAPTGGGNDSCADCVITVKLTSGRVLEGGFFAHETIKNVYEFLHASVVNSSEDLRLCHGSPPQQLGEDMLGVTLKETNFMPTATLEVVKTK-----SLQALGKAVPGAVDEATKAAEDLNMLMRHRDTTRREKEKEKAKLVAEFLADHE 772
            RL  RV RH+PCN P  VR F     K++ NI+ +P +PK+RELRA N  V   ++  HGG+E LHLLGFE+I K+GE VYF+++  +++LT+A+ WL Q+    ++MA         G  +CA+CVI V+LTSG+ LEGGF+AHET++ VY+F+ +SVVN+ E L L           D L +TL++    P A L+VVK+      + +A+ +A   A  +  +A E L M+   +   +  ++ EKA++++EF  D E
Sbjct:   12 RLLVRVGRHIPCNAPEAVRVFLDAASKMLDNIMKAPEEPKYRELRAANAAVSAKLLQPHGGKEFLHLLGFEKIFKHGEAVYFMTEVDLEYLTQAKQWLQQQAAAAMAMAPAEVP----GAQACAECVIQVRLTSGQTLEGGFYAHETVRAVYDFVRSSVVNAEEAL-LLRAPGHHSFTADKLDMTLQDAGLAPRAVLQVVKSGPEEGGAAEAMEEARRRARQQEREAHEQLRMIKETKMKEQVARDAEKARILSEFKHDRE 267          
BLAST of mRNA_C-tenellus_contig763.1.3 vs. uniprot
Match: A0A7S3TPZ0_9SPIT (Hypothetical protein (Fragment) n=1 Tax=Strombidinopsis acuminata TaxID=141414 RepID=A0A7S3TPZ0_9SPIT)

HSP 1 Score: 56.6 bits (135), Expect = 1.100e-5
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 2
Query:   71 AMMDKVVGNILASPTDPKFRELRALNKTVLRSIINCHGGREMLHLLGFE 217
            A + K++ N+L+SPT+PK+R L+A NK V   I++C GGR++L   GFE
Sbjct:   57 ATIIKIIANVLSSPTEPKYRALKAENKAVKEKILSCPGGRQLLLAAGFE 105          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig763.1.3 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LFP8_ECTSI2.460e-6155.94Similar to peptide-N(4)-(N-acetyl-beta-glucosaminy... [more]
A0A835ZG04_9STRA9.840e-5340.61UBX domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S3TPZ0_9SPIT1.100e-548.98Hypothetical protein (Fragment) n=1 Tax=Strombidin... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig763contigC-tenellus_contig763:88..14587 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog135651.CBN01497
Preferred nameUBXN6
PFAMsPUB,UBX
Model size2562
Max annot lvl33208|Metazoa
KEGG koko:K14011
KEGG Pathwayko04141,map04141
Hectar predicted targeting categoryother localisation
GOsGO:0000323,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005769,GO:0005770,GO:0005773,GO:0005774,GO:0005829,GO:0005938,GO:0006508,GO:0006807,GO:0006810,GO:0006914,GO:0006950,GO:0007034,GO:0007041,GO:0008150,GO:0008152,GO:0008333,GO:0009056,GO:0009057,GO:0009966,GO:0009967,GO:0009987,GO:0010008,GO:0010033,GO:0010243,GO:0010498,GO:0010646,GO:0010647,GO:0012505,GO:0016020,GO:0016192,GO:0016197,GO:0016236,GO:0019538,GO:0019898,GO:0023051,GO:0023056,GO:0030111,GO:0030163,GO:0030177,GO:0031090,GO:0031410,GO:0031901,GO:0031902,GO:0031982,GO:0032509,GO:0032510,GO:0032991,GO:0033554,GO:0034976,GO:0036503,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044437,GO:0044440,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045177,GO:0045179,GO:0046907,GO:0048518,GO:0048522,GO:0048583,GO:0048584,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0051716,GO:0060828,GO:0061919,GO:0065007,GO:0071704,GO:0071944,GO:0071985,GO:0090263,GO:0097708,GO:0098588,GO:0098805,GO:0098852,GO:0099568,GO:0099738,GO:1901564,GO:1901565,GO:1901575,GO:1901698
