mRNA_C-tenellus_contig7488.1.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE) HSP 1 Score: 227 bits (579), Expect = 1.970e-62 Identity = 187/553 (33.82%), Postives = 243/553 (43.94%), Query Frame = 2 Query: 68 VLSDELLGVILSYSTPVELCGMQEVSSRFKDLASAESLWKLRAADII-SMERGSTAMAALQLCSYRQLVETFLRIGIPGEMVGYWRADVKCSLSMERPMAGFDSLYENACRTTTQHYDDTGSPWVNTRGELLRILLVKGGFYCESIEPDGATHGVFSLSVSPS-AGRGAGVLIDFTSHEGGGVANPLGAG-SMVPFSDFAS-----NYNAVGSLESKMIEKSGD-GFYLVRN-GCKRRYVALEP---QLPPVAPLKSVSDLSGLWSAPYGSHGLEILHVMVDP-CIQEEGT----------------------GNGDTSNTVSTSSGC-ITKTGDCYCKSN-----------------------------------------------------------SNNSTCHPYR----------------QLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPS-GFSVVWSEASEHVRVVVDFRRLQGCGVVWPE 1387 +L D+ + V+ S+++ +LC + EV RF L + LW+LRA DI+ S+ + +AM+ L+L S+RQLVE F IGIPG ++G+W+A E P +D + D T RGELLRI L GGF CESI P G +F++ VS + GR + I F E G S VP A + GS I SG F+L RN G RYV L P A +V +L GLW APYGSHGLEI+ + DP C E T G G +VS SS +T + C S NS H QL G K+ GD NVPAGK SFVI+L +D EL +D+RPVV+FL GA++ L+ R I W KGRGQINRVPG W PEWV V+ + Y G FSV++ + ++ VRVV+DF R GC WP+ Sbjct: 59 LLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQA--------EAPTLAWDVQQQQQ-----GGLDGTTVQQPEARGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGR---IKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSPGGAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQ 595
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI) HSP 1 Score: 188 bits (477), Expect = 7.990e-49 Identity = 166/505 (32.87%), Postives = 216/505 (42.77%), Query Frame = 2 Query: 233 MAALQLCSYRQLVETFLRIGIPGEMVGYWRADVKCSLS---MERPMAGFDSLYENACRTTTQHYDDTGSPWVNTRGELLRILLVKGGFYCESIEPDGATHGVFSLSVSPSA----GRGAGVLIDFTSHEGGGVANPLGAGSMVPFSDFASNYNAVGSLESKMIEKSGD-GFYLVRN-GCKRRYVALE--PQLPP--VAPLKSVSDLSGLWSAPYGSHGLEILHVMVDP-CIQEEGT--------------------------GNGDTSNTVSTSSGCIT----------------------KTGDCYCKSNSN-----------------------------------------NSTCHPYR----------------QLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPS-GFSVVWSEASEHVRVVVDFRRLQGCGVVWPE 1387 MA L+L S+RQLVE F IGIPG ++G+W+A+ +LS ++ G D T Q + RGELLRI L GGF CESI P+G +F++ VS + G L +S GG + G + + + GS + + SG F+L RN G RYV L P P VA +V +L GLW APYGSHGLEI+ + DP C +E T G G +VS GC T + G C S+ NS H QL G K+ GD NVPAGK SFVI+L +D EL +D+RPVV+FL GA++ L+ R I W GRGQINRVPG W PEWV V+ + Y G FSV++ + ++ VRVV+DF R GC WP+ Sbjct: 1 MAQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAP-TLSWDVQQQQQGGLDGA-------TVQERE--------ARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPPASSPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGGPRGSVS---GCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVLDDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQ 486
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A7S2WNK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNK3_9STRA) HSP 1 Score: 155 bits (391), Expect = 2.600e-36 Identity = 84/200 (42.00%), Postives = 114/200 (57.00%), Query Frame = 2 Query: 761 LEPQLPPVAPLKSVSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDFRRL 1360 + PQ P L V L GLW APYGSHGLEI+++ Q++ +G+ S V S +L G K++GD+NVPA +LSF +N+ Y+P L D R VV+F GA+I +L+ R NI WY+G GQINR+ GVW+P+WV +D LVY +GP GFSV+W E E +R ++DF RL Sbjct: 515 VSPQGTPSVALPPVLGLQGLWVAPYGSHGLEIVYLR----HQDQVSGDRRASGLVDGS-------------------------RLEGLKVVGDANVPASQLSFAVNMTQTYNPTDRLAMDHRLVVAFPPEGAVIADLNIRRDNIVAWYRGLGQINRIQGVWEPDWVGIDFLVYGSGPVGFSVLWDEQGEVIRHIIDFVRL 685
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A7S2B2Q2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2Q2_9STRA) HSP 1 Score: 139 bits (351), Expect = 1.030e-31 Identity = 84/194 (43.30%), Postives = 103/194 (53.09%), Query Frame = 2 Query: 806 DLSGLWSAPYGSHGLEIL-------HVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNG--PSGFSVVWSEASEHVRVVVDFRRL 1360 L GLW APYGSHGLEI+ V CI E K N P +L G K++GD+NVPA KLSFV++ Q+DP L D R VV+F GA+I +L R NI WY+G GQINR+ G W PEWV +D LVY NG P+GFSV+W E E +R V+DF +L Sbjct: 356 QLEGLWVAPYGSHGLEIVCLSHAEQRVPFHRCIDESA-------------------------KDGKNCPIGLP--RLEGLKVVGDANVPASKLSFVVDSSQQFDPSERLAMDHRLVVAFPPEGAVIADLMLRKHNITAWYRGMGQINRIQGEWAPEWVGIDFLVY-NGSSPTGFSVLWDEQGEVIRHVIDFSKL 521
