mRNA_C-tenellus_contig7488.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7488.1.1
Unique NamemRNA_C-tenellus_contig7488.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A6H5JVR9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVR9_9PHAE)

HSP 1 Score: 227 bits (579), Expect = 1.970e-62
Identity = 187/553 (33.82%), Postives = 243/553 (43.94%), Query Frame = 2
Query:   68 VLSDELLGVILSYSTPVELCGMQEVSSRFKDLASAESLWKLRAADII-SMERGSTAMAALQLCSYRQLVETFLRIGIPGEMVGYWRADVKCSLSMERPMAGFDSLYENACRTTTQHYDDTGSPWVNTRGELLRILLVKGGFYCESIEPDGATHGVFSLSVSPS-AGRGAGVLIDFTSHEGGGVANPLGAG-SMVPFSDFAS-----NYNAVGSLESKMIEKSGD-GFYLVRN-GCKRRYVALEP---QLPPVAPLKSVSDLSGLWSAPYGSHGLEILHVMVDP-CIQEEGT----------------------GNGDTSNTVSTSSGC-ITKTGDCYCKSN-----------------------------------------------------------SNNSTCHPYR----------------QLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPS-GFSVVWSEASEHVRVVVDFRRLQGCGVVWPE 1387
            +L D+ + V+ S+++  +LC + EV  RF  L   + LW+LRA DI+ S+ +  +AM+ L+L S+RQLVE F  IGIPG ++G+W+A        E P   +D   +          D T       RGELLRI L  GGF CESI P G    +F++ VS +  GR   + I F   E        G   S VP    A       +   GS     I  SG   F+L RN G   RYV L       P  A   +V +L GLW APYGSHGLEI+ +  DP C   E T                      G G    +VS SS   +T   +  C S                                                              NS  H                   QL G K+ GD NVPAGK SFVI+L   +D   EL +D+RPVV+FL  GA++  L+ R   I  W KGRGQINRVPG W PEWV V+ + Y  G    FSV++ + ++ VRVV+DF R  GC   WP+
Sbjct:   59 LLDDDTINVVASFASCHDLCVLAEVCRRFSPLPFCDDLWELRALDILPSVPQVHSAMSQLKLTSFRQLVEAFTLIGIPGGVLGFWQA--------EAPTLAWDVQQQQQ-----GGLDGTTVQQPEARGELLRITLEAGGFLCESIAPSGTRRRIFTIRVSKTPTGR---IKIGFFCLEKESALTIGGDNDSWVPGDSMAEALARYTFAIPGSTRRTPIRASGTKAFFLERNDGRTCRYVKLTAPPASSPGGAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPNEETAAAAVKAATVVKLSSLSQSWAGGRGGRRGSVSGSSTSRVTDGSESVCTSTPATDADGSEADSCDEAGGXXXXXXXXXXXXXXXXXXSSDGHGDIESVLDDGCLASIARRKGNSLHHADTATAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRKGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQ 595          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: D7FWS5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWS5_ECTSI)

HSP 1 Score: 188 bits (477), Expect = 7.990e-49
Identity = 166/505 (32.87%), Postives = 216/505 (42.77%), Query Frame = 2
Query:  233 MAALQLCSYRQLVETFLRIGIPGEMVGYWRADVKCSLS---MERPMAGFDSLYENACRTTTQHYDDTGSPWVNTRGELLRILLVKGGFYCESIEPDGATHGVFSLSVSPSA----GRGAGVLIDFTSHEGGGVANPLGAGSMVPFSDFASNYNAVGSLESKMIEKSGD-GFYLVRN-GCKRRYVALE--PQLPP--VAPLKSVSDLSGLWSAPYGSHGLEILHVMVDP-CIQEEGT--------------------------GNGDTSNTVSTSSGCIT----------------------KTGDCYCKSNSN-----------------------------------------NSTCHPYR----------------QLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPS-GFSVVWSEASEHVRVVVDFRRLQGCGVVWPE 1387