Exons10
Evalue1.64e-07
EggNOG OGsKOG2699@1|root,KOG2699@2759|Eukaryota,38BYE@33154|Opisthokonta,3BEM1@33208|Metazoa,3CTAX@33213|Bilateria,40D6S@6231|Nematoda,1KVVI@119089|Chromadorea,40UIS@6236|Rhabditida
Ec32 ortholog descriptionUBX domain
Ec32 orthologEc-01_001370.1
Descriptionendosome to lysosome transport via multivesicular body sorting pathway
Cds size897
COG categoryO
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig763.1.3prot_C-tenellus_contig763.1.3Choristocarpus tenellus KU2346polypeptideC-tenellus_contig763 1783..14586 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790048.4667835-UTR-C-tenellus_contig763:87..9261680790048.4667835-UTR-C-tenellus_contig763:87..926Choristocarpus tenellus KU2346UTRC-tenellus_contig763 88..926 -
1680790048.4829822-UTR-C-tenellus_contig763:957..17821680790048.4829822-UTR-C-tenellus_contig763:957..1782Choristocarpus tenellus KU2346UTRC-tenellus_contig763 958..1782 -
1680790048.5978346-UTR-C-tenellus_contig763:14586..145871680790048.5978346-UTR-C-tenellus_contig763:14586..14587Choristocarpus tenellus KU2346UTRC-tenellus_contig763 14587..14587 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790048.4918108-CDS-C-tenellus_contig763:1782..19441680790048.4918108-CDS-C-tenellus_contig763:1782..1944Choristocarpus tenellus KU2346CDSC-tenellus_contig763 1783..1944 -
1680790048.5036201-CDS-C-tenellus_contig763:2678..27561680790048.5036201-CDS-C-tenellus_contig763:2678..2756Choristocarpus tenellus KU2346CDSC-tenellus_contig763 2679..2756 -
1680790048.5124228-CDS-C-tenellus_contig763:10031..101171680790048.5124228-CDS-C-tenellus_contig763:10031..10117Choristocarpus tenellus KU2346CDSC-tenellus_contig763 10032..10117 -
1680790048.523292-CDS-C-tenellus_contig763:10775..108551680790048.523292-CDS-C-tenellus_contig763:10775..10855Choristocarpus tenellus KU2346CDSC-tenellus_contig763 10776..10855 -
1680790048.5342863-CDS-C-tenellus_contig763:11469..115111680790048.5342863-CDS-C-tenellus_contig763:11469..11511Choristocarpus tenellus KU2346CDSC-tenellus_contig763 11470..11511 -
1680790048.545572-CDS-C-tenellus_contig763:12496..125551680790048.545572-CDS-C-tenellus_contig763:12496..12555Choristocarpus tenellus KU2346CDSC-tenellus_contig763 12497..12555 -
1680790048.5594065-CDS-C-tenellus_contig763:13512..136841680790048.5594065-CDS-C-tenellus_contig763:13512..13684Choristocarpus tenellus KU2346CDSC-tenellus_contig763 13513..13684 -
1680790048.5717647-CDS-C-tenellus_contig763:14008..141421680790048.5717647-CDS-C-tenellus_contig763:14008..14142Choristocarpus tenellus KU2346CDSC-tenellus_contig763 14009..14142 -
