mRNA_C-tenellus_contig7599.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7599.1.1
Unique NamemRNA_C-tenellus_contig7599.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A225VYH6_9STRA (RNA-directed DNA polymerase n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225VYH6_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.830e-10
Identity = 36/105 (34.29%), Postives = 61/105 (58.10%), Query Frame = 1
Query:  148 ALETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPKS 462
            A+E  L+ A     P     +L+ ++    +++R+  G DPPAKV+P+++ LKEG   +K++PR   P   ++M EF + LV LG +   P   W++P LP+ K+
Sbjct:  354 AIEKMLRAALEQGFPRRLESKLRAIVFKH-DVWRLTLGDDPPAKVDPLEIRLKEGAKSIKSKPRQYPPAVRTFMREFNSKLVELGWVYENPTSRWASPVLPVRKA 457          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A225V0I6_9STRA (Reverse transcriptase domain-containing protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225V0I6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 3.690e-10
Identity = 28/79 (35.44%), Postives = 46/79 (58.23%), Query Frame = 1
Query:  223 IATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPK 459
            + T+ +++R+  G DPP+K+EP ++  KEGT P++ +PR   P    WM  F   LV LG +       W++P+ P+ K
Sbjct:  426 VVTRYDIWRLSIGNDPPSKIEPFEIRFKEGTVPIRCKPRTYAPAERDWMKGFNESLVALGWVYRNEASRWASPARPVKK 504          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6A4DRK1_9STRA (Reverse transcriptase domain-containing protein n=3 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4DRK1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 4.110e-10
Identity = 35/100 (35.00%), Postives = 58/100 (58.00%), Query Frame = 1
Query:  151 LETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLP 450
            LE  ++VA++  + L    +L+ ++  + + FRV FG DPP +VEP+QV LK G +PV+A+PR   P   +++    A L+  G++    +  W  PS P
Sbjct:  112 LEKKVEVAEKMGLTLDGRAKLRAILRVRVDCFRVEFGNDPPVRVEPMQVRLKAGASPVRAQPRRYSPNDRAFLDRHTAALLEHGLVFKNHRSRW--PSAP 209          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6G0K580_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0K580_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.030e-9
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   91 EQDPELMMDPAEEEKNRGLALETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPL 453
            E +  +  DP +++KN     E  +  A  +  P      L +V+  + +++R+  G DPP+K+EP  +  KEGT P++ RPR   P    WM  F   LV LG +       W++P+ P+
Sbjct:   49 ESETPMSFDPPDKKKNIAQLCEL-INEAVANGFPAERKRELFEVVM-RYDIWRIAIGNDPPSKIEPFVIQFKEGTLPIRCRPRTYAPAEREWMKAFNESLVKLGWVYRNEASRWASPARPV 167          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6G0LLF4_9STRA (Uncharacterized protein n=4 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0LLF4_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 1.780e-9
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  223 IATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPK 459
            +  + +++R+  G DPP+K+EP  +  KEGT P++ RPR   P    WM EF   L  LG +       W++P+ P+ K
Sbjct:  506 VVMRYDIWRIAIGNDPPSKIEPFIIQFKEGTLPIRCRPRTYAPAEREWMKEFNESLAKLGWVYRNEASRWASPARPVKK 584          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6G0QPC9_9STRA (Uncharacterized protein n=1 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6G0QPC9_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.900e-9
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   91 EQDPELMMDPAEEEKNRGLALETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPL 453
            E +  +  DP +++KN     E  +  A  +  P      L +V+  + +++R+  G DPP+K+EP  +  KEGT P++ RPR   P    WM  F   LV LG +       W++P+ P+
Sbjct:   49 ESETPMSFDPPDKKKNIAQLCEL-INEAVANGFPAERKRELFEVVM-RYDIWRIAIGNDPPSKIEPFVIQFKEGTLPIRCRPRTYAPAEREWMKAFNESLVKLGWVYRNEASRWASPARPV 167          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6A4B5P5_9STRA (RT_RNaseH domain-containing protein (Fragment) n=1 Tax=Phytophthora rubi TaxID=129364 RepID=A0A6A4B5P5_9STRA)