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO) HSP 1 Score: 101 bits (252), Expect = 9.030e-21 Identity = 74/223 (33.18%), Postives = 96/223 (43.05%), Query Frame = 2 Query: 752 YVALEPQLPPVAPLKSVS--------DLSGLWSAPYGSHGLEILHV-MVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDFRRLQG----CGVVW 1381 Y ++PQ P A + S L GL A YG HGLE++ V M EE G G +L G K+ GD NVPA KLSFV L + DP L D RP+++F S G + L R + + G+GQINR P VW PEWV V + Y GFS++W + E R ++DF L+ G W Sbjct: 22 YQRVQPQQPLHASVSMESRAVFQRMEHLCGLSMAQYGGHGLEVIQVFMTQDMAPEETAGIGGL--------------------------------RLVGLKLTGDPNVPATKLSFVAALTEPDDPEGVLA-DLRPIIAFPSTGPAVVNLQDR--EVAGLFLGKGQINRDPDVWAPEWVDVRLITYSGQRKGFSILWHDMGEFWRHIIDFAPLESPDAWAGAAW 209
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A482SES7_9ARCH (DUF3506 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SES7_9ARCH) HSP 1 Score: 100 bits (248), Expect = 5.030e-19 Identity = 71/205 (34.63%), Postives = 94/205 (45.85%), Query Frame = 2 Query: 800 VSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSF---LSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYV----NGPSGFSVVWSEASEHVRVVVDFRRLQGC--GVVWPE 1387 V GL++APYGSHG EILH+ V N + QL G KI GD NVPA +LSF +NL D L+ D RPVV F L A+I L R ++ W +G GQINR P VW PEWV ++Y + + F++VW + S+ R +DF+ L G++ PE Sbjct: 206 VQGCLGLFTAPYGSHGTEILHLSVHTQSMPSAIQNSELD---------------------------FGLLQLHGLKITGDPNVPASQLSFCVNLLSLLDIHDALQQDQRPVVMFPSLLQPPAVISLLD-RSAHMLLWARGYGQINRDPRVWSPEWVGCGFILYKTSLPDSLARFTIVWDDESDMFRHGMDFKALSMASEGILIPE 382
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A2P6TTM3_CHLSO (F-box only 31-B-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTM3_CHLSO) HSP 1 Score: 74.3 bits (181), Expect = 2.140e-10 Identity = 56/199 (28.14%), Postives = 85/199 (42.71%), Query Frame = 2 Query: 791 LKSVSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLD---------DQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSG-FSVVWSEASEHVRVVVDFRR 1357 L+S+++ G+ + YG HG+E+L + V ++ G C + +L G K++GD NVPA K SFV + D DP ARP ++F G + ++ R +F + GQIN VPG WQP+WV LVY G +V++ + E R +DF Sbjct: 263 LESITNRRGVRTGSYGPHGMEVLQLAVSSSQEDAPPG--------------------CPIQG----------PRLQGLKLLGDPNVPALKHSFVADATSCRMGPYDRDTDDPFAPGPGLARPCLAFFQHGTALVDVEARPVLARF--RAVGQINMVPGQWQPDWVPATVLVYAPPMDGTLTVIFEDEGEPFRHAIDFEE 429
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: W7TAG1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG1_9STRA) HSP 1 Score: 72.8 bits (177), Expect = 6.720e-10 Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 2 Query: 773 LPPVAPLKSVS----------DLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLD-DQYDPVVELENDARPVVSFLSGGALIGE---LSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVN----GPSGFSVVWSEASEHVRVVVDFRRL 1360 L P+AP S+S DL GLW YGSHG EI+ V + + G+ TS ++ G + L G K++GD+NVPA + +F ++ D L D RP+ S + ++ + L+ I+ Y+G+GQ+N VPG+W+P+ V VD ++ G G ++W + R ++ RL Sbjct: 233 LHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRLWTD---GSAGTSPSIG---GRVI---------------------LEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTT--RMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRL 417
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A5J4XZB5_9CHLO (F-box domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZB5_9CHLO) HSP 1 Score: 58.2 bits (139), Expect = 2.890e-5 Identity = 47/185 (25.41%), Postives = 74/185 (40.00%), Query Frame = 2 Query: 815 GLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCH------PYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDF 1351 GLW+A YG+HG EI+HV + + + + T H P +L G K+ GD NVPA + +F E A ++ +G + ++ R +F +GR IN P ++PEWV + Y FSV++ + E R ++DF Sbjct: 272 GLWTAWYGAHGPEIVHVWFEKSLLKHSS------------------------------VTAHEEPDHLPRPRLVGCKVTGDPNVPANQWTF--------------EAQAADMLVKFNGLPTLVDMREREVQARFCCQGR--INHDPADYKPEWVPAQLITYEGPKPMFSVLFDDLQERFRHIMDF 410 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 9
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7488.1.1 >prot_C-tenellus_contig7488.1.1 ID=prot_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=423bp MQEVSSRFKDLASAESLWKLRAADIISMERGSTAMAALQLCSYRQLVETFback to top mRNA from alignment at C-tenellus_contig7488:3237..5299- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7488.1.1 ID=mRNA_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2063bp|location=Sequence derived from alignment at C-tenellus_contig7488:3237..5299- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7488:3237..5299- >mRNA_C-tenellus_contig7488.1.1 ID=mRNA_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1269bp|location=Sequence derived from alignment at C-tenellus_contig7488:3237..5299- (Choristocarpus tenellus KU2346)back to top |