1680790048.582147-CDS-C-tenellus_contig763:14502..145861680790048.582147-CDS-C-tenellus_contig763:14502..14586Choristocarpus tenellus KU2346CDSC-tenellus_contig763 14503..14586 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig763.1.3

>prot_C-tenellus_contig763.1.3 ID=prot_C-tenellus_contig763.1.3|Name=mRNA_C-tenellus_contig763.1.3|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=299bp
MRLAARVERHLPCNRPSTVREFGAMMDKVVGNILASPTDPKFRELRALNK
TVLRSIINCHGGREMLHLLGFERISKYGEPVYFLSDPQVDHLTEARVWLA
QRVEGCLSMATQRSAPTGGGNDSCADCVITVKLTSGRVLEGGFFAHETIK
NVYEFLHASVVNSSEDLRLCHGSPPQQLGEDMLGVTLKETNFMPTATLEV
VKTKSLQALGKAVPGAVDEATKAAEDLNMLMRHRDTTRREKEKEKAKLVA
EFLADHEGKVANTHPSRHATRYGVNDDIGGYEGEGSGFFYCLHCKVVH*
back to top

mRNA from alignment at C-tenellus_contig763:88..14587-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig763.1.3 ID=mRNA_C-tenellus_contig763.1.3|Name=mRNA_C-tenellus_contig763.1.3|organism=Choristocarpus tenellus KU2346|type=mRNA|length=14500bp|location=Sequence derived from alignment at C-tenellus_contig763:88..14587- (Choristocarpus tenellus KU2346)
GATGAGACTTGCAGCTCGGGTTGAGCGCCATTTACCTTGCAACCGGCCTA GTACGGTTCGAGAGTTCGGGGCGATGATGGACAAGGTGAATGACCCACTA GTAGAAGCAGATTCGTGGAGGGGTAGCAAAGTTTGTGTAACTCTCTCGAA GATTTGAGAAAGGGGGTGTTAAGCTAAAGGATTCATTCTAAAAGGATTTT GGTGCAGTCAGTGAGGTCGGGTTGATAATATGCAATATTTTCTGTCAGTT AATGCTGGCCTAGCGCTGGAAGGTGACCAAAGTGTCGATCTTTTAGTCAA CTCCCGTTTTGACCCAACATCCTATCTTAACAACTCGAGGTTTGAAATGC ACAACTTATTGGAGACAAAACCTGCTTGTAGACGCGAAACATTTGTAGGC TCGACCTACTGCACCCCACCCCACGTTTGTTTCCCCAAAACATAGGTAGT CGGCAATATTCTCGCTTCACCAACTGACCCCAAATTTCGCGAGCTTCGCG CTCTCAACAAGACTGTACTGCGCAGCATAATAAACTGCCACGGTGGGAGG GAGATGCTCCACCTACTAGGGTTCGAGAGGTGAGACTACGAGCTGTTTTC CTAGAGCTGTATATCTGTGAGCGCTGAGACACACATAGAGGTGACTTGAT AGTAGCAAGGTGGACACAAAACAGGGATATTCCCCACTATCTTTCCCCAC AAAGCATGAAATACTCCTCCATCACACAGGATGGTGCTGACAGGTAGAAG ATGACTCATTTTTTCATTATTGTCCGCGCTAATGTTTAATTAACCGATCC TATCATACCACTAGGCTCAATGTCGGAGGTCCTTGCCTAACACACCCAAC GAATTTACCGCCTCTCAATCCCTAATGGACATACTTGGGTGACTCCGAGT CAGGATCTCCAAGTATGGGGAACCTGTGTACTTTCTTTCTGACCCTCAGG TGGATCACCTCACAGAGGCAAGGGTCTGGCTAGCACAGCGAGTGGAGGGG TGCTTGTCAATGGCAACGCAAAGATCTGCCCCCACTGGGGGAGGAAATGA CTCATGTGCTGATTGTGTCATCACGGTAGGTATCAGCACTGTTCATGCCC GTGCCATGCAACGGAGAACACCTGGTCTCTGTTTCCATATCTTGACCTGA GAACCTTCAATGACTCAGGGGCGGGACATGAGTGTTCATGTGTCAAATAC CTTTTTAGAGACAATATTACAGGAATATCGCATCAAGAAGAGTGGGATTC GATATCATTGCAAAGAGGGCAATATTAGATCTTGTACAGAAGATCATTAT CCACTAGTTGTCTTGTATATTTTTGTCTTTTTTATTGTGTGTTTGAAGCT TGTACACAAAGAGCTCTAACAAAGACTTTTTGTGGATCCTTTCTTTTTGT GCACTGTTGAGCACTAGTCAACAGTTCCTTACGTTATTGAGAGCAATCTG GACGATGCACATTGCATCAGTTGTTTCTGTGGGAAGCAAAGTGAATCTAC CTTCTTTGGTCCCTCAGATCTCTATCATGAATCTGTTGAAAGGGTGCATC TTAGTCTTTGTTCAAGTCCCTTAGTCTTTCGGTCTTGAAATAGAACATGT GCATTCTCATTGTGTAGATAGCCTGAGACCCTGAACAGTAGCACACACAG TATTCTTGCCAATGCACCAAAGTGCCCTCTCCTTGGACTTTGTGAAATTT TGACTTGAACACTGTTGGATAGGAACATATTGGTGGCAGCTCTCAGTGGG AGCTACAATGTTGATGAGACTGGATGGATGAACTGTGCCCTTGAATGCCT CACTACCCCTACCTTTGGTTGTTGCCATCTCCCCCTCCCCACCTGTTACA