mRNA_C-tenellus_contig7618.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7618.1.1
Unique NamemRNA_C-tenellus_contig7618.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A2Z7B2V1_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B2V1_9LAMI)

HSP 1 Score: 120 bits (302), Expect = 1.320e-31
Identity = 54/136 (39.71%), Postives = 87/136 (63.97%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG-------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ  G+D+ E F+PV   +T+R ++S+AA   W +  LD   A+LN +L+E+++++ P G       +  +  K++YGLKQS   W+ +  K++  +G+T+ Q D  ++ K SE GR+A+L  Y+DD
Sbjct:   30 KARLVARGFTQTYGIDYQETFAPVAKLNTVRILLSIAANLEWPLHQLDVKNAFLNGELEEEVYMDAPPGFEDQFRGKVCRLRKSLYGLKQSPRAWFEKFSKLVKHQGYTQGQSDHTMFVKWSETGRVAVLIVYVDD 165          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438JR38_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JR38_VITVI)

HSP 1 Score: 124 bits (312), Expect = 3.080e-31
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K++L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:   44 KARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKVVLKLGYKQGQADHTLFVKKSHAGKLAILIVYVDD 180          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438EN06_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EN06_VITVI)

HSP 1 Score: 124 bits (310), Expect = 1.050e-30
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K +L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:  354 KARLVARGFTQSYGIDYHETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKLAILIVYVDD 490          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438JJN6_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438JJN6_VITVI)

HSP 1 Score: 117 bits (294), Expect = 1.540e-30
Identity = 54/137 (39.42%), Postives = 84/137 (61.31%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVA+GFTQ   +D+ E F+PV   +T+R ++S+ A   W +   D   A+LN +L+E++++ LP G        R  K +K++YGLKQS   W+    K+I  +G+ + Q D  ++FK+S DGR+ IL  Y+DD
Sbjct:   30 KARLVAKGFTQTYDIDYTETFAPVAKLNTIRVLLSLTANLDWPLHQFDIKNAFLNGELEEEVFMMLPPGFCKEEEETRVCKLKKSLYGLKQSPRAWFDRFAKVIKNQGYQQGQSDHTMFFKQSNDGRMTILIVYVDD 166          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A803QI12_CANSA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Cannabis sativa TaxID=3483 RepID=A0A803QI12_CANSA)

HSP 1 Score: 123 bits (309), Expect = 2.870e-30
Identity = 59/137 (43.07%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVA+GFTQ  G+D+ E F+PV   +T+R ++S+AA K W +  LD   A+LN DL+E++++++P G        +  K +K++YGLKQS   W+    K I+  G+T+ Q D  L+ K S D RIAIL  Y+DD
Sbjct:  264 KARLVAKGFTQTYGIDYQETFAPVAKLNTVRVLLSLAANKDWPLHQLDVKNAFLNGDLEEEVYMDIPPGFENSSNQNKVCKLKKSLYGLKQSPRAWFGRFTKAIIQNGYTQCQADHTLFVKFSSDKRIAILIVYVDD 400          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438DKE2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438DKE2_VITVI)

HSP 1 Score: 122 bits (307), Expect = 3.150e-30
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K +L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:   93 KARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKMAILIVYVDD 229          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438CTV7_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CTV7_VITVI)

HSP 1 Score: 122 bits (307), Expect = 3.400e-30
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K +L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:   93 KARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEGSMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQTDHTLFVKKSHAGKMAILIVYVDD 229          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438CJB8_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=2 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CJB8_VITVI)

HSP 1 Score: 123 bits (308), Expect = 3.540e-30
Identity = 57/137 (41.61%), Postives = 87/137 (63.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K +L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:  227 KARLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKLAILIVYVDD 363          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A2Z7B226_9LAMI (Cysteine-rich RLK (Receptor-like protein kinase) 8 n=2 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7B226_9LAMI)

HSP 1 Score: 116 bits (290), Expect = 3.560e-30
Identity = 53/136 (38.97%), Postives = 85/136 (62.50%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG-------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K RLVARGFTQ  G+D+ E F+PV   +T+R ++S+AA   W +  LD   A+LN +L+E+++++ P G       +  +  K++YGLKQS   W+ +  K +  +G+T+ Q D  ++ K SE  R+A+L  Y+DD
Sbjct:   30 KARLVARGFTQTYGIDYQETFAPVAKLNTVRILLSIAANLEWPLHQLDVKNAFLNGELEEEVYMDAPPGFEDQCRGKVCRLRKSLYGLKQSPRAWFEKFSKSVKHQGYTQGQSDHTMFVKWSETERVAVLIVYVDD 165          
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Match: A0A438EK50_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438EK50_VITVI)