            MA L+L S+RQLVE F  IGIPG ++G+W+A+   +LS    ++   G D         T Q  +         RGELLRI L  GGF CESI P+G    +F++ VS +       G   L   +S   GG  +    G  +  +     +   GS +   +  SG   F+L RN G   RYV L   P   P  VA   +V +L GLW APYGSHGLEI+ +  DP C  +E T                          G G    +VS   GC T                      + G C     S+                                         NS  H                   QL G K+ GD NVPAGK SFVI+L   +D   EL +D+RPVV+FL  GA++  L+ R   I  W  GRGQINRVPG W PEWV V+ + Y  G    FSV++ + ++ VRVV+DF R  GC   WP+
Sbjct:    1 MAQLKLTSFRQLVEAFTLIGIPGGVLGFWQAEAP-TLSWDVQQQQQGGLDGA-------TVQERE--------ARGELLRITLEAGGFLCESIAPNGTRRRIFTIRVSKTPTDRINIGFFCLEKESSLTIGGDDDSWVPGDSMAEALARYTFAVPGSTKRTPMRASGTKAFFLERNDGRTCRYVKLTAPPASSPGVVAAAGAVKNLCGLWCAPYGSHGLEIIQLSTDPSCSPDEETAAAXXXXXXKAATVAKLSSLSQSWAGGRGGPRGSVS---GCSTSRMTDGSESVCTSTPATDADGSEAGSCDEAGGSSEXXXXXXXXXXXXXSSDGDGDGDVESVLDDVCLASIARRKGNSLHHADTGTAGSGAGAGDASVPSQLFGFKVTGDDNVPAGKTSFVIDLSTDFDVDEELRSDSRPVVTFLPTGAVMANLANRRQQISCWRNGRGQINRVPGRWSPEWVDVEFVEYRAGSRCAFSVIFRQPNQAVRVVMDFERALGCEEEWPQ 486          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A7S2WNK3_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WNK3_9STRA)

HSP 1 Score: 155 bits (391), Expect = 2.600e-36
Identity = 84/200 (42.00%), Postives = 114/200 (57.00%), Query Frame = 2
Query:  761 LEPQLPPVAPLKSVSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDFRRL 1360
            + PQ  P   L  V  L GLW APYGSHGLEI+++      Q++ +G+   S  V  S                         +L G K++GD+NVPA +LSF +N+   Y+P   L  D R VV+F   GA+I +L+ R  NI  WY+G GQINR+ GVW+P+WV +D LVY +GP GFSV+W E  E +R ++DF RL
Sbjct:  515 VSPQGTPSVALPPVLGLQGLWVAPYGSHGLEIVYLR----HQDQVSGDRRASGLVDGS-------------------------RLEGLKVVGDANVPASQLSFAVNMTQTYNPTDRLAMDHRLVVAFPPEGAVIADLNIRRDNIVAWYRGLGQINRIQGVWEPDWVGIDFLVYGSGPVGFSVLWDEQGEVIRHIIDFVRL 685          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A7S2B2Q2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2B2Q2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 1.030e-31
Identity = 84/194 (43.30%), Postives = 103/194 (53.09%), Query Frame = 2
Query:  806 DLSGLWSAPYGSHGLEIL-------HVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNG--PSGFSVVWSEASEHVRVVVDFRRL 1360
             L GLW APYGSHGLEI+        V    CI E                           K   N     P  +L G K++GD+NVPA KLSFV++   Q+DP   L  D R VV+F   GA+I +L  R  NI  WY+G GQINR+ G W PEWV +D LVY NG  P+GFSV+W E  E +R V+DF +L
Sbjct:  356 QLEGLWVAPYGSHGLEIVCLSHAEQRVPFHRCIDESA-------------------------KDGKNCPIGLP--RLEGLKVVGDANVPASKLSFVVDSSQQFDPSERLAMDHRLVVAFPPEGAVIADLMLRKHNITAWYRGMGQINRIQGEWAPEWVGIDFLVY-NGSSPTGFSVLWDEQGEVIRHVIDFSKL 521          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A061QLQ6_9CHLO (Uncharacterized protein n=2 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061QLQ6_9CHLO)