CAACACACACAACACCCCTACACACATGCACATCTACACAATGGTTTTTT TTTAATGCTCTGTTCTCTGCCTTTCCAACAAATTTTGTTTTAAGCCTATC ATATTGTGCAGCAACTCAGGACACCTGGGTGATGTCATTTCTGGGTCCCT GCCGGCTATGACCACCCTCTTTTTGTTATTAGGTGAAGCTGACAAGTGGG CGGGTCCTAGAGGGAGGGTTCTTTGCCCACGAGACGATCAAGTAAGTCAA ATGCGATCAAGTGGGGATGGAGATGGGGTATGTTAGGATAGAAGCGGGGG TGGCTCTCTATTTTCCTTTGAAGGTCCCTGCCAGATATCCATTATGTGGT CAGTATCTTACAGAGGGACTTGCGAGTTGTTTGCTGGCTATTCGGAGGAT AGGTGCTCTGCGCAATCACAGTAAGGCACTAGAGTGTATACTCATGTACT TGTAGACAAGAGCTGCAGAGTGATATTGATGTGGGGGTTGCGGCTTGGTT CGTCATTGATGGATGTATCGAGTTGTTGAACCAATTGTTGACATGTGACA TGATAACAAGCAGAGCACTCATCATTTCATGAGTGGATGTCTCATCGATG CATATGAACGAACGACCCTTGAGGATTGGCAGCTCGTGTTTGACGTTATG TTATATTTGGAGTCACAGCGCCCACAGCACCCAGGGCAACCATTGTAGAT GAAGCACAGCATGCAAGAAGACGCCCTTGTCAAAAGTTGATGCACTCGTA TCTCGTGTAGAATTATTATTATTATTATTATTATTATTATTATTATTATG TTTGTTAAAGAGATAGTATCAGTACTTCTCCAACACATGCCAACAATCCC TACCTTTTTGCCCTTTTCAACAGCACAAATCACCTTGTCAATTTTAGGAG AACCGGTTCCTGAAGTCTAGGGGTAGAATTGACTTCATTCCTTTGACCAG TGCCCGCCACCCTTCATCATCGCCTATAAACTCCTCGGACAACACACTCT ACAGTGGCAGGTTATGCCAATGCCTCACATATTTCTGATTTCTCGTTGCA CTATTGACACTATGTGCCATTCCCCAGTCCTTGCTCTCGTTGTAGTTAGC ACTCGCTATACATCATGCGATAAGCATAGTAATTGGCAGTCATTTTCCCC TGCGCCCCCCCCCCCCCCCCCCCCCCCCCCTGCACACACTCCACCTCCCT TCCCTCATTCATTTCAATGCATCTAGGAATGTCTACGAGTTCCTTCACGC CAGTGTTGTCAATAGCAGGTGAGATGATGCAGCAACCTTGTGTGTGATCT GGGGGGGCAGGAAATGAAGGTATACTACTCTCCTAGGGCTGAAAAGAGTC GGCAATTTCAGAGTGATTATTTTAGTCTACTTTGGATCAGCACGTTGTGG GTTGTGGAGGAAATAGGAGAGAATAAATCGGTGGAAAGGTGCTAGCTCAC CTTGCTGGGGAAGAGACTGGGTGTTTTGTTAGTTGATCTTATGCCTGCCC ATTTCTCCCGTCAAGTATTGAGGGTTGTGAGATATACTGAGAAGGCTTTT GTGTGTGTGTGTGTGTGTGTGTCCATATACTCAAGGGGAAAACAAGGTCC AACAACTTGCAACTGTAGTATCTCCAAACCTTTGTAACCTCAATTCCAAC CTCAAAATCGAAATTGAGACCTTGTGCACATTGCCTCAACCCCTTCCCCC TTCTCCCAAAATAGCCCAAGGGGTCACCTCCTAATTCCCTAGTAGCTTAA GAGAAGCACAGTCTAAGTTATGATGACATTGGCTCTTAGATCTAACATCT CTCTGTCACTTCCACATTCTAGCCCTGGCTTAACTTATACATTCCAGTCT TGTTCTCCGTTCTTGCCTCCTCCTTCGGCCAGTGAGGACTTGAGACTTTG CCATGGATCACCACCGCAACAGCTGGGTGAAGACATGCTTGGTGTGACAC TCAAAGAAACCAGTTGAGTTCATACTTTGTGCAGTCCCCCTCCTGCCCAC ACGGTCTGCGTTTTCTTTAAACGGCAATATCTTTTGGCCCCGTTCCTGCC CCCAAATAGAATAAAAGTATCAGCGAAGAACACCTTTTTAGATCTTCCAT CAAATTTTCCCAGACATTAGATATTTCTGACTCTACTTAACGTAGTAACC AACTTTCATCAGTCGTTCTGCTGTATTTCATGTATTGATTTCTATTCTTT TCTTTGGCTGGATGGATTTATCAAGTGCCGTTGGCTTGGCGCTCAATTGG CATGAAGCAAGAGCATATTTAAGTTGTACTTCAAAAGTACTCCAGGATAA TTTGCAATATTTAAGTTTTAGGAGACATTCTCCATGGACACATCCATGGT GAATCAAGAAGTCAGATCTATACTTTGAAGTAAAGGTACTCAACGCTGCT GGGGGTCTCATTAGTTGTACCTTAGATCTTTTGAACTACAATGAAACTCC ACCTGATGTTCTGAGTTGGTAATGACAAGGAAGAGTTTCGCAAGCAAGAT CCTAGGTCTCATGATACTCACCAATGCTGATGCAGGCTCCTGCCGTGCAG GCTCTTTGTCTCCACCCTTGGGAAGGAACTTGACTATTAACCTACCCGAC CCATTGGTGCTATTTGTCAGACTTCATGCCAACCGCTACTTTGGAAGTTG TGAAAACAAAGAGTTTGCAAGCATTGGGTAAGGCTGTGCCAGGAGCTGTG GATGAGGTGAGGAGGGTTTTATCCCCACCTTCCCTCCCCCCCGTGTTGGT GCAATGTTAATAGCAATGTGACATTGCTGCATCCAGTAAGTTACATGTAT