HSP 1 Score: 123 bits (309), Expect = 4.020e-30
Identity = 57/137 (41.61%), Postives = 88/137 (64.23%), Query Frame = 1
Query:    1 KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFTQAYLNADLQEDIWLELPDG--------RTVKAEKAIYGLKQSAMEWYHELRKIILAEGWTRSQHDECLYFKKSEDGRIAILTTYMDD 387
            K+RLVARGFTQ+ G+D+ E F+PV   +T+R ++S+A  + W +  LD   A+LN DL+E++++E+P G        +  K +K++YGLKQS   W+    K +L  G+ + Q D  L+ KKS  G++AIL  Y+DD
Sbjct:  373 KSRLVARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWCLQQLDIKNAFLNGDLEEEVYMEIPPGFEESMAKNQVCKLQKSLYGLKQSPRAWFDRFTKAVLKLGYKQGQADHTLFVKKSHAGKLAILIVYVDD 509          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7618.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A2Z7B2V1_9LAMI1.320e-3139.71Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
A0A438JR38_VITVI3.080e-3141.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A438EN06_VITVI1.050e-3041.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A438JJN6_VITVI1.540e-3039.42Retrovirus-related Pol polyprotein from transposon... [more]
A0A803QI12_CANSA2.870e-3043.07Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438DKE2_VITVI3.150e-3041.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CTV7_VITVI3.400e-3041.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A438CJB8_VITVI3.540e-3041.61Retrovirus-related Pol polyprotein from transposon... [more]
A0A2Z7B226_9LAMI3.560e-3038.97Cysteine-rich RLK (Receptor-like protein kinase) 8... [more]
A0A438EK50_VITVI4.020e-3041.61Retrovirus-related Pol polyprotein from transposon... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7618contigC-tenellus_contig7618:1705..2100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog981085.XP_010113352.1
Preferred nameTRRAP
PFAMsFAT,FATC,PI3_PI4_kinase
Model size396
Max annot lvl35493|Streptophyta
KEGG koko:K08874
KEGG Pathwayko05166,map05166
Hectar predicted targeting categoryother localisation
Exons1
Evalue6.11e-30
EggNOG OGsCOG2801@1|root,COG5032@1|root,KOG0017@2759|Eukaryota,KOG0889@2759|Eukaryota,37KZ4@33090|Viridiplantae,3GEXY@35493|Streptophyta,4JJF8@91835|fabids
DescriptionBelongs to the PI3 PI4-kinase family
Cds size396
COG categoryBDLT
BRITEko00000,ko00001,ko01001,ko03021,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790047.7311754-CDS-C-tenellus_contig7618:1704..21001680790047.7311754-CDS-C-tenellus_contig7618:1704..2100Choristocarpus tenellus KU2346CDSC-tenellus_contig7618 1705..2100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7618.1.1prot_C-tenellus_contig7618.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7618 1705..2100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7618.1.1

>prot_C-tenellus_contig7618.1.1 ID=prot_C-tenellus_contig7618.1.1|Name=mRNA_C-tenellus_contig7618.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=132bp
KTRLVARGFTQNAGVDFFEPFSPVVGYDTLRYVISVAAYKGWSIDDLDFT
QAYLNADLQEDIWLELPDGRTVKAEKAIYGLKQSAMEWYHELRKIILAEG
WTRSQHDECLYFKKSEDGRIAILTTYMDDTAT
back to top

mRNA from alignment at C-tenellus_contig7618:1705..2100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7618.1.1 ID=mRNA_C-tenellus_contig7618.1.1|Name=mRNA_C-tenellus_contig7618.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=396bp|location=Sequence derived from alignment at C-tenellus_contig7618:1705..2100+ (Choristocarpus tenellus KU2346)
AAGACAAGACTCGTGGCACGTGGGTTTACCCAAAATGCAGGAGTAGATTT CTTTGAACCCTTCAGCCCGGTAGTGGGATACGACACACTACGATATGTCA TATCAGTTGCAGCGTACAAAGGATGGAGCATAGACGACCTGGATTTCACA CAGGCCTACCTCAACGCAGATCTGCAGGAGGACATCTGGTTGGAGCTTCC TGATGGCCGCACTGTCAAGGCAGAGAAGGCAATCTATGGGCTGAAGCAGT CGGCAATGGAATGGTACCATGAACTGCGCAAAATTATATTAGCGGAAGGG TGGACGAGGAGTCAACACGACGAGTGCCTCTACTTCAAGAAGAGTGAAGA TGGACGCATCGCCATCCTCACTACCTACATGGACGACACTGCCACC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7618:1705..2100+

>mRNA_C-tenellus_contig7618.1.1 ID=mRNA_C-tenellus_contig7618.1.1|Name=mRNA_C-tenellus_contig7618.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=396bp|location=Sequence derived from alignment at C-tenellus_contig7618:1705..2100+ (Choristocarpus tenellus KU2346)
AAGACAAGACTCGTGGCACGTGGGTTTACCCAAAATGCAGGAGTAGATTT
CTTTGAACCCTTCAGCCCGGTAGTGGGATACGACACACTACGATATGTCA
TATCAGTTGCAGCGTACAAAGGATGGAGCATAGACGACCTGGATTTCACA
CAGGCCTACCTCAACGCAGATCTGCAGGAGGACATCTGGTTGGAGCTTCC
TGATGGCCGCACTGTCAAGGCAGAGAAGGCAATCTATGGGCTGAAGCAGT
CGGCAATGGAATGGTACCATGAACTGCGCAAAATTATATTAGCGGAAGGG
TGGACGAGGAGTCAACACGACGAGTGCCTCTACTTCAAGAAGAGTGAAGA
TGGACGCATCGCCATCCTCACTACCTACATGGACGACACTGCCACC
back to top