HSP 1 Score: 65.1 bits (157), Expect = 2.130e-9
Identity = 28/79 (35.44%), Postives = 44/79 (55.70%), Query Frame = 1
Query:  223 IATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPK 459
            +  + +++R+  G DPP+K+EP  +  KEGT P++ RPR   P    WM  F   LV LG +       W++P+ P+ K
Sbjct:   71 VVMRYDIWRIAIGNDPPSKIEPFVIQFKEGTLPIRCRPRTYAPAEREWMKAFNESLVKLGWVYRNEASRWASPARPVKK 149          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: A0A6A3X044_9STRA (RT_RNaseH domain-containing protein n=2 Tax=Phytophthora fragariae TaxID=53985 RepID=A0A6A3X044_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.090e-9
Identity = 37/121 (30.58%), Postives = 61/121 (50.41%), Query Frame = 1
Query:   91 EQDPELMMDPAEEEKNRGLALETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPL 453
            E +  +  DP +++KN     E  +  A  +  P      L +V+  + +++R+  G DPP+K+EP  +  KEGT P++ RPR   P    WM  F   LV LG +       W++P+ P+
Sbjct:  167 ESETPMSFDPPDKKKNIAQLCEL-INEAVANGFPAERKRELFEVVM-RYDIWRIAIGNDPPSKIEPFVIQFKEGTLPIRCRPRTYAPAEREWMKAFNESLVKLGWVYRNEASRWASPARPV 285          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: H3GMM3_PHYRM (RNA-directed DNA polymerase n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GMM3_PHYRM)

HSP 1 Score: 64.7 bits (156), Expect = 3.380e-9
Identity = 36/105 (34.29%), Postives = 58/105 (55.24%), Query Frame = 1
Query:  148 ALETSLQVAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPKS 462
            A+ET +Q A     P     +L+ ++    +++R+    DPPA+V P++V LKEG  P K +PR   P    ++ +F   LV LG++   P   W++P LP+ KS
Sbjct:  563 AVETLIQRALEHGFPPDKVDKLRLIVHAY-DVWRLVLRDDPPARVPPLEVRLKEGAQPTKCKPRKYPPHIRQFLRDFNEQLVALGLVYENPTSRWASPVLPVKKS 666          
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Match: G4ZJM0_PHYSP (Uncharacterized protein (Fragment) n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4ZJM0_PHYSP)

HSP 1 Score: 60.5 bits (145), Expect = 7.450e-9
Identity = 25/65 (38.46%), Postives = 38/65 (58.46%), Query Frame = 1
Query:  265 DPPAKVEPIQVVLKEGTTPVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPK 459
            DPP+K+EP ++  K+GT P++ RPR   P    WM +F   LV LG +       W++P+ P+ K
Sbjct:    1 DPPSKIEPFEIRFKDGTVPIRCRPRTYAPAEREWMKQFNESLVALGWVYRNEASRWASPARPVKK 65          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7599.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A225VYH6_9STRA2.830e-1034.29RNA-directed DNA polymerase n=1 Tax=Phytophthora m... [more]
A0A225V0I6_9STRA3.690e-1035.44Reverse transcriptase domain-containing protein n=... [more]
A0A6A4DRK1_9STRA4.110e-1035.00Reverse transcriptase domain-containing protein n=... [more]
A0A6G0K580_9STRA1.030e-930.58Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6G0LLF4_9STRA1.780e-935.44Uncharacterized protein n=4 Tax=Phytophthora fraga... [more]
A0A6G0QPC9_9STRA1.900e-930.58Uncharacterized protein n=1 Tax=Phytophthora fraga... [more]
A0A6A4B5P5_9STRA2.130e-935.44RT_RNaseH domain-containing protein (Fragment) n=1... [more]
A0A6A3X044_9STRA3.090e-930.58RT_RNaseH domain-containing protein n=2 Tax=Phytop... [more]
H3GMM3_PHYRM3.380e-934.29RNA-directed DNA polymerase n=1 Tax=Phytophthora r... [more]
G4ZJM0_PHYSP7.450e-938.46Uncharacterized protein (Fragment) n=1 Tax=Phytoph... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7599contigC-tenellus_contig7599:2673..3134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog164328.Phyra77764
PFAMsRVT_1,rve
Model size462
Max annot lvl4776|Peronosporales
Hectar predicted targeting categoryother localisation
Exons1
Evalue4.62e-10
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,3QDQ4@4776|Peronosporales
Descriptiontransposition, RNA-mediated
Cds size444
COG categoryL
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790046.056745-CDS-C-tenellus_contig7599:2672..31161680790046.056745-CDS-C-tenellus_contig7599:2672..3116Choristocarpus tenellus KU2346CDSC-tenellus_contig7599 2673..3116 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790046.0734458-UTR-C-tenellus_contig7599:3116..31341680790046.0734458-UTR-C-tenellus_contig7599:3116..3134Choristocarpus tenellus KU2346UTRC-tenellus_contig7599 3117..3134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7599.1.1prot_C-tenellus_contig7599.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7599 2673..3116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7599.1.1