TAGGAACATGTTTTGGGGGTGAAAGAAGAGTTCTTAAGTGTATACATATT GAAAGCCTCCATCTGTCTATGCAGCGATCAGTTTCTGCAACCCTTCATCT GTACAACAATGCACTCTCTGAATCTATGAAGTGATACAAGAGGGATTTGT AACAGTAGCAAGAGGCTTCAGTACTAGTGTGCATCTTTTCACCTATAGGG ATAGAGAGGGACATATTTGTGTTTATATGTACATCTATAATGCTCTGATA GTGTATCGTTGTAAGGCCATCAATCTGGAAAGGTGAAATGTGGCCGTACA GTGCATCCATTTCGGAGTAGAGCTGTAGTAGTTAGATCTCGGATGCAAGA AAACTGGAACGATCTGAACCTAGGTATAGAACAGGAAAGGCAAAAGGTTA AAGAGAGATACACGGTTAGGACAGAGGGAGGTACTGGCAATGTGCAGGGA CTAAGGAAACCCCACTGAGCCATTGTCCCAGTGGGCTGGGTAGGGCTTCT GTAACAAATCCGATAGTTTCCTTCTTCAGCCCCAGGCCAGCATACACCAA ACCCATCTCAGACCAAAAACTCTAACAACGCTTTTGTTCTTGCTGTCTCA CCGCAGTCTTAAAGAAGATGTGCAGTTCAGATGAAGAAAGACCTGTGCAA GAGTTCATTTGTGTGATCTTCACTTCGGCTGCGGTTTGTATTATATCCCC CTGTCCCGTTTCTTTTTGTTCGCTGTGGTTGCTTGCCCTATCTTGGGTCC TGTCATCTGTCTCGCCCAGACAACAAACAGAAGAAGTAACACGAACAATT CTTCCCGAGAGTACTGCCCAAACCTCTACCTTGAGGCAGAGGCAGTCTAG AATGAACTAAAGTGGTGTGCCAGAGCGCACATATGTAGCAGATGGTGTTT TGTGCACATTTTAGGTATGCTCAGGTACGCCTCGAGTGATACTGGTGCTC CTCTGTGCGGTATACGGGTGCACTGAACAACAATACAGCAGAAGGCCTTG ACCTCTTGTCGTGTAGTACACTATGCCTGCCTACTATGCCTCTATGTATT ATCACCTTTTTTGTAGGTACCACAGGAGACAGGGATCGCTGCCTGGACCT CAAAGTCCAGATATCCGTTTGCCGTATGATGATATCAGATTTCATACTCA ACCTCTGAAAGGACCACCAATTGACATGTGTGGGGTGTTTGCTTTGTTTT TATGCTCGTGTCTTCTTAGATTTTTCCTCACAGATTTGTTCAAAGCATCA GTTCTTCCACTTTTGTACGTACTTCCTCTGTTCGGAATTAAATGTGACAT AAATTTGCAAGCTCTGTTCTCGCCCGGGAATGATCCATGTGATAAACCCT CTGGACGAGGCTTAGTTCTCATATAGATCAGGAGGCACACACAGTTTGAA ATGGCGGACTGTCATGACTGTGGAGGATCGATCACCAGTGGTACAAAGTC AACCAAGTTGCGTTAGACAGGGTTCAAGAACCTCGTGAAAATGTCAAAGT GGGTGTGTATTGGGATACCTAGGATGAAGGCCCCCCGCCGTTTGAGTGGC TTGCTCATCCCGTCGGTCCCAATTGTTTGGCCCAGGAGTCTGGTCCAGAC TCAAACACCCCAACGAAGAACATCTTGATGGCGTGATGCTTGGAGGTGAG AGGGCACAAGACTCAGATGCCTTGGGGGGACTGCAGTGGTCATCATGGAG GACTTCAGAATTTCCTGGAGCACGGTGTTCCGTCATCTGAAGGAGTATGA CAGCCAGATTGCATGGGGTTAATGTATGGGCGTTGTATTATGTTGCAAGG GGCATTGTGGCCACCATACAAGTATCCTCAACATTTAGGATGTCCCATCA GTACACCGCACACCCTTCCGCAAATGGGCGGCCAATGTAGGGGCCTCCCT TGCCCCGTTGTGGGATCTGTGCAAGCATGAGAAGGTGAACAAGGTCCAGC GGTGGATTAAGTCAGTCTCCTCAAACCAACAGAAAGTCACCAGGGTGGGT TTTGTCATCAGTCACATGCACAGGAGGGGGGAGTGGGGTATTGGTATTAG TGGGCGATCTACATGGCGAGGTGCATGTGGACAAGAAGTGGTTTTGAGCC AAAGTATCTTAGAGGGTAGGGCTGCATCCATTTGGGGTCCAAAATCCAAT TTTGCGATTTTGATGCAATTTTGGCTGTCGCGTTTGTTAGGAAGTGTCAA TATCCTTGTTCTGGACACACCTTTTCGTAACGTATATATTTTACCTACTC CAAAACACTTTGGAGTAGGAAAACGTCATAAAAAAAAAAGGGAAGCCAAG CCCCAAATGGACAAGCAGAGCAAAACTCGTACTCTAAGATACTTTTACTC TTTACATCCTCAAAGATGGGCAAGGTGTACCTGCACCCTACCGAGGACCA CCCCAAACCCCCATGTGCACAAAATAAGCATTACGTTACAAAGTTAATGT TCCTTGCAGCTGTGACATGCCCTTGGAAGCTCTCCAACGGGGTGTGGTTT GATGAGAAAATTAGGATCTGGTCACTTGTGGACACTAAGGTCACTCAACA CTCCAGCAAACACCACCCCAAGGGCACCAAGGAGTTTGTGCCAGCCATGG CGGACAGGGAGAAGTATAAGAAGCTTGTGATCGAGGATGTCATCCTGGCA ATCGAGGCCTGCATGCCTAGCCCAGAAGGACACATCATCTCTGTGTAGCA GAACAGGGCAAAGCCGCATAGAAAGGGGAGGATCATGGAGGCAATCAAGG