HSP 1 Score: 101 bits (252), Expect = 9.030e-21
Identity = 74/223 (33.18%), Postives = 96/223 (43.05%), Query Frame = 2
Query:  752 YVALEPQLPPVAPLKSVS--------DLSGLWSAPYGSHGLEILHV-MVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDFRRLQG----CGVVW 1381
            Y  ++PQ P  A +   S         L GL  A YG HGLE++ V M      EE  G G                                  +L G K+ GD NVPA KLSFV  L +  DP   L  D RP+++F S G  +  L  R   +   + G+GQINR P VW PEWV V  + Y     GFS++W +  E  R ++DF  L+      G  W
Sbjct:   22 YQRVQPQQPLHASVSMESRAVFQRMEHLCGLSMAQYGGHGLEVIQVFMTQDMAPEETAGIGGL--------------------------------RLVGLKLTGDPNVPATKLSFVAALTEPDDPEGVLA-DLRPIIAFPSTGPAVVNLQDR--EVAGLFLGKGQINRDPDVWAPEWVDVRLITYSGQRKGFSILWHDMGEFWRHIIDFAPLESPDAWAGAAW 209          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A482SES7_9ARCH (DUF3506 domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SES7_9ARCH)

HSP 1 Score: 100 bits (248), Expect = 5.030e-19
Identity = 71/205 (34.63%), Postives = 94/205 (45.85%), Query Frame = 2
Query:  800 VSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSF---LSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYV----NGPSGFSVVWSEASEHVRVVVDFRRLQGC--GVVWPE 1387
            V    GL++APYGSHG EILH+ V          N +                                 QL G KI GD NVPA +LSF +NL    D    L+ D RPVV F   L   A+I  L  R  ++  W +G GQINR P VW PEWV    ++Y     +  + F++VW + S+  R  +DF+ L     G++ PE
Sbjct:  206 VQGCLGLFTAPYGSHGTEILHLSVHTQSMPSAIQNSELD---------------------------FGLLQLHGLKITGDPNVPASQLSFCVNLLSLLDIHDALQQDQRPVVMFPSLLQPPAVISLLD-RSAHMLLWARGYGQINRDPRVWSPEWVGCGFILYKTSLPDSLARFTIVWDDESDMFRHGMDFKALSMASEGILIPE 382          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A2P6TTM3_CHLSO (F-box only 31-B-like n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TTM3_CHLSO)

HSP 1 Score: 74.3 bits (181), Expect = 2.140e-10
Identity = 56/199 (28.14%), Postives = 85/199 (42.71%), Query Frame = 2
Query:  791 LKSVSDLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLD---------DQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSG-FSVVWSEASEHVRVVVDFRR 1357
            L+S+++  G+ +  YG HG+E+L + V    ++   G                    C  +            +L G K++GD NVPA K SFV +           D  DP       ARP ++F   G  + ++  R    +F  +  GQIN VPG WQP+WV    LVY     G  +V++ +  E  R  +DF  
Sbjct:  263 LESITNRRGVRTGSYGPHGMEVLQLAVSSSQEDAPPG--------------------CPIQG----------PRLQGLKLLGDPNVPALKHSFVADATSCRMGPYDRDTDDPFAPGPGLARPCLAFFQHGTALVDVEARPVLARF--RAVGQINMVPGQWQPDWVPATVLVYAPPMDGTLTVIFEDEGEPFRHAIDFEE 429          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: W7TAG1_9STRA (Uncharacterized protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TAG1_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 6.720e-10
Identity = 60/214 (28.04%), Postives = 96/214 (44.86%), Query Frame = 2