>prot_C-tenellus_contig7599.1.1 ID=prot_C-tenellus_contig7599.1.1|Name=mRNA_C-tenellus_contig7599.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=148bp
MEVMQESIGTAHLDRVDDSVSTLLEQDPELMMDPAEEEKNRGLALETSLQ
VAQRSEMPLGAWGRLKQVIATQTNLFRVFFGRDPPAKVEPIQVVLKEGTT
PVKARPRASHPKRHSWMAEFVALLVVLGMLRWTPQDVWSNPSLPLPKS
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mRNA from alignment at C-tenellus_contig7599:2673..3134-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7599.1.1 ID=mRNA_C-tenellus_contig7599.1.1|Name=mRNA_C-tenellus_contig7599.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=462bp|location=Sequence derived from alignment at C-tenellus_contig7599:2673..3134- (Choristocarpus tenellus KU2346)
CTTTGGTTCAGTGTTAGCATGGAGGTGATGCAGGAAAGCATTGGGACTGC TCATTTGGACAGAGTCGATGACTCCGTCTCTACACTACTGGAGCAAGACC CTGAGCTCATGATGGACCCTGCAGAGGAGGAAAAAAATCGAGGCTTGGCA TTAGAAACCTCCTTACAAGTGGCACAACGATCCGAGATGCCCTTGGGTGC CTGGGGGCGCCTAAAACAAGTGATAGCAACCCAAACCAATTTGTTCCGGG TATTCTTTGGGCGTGATCCGCCTGCCAAGGTGGAGCCTATACAGGTGGTG CTGAAGGAAGGGACGACTCCTGTGAAGGCCAGACCCAGGGCATCCCATCC GAAGCGACACAGCTGGATGGCAGAATTTGTAGCCCTACTGGTCGTACTGG GGATGCTGAGGTGGACCCCACAGGATGTATGGAGCAACCCATCATTGCCT TTGCCCAAGTCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7599:2673..3134-

>mRNA_C-tenellus_contig7599.1.1 ID=mRNA_C-tenellus_contig7599.1.1|Name=mRNA_C-tenellus_contig7599.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=444bp|location=Sequence derived from alignment at C-tenellus_contig7599:2673..3134- (Choristocarpus tenellus KU2346)
ATGGAGGTGATGCAGGAAAGCATTGGGACTGCTCATTTGGACAGAGTCGA
TGACTCCGTCTCTACACTACTGGAGCAAGACCCTGAGCTCATGATGGACC
CTGCAGAGGAGGAAAAAAATCGAGGCTTGGCATTAGAAACCTCCTTACAA
GTGGCACAACGATCCGAGATGCCCTTGGGTGCCTGGGGGCGCCTAAAACA
AGTGATAGCAACCCAAACCAATTTGTTCCGGGTATTCTTTGGGCGTGATC
CGCCTGCCAAGGTGGAGCCTATACAGGTGGTGCTGAAGGAAGGGACGACT
CCTGTGAAGGCCAGACCCAGGGCATCCCATCCGAAGCGACACAGCTGGAT
GGCAGAATTTGTAGCCCTACTGGTCGTACTGGGGATGCTGAGGTGGACCC
CACAGGATGTATGGAGCAACCCATCATTGCCTTTGCCCAAGTCT
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