AGTCAATGGGGGACAACATTGTCATAGAGATCCAGCCAGCCAACTCACCT GATCTCAACGCTAACGACCTAGGATTCTTTCATTCAATCCAACAACTGAA GGAAGATGTGGGGATGACAAGCACAGAAGAGGCGGTGGAGGCCACAATGG AGGCTTTTGATGTGTACCCCCTGGAGACGCTAGAGCCCGTCTGGCAGAGA CTCTTCGCAGTCTACAGTGAAGTGCTGGGGTCCAAGGGTGATAATGTCTT CAAAATTCCCTTCTTAGCAAGGAAAAAGCTAAGAAGGTGGGCAAGCTCCC CTAAATACCCTGGTGGATGCGGCAAAATACTGTGCTGGAATGGAGTTTTG GAGGTATCCGGGGGGGGGGATCATAGATAGGTGCAGGCTGCCCTATTTTG ATTGAGATTTTGGTAAGCAACCTTTGAGTGTCTGCACAATACACCCATAA AATATGAACATGTAAAAAAAACTTTAATTTATATTACTTTTAATTCCGAA CGGATGAAGTATATATTTTCAGTCAAATTGTAATGCCCCTTAAGTAACAA GAACATTTTTAGTAGGATTTAGTCCAGAGTAGGATGTGAAGGGTGGAAGG ATTGGGCTCTGTTGTCAACTTTGGTGGTTATATATCCTTTTCTATGGATT GTGTGTGGCTTTGCTTGGGTAGCACCAACTTTGAATCTGAAAAATATTTG CCTGCAGCATGTAAAACTTTTTAGTAGGTGTAGATGACTCTGATATGTAC AAAGGCCTTGCACACTTTGAGTGAATCAGCGTATTCAATATTGGGATAAG GTTACATCTTAAAGGTTTTGGTCAACTGCCACTGAAAAGATTGTCACAAC TAGCGGTTGCTGACACGAGGAAAATGTGGGGTGACCGGACAGTTAAGACG GTGAAAAGGAAACCATTGGAATGAAAATATGCTGAGCCAAAATACTGCCA ATGGTTTCTCTTATAGGCATACTGCCCTGCCAACCAGAATCGATTCAAAT TCACACCGTACCAAGCATTAAACAAATTTATTCTGGAGGCATGCGTGGGA TGTCATGTTTTTGTGTAATTTTTTCTTTGATGGATAATGAATGCTTTCGC TATCACCTTCCTCGTGGCAACACCCGAAGAATGTAAGATGGCATATTAGA TGCTAACTCCGGAGTACATTGTTAATATACTTTCAAGTACATGACTCTCA ACTACTCACCGAACATTAGTATGAGGTACTAAATATGAGTGTTTCTTCTG CATGGCATGGTGTTGTACTATACTCTGAAGCAGTTTGAAGTGCCGCTTTG TCCAAAGATACATTGATAGAAGACAACTACTCCACCAACTACGCCCAACT TGTGCCTGCACTCCTCTGGCCTAGATTCCCTTCTTTTCGTGGCAATACTT GTATCTTGCGGTCAAACTTAGTCACCTCCTTCACGAGGTGCCCATGAGTT GCTGCGCATTCATTACGTCCATGTCTTGTTGAGGTAAGTATCAGGAAGAG GCTGGAGAGGCTTCTCTTCGCTTGGCACCTTTTGTCATCAAGATCATGAC AAACTCTGGCACACATGGCTATGAACGGGGTATTTGTCCTGTTTGTAAGA CCTTGCCTTCCTTACTGGTCTTCACTGTCACCTTCTATCTCCTGTACCTG AGAACGTCAAACTCCTCACTACCTGGTGTGAATGACTCCTCCTCGAGTAG ATACAGAATGAATTCTAAGTCTCCGGGCCTCTGAAAGGTTGACTTTTCCG GGAGAGCCTTGCACATGCCGTGGCGATTGCTGAGATTTCTTTTTAAGCTG TTTCAATCATATCTGATCCAATCAGGACAATGTCTCCCTAGTCAGACCTG GAGATGTCCTCAGTCTATTGTCAGATTCACTGGCACCTGATTTGCCCACA GAACCTCCTCTGTTTTTTTCATCCCAAGTGCATCAATGAGAAAATTCCTC TGCTGCTCGAGCCTACAGCTCTACCCATCAATCAAGAGCCAACATTAGCG CACGACCCTAGAATGCTTTTTTTGGTGCATGGGTCAAGAATGAGAGCCGC CTGCTCCTCATTGGTCTTGACCATGCAAAGGTTTCTTGCTTTTCATATCC TCCAGGTGAATCTTGGTAATATTTTGTGTAGTCTCCATGAATTTTTGGAC CAGTGCATCTTTAAGAGCAGCATTCCCTTCGCTGCAAGAAGAAGCCTGGA TCAGATGCAATTCCTCACTGAGATGTGATGACTTGAGTCATCAAGCAAAT ATTATTACTCTGAAAACCATCATGCTCACCCTGAATATGAGTGGTGTCAT CTGGGGCTGACCCGAGAAGACTATCTAGTTGATAGAGGATGACCTACGCC TCGCTGCTAAGATATCTTTGGGTTGTTCCTAAGAGTATGTGTTTATTGCT GATAGGAGGACAAGAGGTGACGGAAAACCGAAAATTTGATCCAAACCTGT CAAATATTTATGTCTGCCTCTGTTCCACCGGGGCAAATAGTCATGTCCAT ATCTCAACATTTGACAAAATCTGATACCTCGGCCTCTACCACCTCTGCCA TAACTGCCAATGCTCATTGAAACTCAACGAACTATCTCAAATGTGTGAAC TCTATAGCCTGGGGGTTGTTAGAGTGTTGGCAAGAGGGGCACCCATATAC TGTAGAGTAATTTATTCATCTCGGAAATAAAAAAAAAATGGTATGCTTTG CATAGTATTACATTGAAGTATACTGTAAATGCCATACACTGAATATATTG TACTCCAGAGCACTTAAAAATCTACCTCAGTGTTGCTTAGCGGGGTGAAC