Query:  773 LPPVAPLKSVS----------DLSGLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKIIGDSNVPAGKLSFVINLD-DQYDPVVELENDARPVVSFLSGGALIGE---LSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVN----GPSGFSVVWSEASEHVRVVVDFRRL 1360
            L P+AP  S+S          DL GLW   YGSHG EI+ V +     +   G+  TS ++    G +                      L G K++GD+NVPA + +F  ++     D    L  D RP+ S  +   ++ +   L+     I+  Y+G+GQ+N VPG+W+P+ V VD ++       G  G  ++W +     R  ++  RL
Sbjct:  233 LHPLAPCLSLSASGGQLREFEDLQGLWRGVYGSHGWEIIQVRLRRLWTD---GSAGTSPSIG---GRVI---------------------LEGLKLVGDANVPANEWTFRADVTAPPLDRAEALGADTRPIYSLTT--RMVPQSWVLAEEAGRIRAVYRGKGQVNMVPGIWEPQEVGVDVMLLRREENGGRGGIWLLWHDEGFSSRHCIELTRL 417          
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Match: A0A5J4XZB5_9CHLO (F-box domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4XZB5_9CHLO)

HSP 1 Score: 58.2 bits (139), Expect = 2.890e-5
Identity = 47/185 (25.41%), Postives = 74/185 (40.00%), Query Frame = 2
Query:  815 GLWSAPYGSHGLEILHVMVDPCIQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCH------PYRQLSGNKIIGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTRLPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEHVRVVVDF 1351
            GLW+A YG+HG EI+HV  +  + +  +                               T H      P  +L G K+ GD NVPA + +F              E  A  ++   +G   + ++  R    +F  +GR  IN  P  ++PEWV    + Y      FSV++ +  E  R ++DF
Sbjct:  272 GLWTAWYGAHGPEIVHVWFEKSLLKHSS------------------------------VTAHEEPDHLPRPRLVGCKVTGDPNVPANQWTF--------------EAQAADMLVKFNGLPTLVDMREREVQARFCCQGR--INHDPADYKPEWVPAQLITYEGPKPMFSVLFDDLQERFRHIMDF 410          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7488.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
A0A6H5JVR9_9PHAE1.970e-6233.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWS5_ECTSI7.990e-4932.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2WNK3_9STRA2.600e-3642.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2B2Q2_9STRA1.030e-3143.30Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A061QLQ6_9CHLO9.030e-2133.18Uncharacterized protein n=2 Tax=Tetraselmis sp. GS... [more]
A0A482SES7_9ARCH5.030e-1934.63DUF3506 domain-containing protein n=1 Tax=archaeon... [more]
A0A2P6TTM3_CHLSO2.140e-1028.14F-box only 31-B-like n=1 Tax=Chlorella sorokiniana... [more]
W7TAG1_9STRA6.720e-1028.04Uncharacterized protein n=2 Tax=Monodopsidaceae Ta... [more]
A0A5J4XZB5_9CHLO2.890e-525.41F-box domain-containing protein n=1 Tax=Trebouxia ... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7488contigC-tenellus_contig7488:3237..5299 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1834
Hectar predicted targeting categoryother localisation
Exons2
Cds size1269