TGACTTATTTTGACCTGGTCAGAGGTTCTGCCAAAATGTTTCTAGCCAGG CTGGCCATGGGAAAAAAAAATCTGACATGTTCAGTTCAGGGCCATTGACT ATTTCAACGGTACCGGGACTTCCCTATGGTCTGGTGCGATTTTTTGCAAC ATGGCCAGGCTACCCTGCAGCCTAATACAAATATGTAGTCACAGACCTGG TCCAGGGTCATCAGATATTCCTATGATCTGGCCTGCAGTGCCTGCTCGGA TCCCAACCATACTAGCTGCCCAGCCCAGTGGAATGCCCTGACATTTAGGG ATTCGATATTTTTGAATGACCTGCCAAGATTATTGCACGCCCCCACCTCC CCCTCACCATATGCATTCACTCCCATCTTTGTCCGGCTCCAGACGTTTAG AGATGCCTTCCTTAATAACTTTCAAGCCATCCTACCTCTCTGATGCGCTG ATGCGCTGTTCGTAGTATCAATTAGTGCTAACTCCCTTGTGCTTAGATTT ATGATATTGGCAGCAGGTTCCACCCAAGGACCCCGCATCTCTGTCTCGTA GACATTGTCCCCTCACAGCATCTAGATTGTGCTGAGCAGTCGCTGAAAAT GTTGAAAACTCTATGCAGTTTGTCCGTAGGTTTTAGGTGATGGCATGGCA GGACGCAGCTTTCAGCTGCTGAAGGCAGGAACACTCCTACCTACCATTTC CCCCAGATTCAGTGAGACACGGCCAGACATATTTGGCCGTACAATTTTGT ATTCAGTAGACTAAGCTGCAAATGAGCCTTGGAGCCTTCCATGACTGATT GCTTGGCATAGTCCACACATGAAGTGAGAGACTGCGACCAGGAGAACAGG GATGAACACCAACAGTATCCAAAACGGCAACTGCAATGCCCAGAGAATGT CTTCTCTCTGTCCTGTACTGCATCATTATCAGTTTCCTCTGCTTAATCTT GTTTATGGCAAGACGAGATCTGAGGGTTGGGACCGACTTCGTAATTGTAG GAGGGCAAATGTAAAGTATACAGAACTCTTCCTGGCTTAACCCTTGTGTA GCACTAGAGAGGTAGTGAGAAAGAAGTGAAGGACTTACTTGCATACCTCT TTGAAAAGGAAAAGAACATAATGGGTACTACGTGAGGTGACTGACAATAC GCGGCAACAAACCTTAACATTGTCGCATGTTCTATTTGGAACTGGTGTTG TATTTAGGGTTAGGGTTAGGGTTATGGCAGGGTTTGCGTATAGGACTAAG TATTTGTTGCTGTTCACCGCCAGACACCTGAGTAGGACTTGAACCCAATA ACTTCAAAAAGATGCACCACAATAATTTTATATTCCATGACTGATTGCTT GACATAATCTGAATGAAGTGGCAACTGCAACCAGGAGGGTAGGGATGAAC ACCAACAGCATCCAAAACAACAAAGTGTGATATCCAGAGGATGCCTTCCC TCTGTCCTATCTTGCATCCTTTCTTGTTCCCTTTGCCCCATCATGTTTCA ACTTAAACGTACTGTGTCCCTGGAGAGTCTGATGGCACCCTTGGCTGCTC TTTGATCTGGATTACTTCAGTTGTGCTCTCTTTAACCCTGTGGTGCTTTT TTTGGGGGGGGGTAATGGCATTTGTAAGCAGGCGACCAAGGCAGCAGAGG ACTTGAACATGCTTATGAGGCACCGTGATACAACCAGGAGAGAAAAAGAA AAGGAAAAGGTAACATGTTTTTTTTCGGTGTTTGTATGAATTGGGACAGG GGTCCATGAGGTGGGGTGGGGCAATTTGGAACGGATGTGGAATTAAGTTG AGTCGGAATCATGTAGAGGAGAAAATAAGTGTTGGAAGGGCACTGAAGAG ATATGCTATGCCCATGTTTGTGATCATCAGAAACTGTCTTCTGCAATTGA TTGTGGGCTTATTTTGTGTAGTACTTACCCACACACCAAAATTTCCATGG TGCAGGTTAAATTGGTGCGTGAGCATTGTGATGATCCCCACAGTGGGAGG TCCTTACTTGGTTTAGGCAAGGTTATCTGTCCGCCTGACTATATCTGTGT GCGTTCTTAGAATAGGGTTATTGTGTACTTTGTCATCTCTACCAGGCTGT TCATGTATCTACCACTGCAAAGCGCTTACAAGTTGATGTTAAAAAGCTGT GGCGTTCCATCCCCTTGCACCATTTGCAAATCATGGAACACTTATGCTAA AAAAAATGTTTATCGTTGTCACTGTTGCAGTAGTGCCTCTAAAAACGAGG TCTTGAGGTTTTTTGTGGGCATGACAATCTACCACACTTGCTAAAGTGAT CAAATTTCCATAACAAGGCTGCTGGGGAGAGCTAGCAAGCACACCACTGT GTTTTGGCGTACCTAGAAAATCACCTTCCGAGACTGATCATTGTGCCTAC TCACGAATTTCATGCTCTGAATGGTGTCAACATGTTTGCTAAGGCTAAGC TGGTGGCAGAGTTCCTCGCTGATCATGAAGGAAAGGTTGCAAACACCCAT CCCAGTCGCCATGCAACCAGATACGGGGTCAATGATGACATTGGTGGCTA TGAAGGTGAGGGTTCAGGTTTCTTTTACTGCCTGCATTGTAAGGTGGTAC ATTAGTGAACATTCTCAAATTTCCTGCTACTGTCATAACAGACATGAGTG GAGATATGTCTGGTGTAAGATGATTACGTTGATTCCTCTTTCACTGAGCT TGGTAATTCATTCCAAAGGCCATGGCACTGCTGTTGGTGCTTTCTGCATT