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.890212-UTR-C-tenellus_contig7488:3236..36711680790038.890212-UTR-C-tenellus_contig7488:3236..3671Choristocarpus tenellus KU2346UTRC-tenellus_contig7488 3237..3671 -
1680790038.9324667-UTR-C-tenellus_contig7488:5169..52991680790038.9324667-UTR-C-tenellus_contig7488:5169..5299Choristocarpus tenellus KU2346UTRC-tenellus_contig7488 5170..5299 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.9051697-CDS-C-tenellus_contig7488:3671..45451680790038.9051697-CDS-C-tenellus_contig7488:3671..4545Choristocarpus tenellus KU2346CDSC-tenellus_contig7488 3672..4545 -
1680790038.9201474-CDS-C-tenellus_contig7488:4774..51691680790038.9201474-CDS-C-tenellus_contig7488:4774..5169Choristocarpus tenellus KU2346CDSC-tenellus_contig7488 4775..5169 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7488.1.1prot_C-tenellus_contig7488.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7488 3672..5169 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7488.1.1

>prot_C-tenellus_contig7488.1.1 ID=prot_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=423bp
MQEVSSRFKDLASAESLWKLRAADIISMERGSTAMAALQLCSYRQLVETF
LRIGIPGEMVGYWRADVKCSLSMERPMAGFDSLYENACRTTTQHYDDTGS
PWVNTRGELLRILLVKGGFYCESIEPDGATHGVFSLSVSPSAGRGAGVLI
DFTSHEGGGVANPLGAGSMVPFSDFASNYNAVGSLESKMIEKSGDGFYLV
RNGCKRRYVALEPQLPPVAPLKSVSDLSGLWSAPYGSHGLEILHVMVDPC
IQEEGTGNGDTSNTVSTSSGCITKTGDCYCKSNSNNSTCHPYRQLSGNKI
IGDSNVPAGKLSFVINLDDQYDPVVELENDARPVVSFLSGGALIGELSTR
LPNIKFWYKGRGQINRVPGVWQPEWVSVDCLVYVNGPSGFSVVWSEASEH
VRVVVDFRRLQGCGVVWPETVQ*
back to top

mRNA from alignment at C-tenellus_contig7488:3237..5299-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7488.1.1 ID=mRNA_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2063bp|location=Sequence derived from alignment at C-tenellus_contig7488:3237..5299- (Choristocarpus tenellus KU2346)
CACCTGCGGAACAAGGCGATGGAACTCTTCGTTAAAGCATAGACGGGGAC CAACAGAGGGAGATGCTGTACTCTCGGACGAGTTGTTGGGTGTGATTTTA TCGTACTCCACCCCTGTTGAACTCTGCGGGATGCAAGAGGTGTCTTCTCG ATTCAAAGACTTGGCATCAGCCGAGTCTCTATGGAAACTCCGTGCTGCAG ATATCATCAGCATGGAACGGGGTTCGACAGCTATGGCTGCCTTGCAGCTC TGCAGTTACCGGCAGCTTGTGGAGACCTTCCTCCGCATTGGGATCCCAGG GGAGATGGTTGGGTATTGGCGGGCTGATGTGAAGTGCTCCCTGAGCATGG AGCGTCCCATGGCAGGTTTCGATTCTTTATACGAAAATGCCTGCAGAACT ACAACGCAGCACTATGATGATACTGGAAGTCCCTGGGTGAATACGCGTGG TGAGCTGCTCCGTATCCTCCTCGTCAAGGGCGGATTCTATTGTGAGAGCA TCGAGCCTGATGGAGCCACACACGGGTGAGACAATGATCCCGCCGTCAAC CACGAGTCTTTGTCAAGTGAAAGTCATGATATATTCAGTTTTATCGGCAG GGTAGACTGACTTTTGTCTGCACGGTTTGAGGTTAGGTCCTTGCAAATGT TACAGCCCATAACTTTGTTGCAGCCCATAAATATCAGTTCCCCCTAGAAT ACCTGAACTTACTCGAAATTCTTTCCGTCAATACCTCGCGGTTTGCAAAT TCAGGGTATTCTCTCTGAGCGTGTCACCTTCAGCGGGAAGAGGTGCTGGG GTACTTATCGATTTCACCTCGCATGAAGGTGGCGGAGTGGCGAACCCCTT GGGGGCTGGTAGCATGGTTCCATTCTCGGACTTCGCAAGCAATTACAATG CAGTTGGGAGCCTGGAATCCAAGATGATAGAGAAATCTGGTGATGGCTTC