CTCATATGGAGTTTACCTATTTTTGGCAGAGAAACAGAGCGTGTTTATAG GAAGTGGAATGGCCACCAGCGACCAGTGTCGATTATTTTGCTGCAAGTTC AAAGGCAAGAGCACATATGACGAGCCTCTACTCTGACAATCGCTTAACTC CCAAATTGCTTGCCGTCACTACCTGCACCAATAATGATGTGGGACCATGT CGTTTGTGAAGAAATGAAGGGGAACATGAAGTAAGATGCCAGATGCCAAG GATAGCCCGACACTCGTTACATTTTGGAATGGGGCTAATTCTGTGGGGGG GTGAGCTGGCATATGTGTGTGTGTGTGTGTGTGTGTCATTGTGTCATTGG GTCATTGTGGGACCACCTTTCTTAGTTCTCAGGTACTCTCCCAAGTGAAT TGCATTGTAGTGCACTACTGGGAGTATGGTCACTGATGGGTGTCCCTCAA TGCCAACAGCCATAATATATGGGCCAGTTTTTGTGCCACAAAGTGTGGCT GCTTATTACTCTCTACTGGTGCAAGACATGATTTTCACAACTCTAGGTTC TTGCATATTTCATCCCCACCTGTTAATTTTGCCAACAACATTTTTGTATA GATGTTTTGTGTGATATAGATGTTTGTGTGGCTATTCATTCAGAGGTGGC AGTAACCTTTTGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT GTGTTTCTCAGCAACATGTGTTCATCTTTGAGGTACACCAGGGTGGAGCT ACATGGGTAAAATAATGTGGAAGTGAGAGGGGCAATACTTTTTGTAGAAT CAGCTACTGCTGTGTGTGCTGTTTGGTGTACTGTGTCGTACCATTTGTTG TTGAAGTTGTAATTTTGGTACAAGTACATTGTCCATTGTAACATGACAAC ATTTCCTCTGCTACATAGGACGTAAGACCAAAACAGAGGACAGCAACAAC AGTAGTACAATAATAGTAGGGGGTTTGCTTCTGCTGTTTGTAGATCTGGG GGCAAGTCAATTTTGGCAAGGAAGTAACTGCACAGAGTGGTTCTAGTGGA GTATTGTTGATTGTTGTTGCAAAGCCAAATGTAAGATTTTCTTAGTTGGT TGCCCTTCCCAGCATTTGCAAGGTGCACGCAGAACTTAGCAAAACAGATT AAAATTCCTTCCATATCGTCACCCCTTTTGTCATTACAAGGTTTGTTGGT GGTGGAGCGGAGTGGAGCACCACTCCATGCTATCACCCCTCCTGATGTTT GATTGGTGCTTTCATGGCATTGTAGGGCTGGTCATCATCTATTTCACATC ACTCCTTTCATTTACAAGATCGTTTTTCGTGGCGTAGAGGAGCAAAGTGA ATTGCCTTTACGCCATCCCTCCCTATATTTGTATTGAGCAAGATATTTGA TAGTTTACTCTAGTGGGCTAGAGCATTGTTCATTCCTATCACCCCCCCTA TCATTTGTAAGCTTCTTTAATGTGCATTGTGGTGGAGTACCATCTTACAT TGTCCACTCTATCCATCAGCAGGATGATCAGCTGGGATTTAGAGTGACCC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig763:88..14587-

>mRNA_C-tenellus_contig763.1.3 ID=mRNA_C-tenellus_contig763.1.3|Name=mRNA_C-tenellus_contig763.1.3|organism=Choristocarpus tenellus KU2346|type=CDS|length=897bp|location=Sequence derived from alignment at C-tenellus_contig763:88..14587- (Choristocarpus tenellus KU2346)
ATGAGACTTGCAGCTCGGGTTGAGCGCCATTTACCTTGCAACCGGCCTAG
TACGGTTCGAGAGTTCGGGGCGATGATGGACAAGGTAGTCGGCAATATTC
TCGCTTCACCAACTGACCCCAAATTTCGCGAGCTTCGCGCTCTCAACAAG
ACTGTACTGCGCAGCATAATAAACTGCCACGGTGGGAGGGAGATGCTCCA
CCTACTAGGGTTCGAGAGGATCTCCAAGTATGGGGAACCTGTGTACTTTC
TTTCTGACCCTCAGGTGGATCACCTCACAGAGGCAAGGGTCTGGCTAGCA
CAGCGAGTGGAGGGGTGCTTGTCAATGGCAACGCAAAGATCTGCCCCCAC
TGGGGGAGGAAATGACTCATGTGCTGATTGTGTCATCACGGTGAAGCTGA
CAAGTGGGCGGGTCCTAGAGGGAGGGTTCTTTGCCCACGAGACGATCAAG
AATGTCTACGAGTTCCTTCACGCCAGTGTTGTCAATAGCAGTGAGGACTT
GAGACTTTGCCATGGATCACCACCGCAACAGCTGGGTGAAGACATGCTTG
GTGTGACACTCAAAGAAACCAACTTCATGCCAACCGCTACTTTGGAAGTT
GTGAAAACAAAGAGTTTGCAAGCATTGGGTAAGGCTGTGCCAGGAGCTGT
GGATGAGGCGACCAAGGCAGCAGAGGACTTGAACATGCTTATGAGGCACC
GTGATACAACCAGGAGAGAAAAAGAAAAGGAAAAGGCTAAGCTGGTGGCA
GAGTTCCTCGCTGATCATGAAGGAAAGGTTGCAAACACCCATCCCAGTCG
CCATGCAACCAGATACGGGGTCAATGATGACATTGGTGGCTATGAAGGTG
AGGGTTCAGGTTTCTTTTACTGCCTGCATTGTAAGGTGGTACATTAG
back to top