TACTTGGTACGGAATGGCTGTAAGCGACGTTATGTTGCACTTGAACCACA ACTCCCTCCAGTCGCCCCGCTGAAATCTGTGTCTGATCTCAGCGGTCTGT GGTCCGCCCCATACGGTAGTCATGGCCTCGAGATACTTCACGTGATGGTC GACCCCTGTATTCAGGAGGAGGGGACTGGCAATGGGGATACCTCGAATAC AGTCAGCACATCAAGTGGATGCATTACCAAAACTGGTGATTGTTACTGCA AGAGCAACAGTAATAACAGCACCTGTCACCCATACCGACAGCTCTCTGGA AACAAGATTATTGGTGACTCCAATGTGCCTGCAGGCAAATTGTCATTTGT CATCAACCTCGATGATCAGTATGACCCAGTTGTAGAGCTAGAGAATGATG CCAGACCTGTGGTGTCTTTCCTGTCAGGGGGAGCCTTGATTGGAGAACTA TCCACACGCCTTCCCAATATAAAGTTTTGGTACAAAGGCCGCGGTCAGAT CAACCGTGTTCCAGGTGTTTGGCAACCAGAGTGGGTGTCAGTTGACTGCC TTGTTTATGTAAATGGCCCAAGTGGGTTCTCGGTGGTGTGGAGTGAAGCT AGTGAGCATGTCCGGGTTGTGGTTGACTTTAGGCGCCTACAGGGATGCGG GGTGGTTTGGCCAGAAACAGTTCAATGATATCTTGTCTAACAGCTTCTTA CGGGTTGACTGATTTATCCATTAGAGTAATTTGATTTTCCAGCTGCACTG TGTATTGACTGCAAAACTCTTGGTATGCATAGAGGCCGACTACAAGACAC CATGGAGGTGTTGAGGCTAGCTTGTATGATTTGTTGCTTTGATTTATCTT CTGTGTTACAGAACTTTTTTTTGTGAACATACGCTCAACAGGTCTTCTGT AGAACAGTGGGGTAAAAAGAACTGACTCTACATAAACTTGAAACACACCA TTCCATCCTGAGATTTTATCTTGCGCTTATGACCTTCCTCTTATGTTGCT ATCCCCCACCGATCAACTCCAAGTCAAGGAGAATGTTACAGGAGAAATTT GCAGAATGAGATACTACTCGGTGTTCAAGCATCACATATTCATAATGACA AATGGCCTAGGGC
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7488:3237..5299-

>mRNA_C-tenellus_contig7488.1.1 ID=mRNA_C-tenellus_contig7488.1.1|Name=mRNA_C-tenellus_contig7488.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1269bp|location=Sequence derived from alignment at C-tenellus_contig7488:3237..5299- (Choristocarpus tenellus KU2346)
ATGCAAGAGGTGTCTTCTCGATTCAAAGACTTGGCATCAGCCGAGTCTCT
ATGGAAACTCCGTGCTGCAGATATCATCAGCATGGAACGGGGTTCGACAG
CTATGGCTGCCTTGCAGCTCTGCAGTTACCGGCAGCTTGTGGAGACCTTC
CTCCGCATTGGGATCCCAGGGGAGATGGTTGGGTATTGGCGGGCTGATGT
GAAGTGCTCCCTGAGCATGGAGCGTCCCATGGCAGGTTTCGATTCTTTAT
ACGAAAATGCCTGCAGAACTACAACGCAGCACTATGATGATACTGGAAGT
CCCTGGGTGAATACGCGTGGTGAGCTGCTCCGTATCCTCCTCGTCAAGGG
CGGATTCTATTGTGAGAGCATCGAGCCTGATGGAGCCACACACGGGGTAT
TCTCTCTGAGCGTGTCACCTTCAGCGGGAAGAGGTGCTGGGGTACTTATC
GATTTCACCTCGCATGAAGGTGGCGGAGTGGCGAACCCCTTGGGGGCTGG
TAGCATGGTTCCATTCTCGGACTTCGCAAGCAATTACAATGCAGTTGGGA
GCCTGGAATCCAAGATGATAGAGAAATCTGGTGATGGCTTCTACTTGGTA
CGGAATGGCTGTAAGCGACGTTATGTTGCACTTGAACCACAACTCCCTCC
AGTCGCCCCGCTGAAATCTGTGTCTGATCTCAGCGGTCTGTGGTCCGCCC
CATACGGTAGTCATGGCCTCGAGATACTTCACGTGATGGTCGACCCCTGT
ATTCAGGAGGAGGGGACTGGCAATGGGGATACCTCGAATACAGTCAGCAC
ATCAAGTGGATGCATTACCAAAACTGGTGATTGTTACTGCAAGAGCAACA
GTAATAACAGCACCTGTCACCCATACCGACAGCTCTCTGGAAACAAGATT
ATTGGTGACTCCAATGTGCCTGCAGGCAAATTGTCATTTGTCATCAACCT
CGATGATCAGTATGACCCAGTTGTAGAGCTAGAGAATGATGCCAGACCTG
TGGTGTCTTTCCTGTCAGGGGGAGCCTTGATTGGAGAACTATCCACACGC
CTTCCCAATATAAAGTTTTGGTACAAAGGCCGCGGTCAGATCAACCGTGT
TCCAGGTGTTTGGCAACCAGAGTGGGTGTCAGTTGACTGCCTTGTTTATG
TAAATGGCCCAAGTGGGTTCTCGGTGGTGTGGAGTGAAGCTAGTGAGCAT
GTCCGGGTTGTGGTTGACTTTAGGCGCCTACAGGGATGCGGGGTGGTTTG
GCCAGAAACAGTTCAATGA
back to top