mRNA_C-tenellus_contig7483.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7483.1.1
Unique NamemRNA_C-tenellus_contig7483.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: D8LFS3_ECTSI (Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS3_ECTSI)

HSP 1 Score: 148 bits (374), Expect = 5.190e-39
Identity = 76/132 (57.58%), Postives = 86/132 (65.15%), Query Frame = 1
Query:  238 MLSSIVRSVGVAARGA--RPQTPALLQVWRGMCI-------------DGKIPEGHAVGRQKQEQEKSPFNRDPIFPPKGSGTKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKLVP 588
            M S++ R VGVAAR A  RPQ P     WR                 DG IP+ H  GRQK E+E   FNRDPI PPKGSGTK MP EVPS+H ERVVGFEHPE+H + WF + AGK+HYV EID+YFKLVP
Sbjct:    1 MFSTVARHVGVAARAAALRPQ-PTAAAAWRASAAALPQVARFSDGVGDGGIPDTHDTGRQKTEREGVGFNRDPIHPPKGSGTKAMPFEVPSEHQERVVGFEHPESHAMYWFPLAAGKLHYVEEIDRYFKLVP 131          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A6U3QRH7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A6U3QRH7_9STRA)

HSP 1 Score: 104 bits (260), Expect = 4.890e-23
Identity = 52/83 (62.65%), Postives = 57/83 (68.67%), Query Frame = 1
Query:  355 HAVGRQKQEQEKSP-----FNRDPIFPPKGSGTKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKLVP 588
            H  GR+ QE E        FNRDPI PP G+GTK  PI+VPS +DERVVGFE P  H L WF M AGK+HYVS IDKYF LVP
Sbjct:   45 HQGGRRLQEIEDEKLGLVTFNRDPIMPPVGAGTKENPIQVPSGYDERVVGFEDPTVHQLQWFTMTAGKLHYVSSIDKYFTLVP 127          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A7S1XX62_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XX62_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 4.530e-20
Identity = 57/123 (46.34%), Postives = 71/123 (57.72%), Query Frame = 1
Query:  241 LSSIVRSVGVAARGARPQTPALLQVWRGMCI--DGKIP--EGHAVGRQKQE--QEKSP---FNRDPIFPPKGSGTKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            L + +R +  AA    P  P      R + I  DG IP  E    GR+K E   EKS    FNRDPI PP G+GTK  PI VPS+  ERVVGFE P+TH + WF ++A   +Y+  +DKYFKL
Sbjct:    6 LRTSMRPLAAAAARRAPMAPV-----RALAIESDGLIPDIEDQVFGRRKMELDAEKSGDLLFNRDPIVPPVGAGTKENPILVPSEFKERVVGFEDPDTHQIAWFCLQADATYYIESVDKYFKL 123          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A6U1NDJ1_9STRA (Hypothetical protein n=2 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A6U1NDJ1_9STRA)

HSP 1 Score: 87.0 bits (214), Expect = 8.020e-17
Identity = 49/123 (39.84%), Postives = 67/123 (54.47%), Query Frame = 1
Query:  238 MLSSIVRSVGVAARGARPQTPALLQVWRGMCIDGKIP--EGHAVGRQKQEQEKSP-----FNRDPIFPPKGSGTKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKLV 585
            MLS++ RS  +         PA   + R + +DGK+P  E    G +K E E+       + RDP+ P  G GT   PI VPS   ER VGFE P +H + WF ++ G +H+V EID YFKL+
Sbjct:    1 MLSAVRRSSALTQVTTAVVAPASHILGRFLAVDGKVPQDEEQQYGDRKYELEQEAKKEVAYVRDPVIPEPGQGTLANPILVPSAMKERAVGFEDPLSHQMQWFVLQEGDIHWVEEIDMYFKLI 123          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A024FVF4_9STRA (Uncharacterized protein n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024FVF4_9STRA)

HSP 1 Score: 73.6 bits (179), Expect = 5.790e-12
Identity = 38/82 (46.34%), Postives = 52/82 (63.41%), Query Frame = 1
Query:  355 HAVGRQKQEQEKSP-----FNRDPIFPPKGSG-TKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            HAVGRQ++E E        FNRDPI   +  G +K  PI VPS +D R +G  H ++  + WFN++ GK+ YV +I+KYFKL
Sbjct:   33 HAVGRQREELEDEKAGIITFNRDPIETDETQGNSKEDPILVPSFNDVRPIGVSHNDSSYVFWFNLQKGKIFYVPQIEKYFKL 114          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A1W0A2M6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2M6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 2.010e-11
Identity = 39/81 (48.15%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  358 AVGRQKQEQEKSP-----FNRDPIFPPKGSG-TKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            AVGRQ  E + +      F+RDPIF  +  G +K+ PI VPS   ERVVG  H ++  + WFN+  GKV+YV + DKYFKL
Sbjct:   32 AVGRQGDELKMAEQGIDLFSRDPIFSEETQGNSKDDPILVPSFQSERVVGISHNDSPYIKWFNLHEGKVYYVPDYDKYFKL 112          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A485KGU5_9STRA (Aste57867_13701 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KGU5_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.750e-11
Identity = 36/81 (44.44%), Postives = 51/81 (62.96%), Query Frame = 1
Query:  358 AVGRQKQEQEKSP-----FNRDPIFPPKGSG-TKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            A+GRQ +E   +      FNRDP+   +  G +K+ PI VPS + +R VG  H ++  ++WFN+  GKVHYV + DKYFKL
Sbjct:   32 AIGRQGEELHLAEEGIELFNRDPVSSEEHQGNSKDDPILVPSFNSQRAVGISHNDSPYIVWFNLDEGKVHYVPQFDKYFKL 112          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: T0PQP9_SAPDV (Uncharacterized protein n=2 Tax=Saprolegniaceae TaxID=4764 RepID=T0PQP9_SAPDV)

HSP 1 Score: 67.0 bits (162), Expect = 7.930e-10
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  358 AVGRQKQEQEKSP-----FNRDPIFPPKGSG-TKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            AVGRQ  E + +      F+RDPIF  +  G +K  PI VPS +  R +G  H ++  + WFN+  GKV YV + DKYFKL
Sbjct:   30 AVGRQGAELKLAEEGIELFSRDPIFTEESQGNSKENPILVPSFNSHRAIGISHNDSPYIKWFNLHEGKVFYVPDYDKYFKL 110          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: D8LFS5_ECTSI (Aa_trans domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LFS5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.040e-9
Identity = 35/67 (52.24%), Postives = 49/67 (73.13%), Query Frame = -3
Query: 1437 GYVLPAMLYIQTHRTELRQALASWRSESSSFDPNLLGRLLGLREFYLPMFMTVYGLVAMVAGVGTAL 1637
            GYVLP +LY+++   ELRQA A+W  +SS ++P L  RL   R F +P+FM ++G+VAMVAGV TA+
Sbjct:  391 GYVLPPLLYMKSCGHELRQAKAAWDKDSSEYEPALTERLWASRNFIVPVFMVLFGVVAMVAGVVTAV 457          
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Match: A0A067CL80_SAPPC (Uncharacterized protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CL80_SAPPC)

HSP 1 Score: 67.0 bits (162), Expect = 1.670e-9
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  358 AVGRQKQEQEKSP-----FNRDPIFPPKGSG-TKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKAGKVHYVSEIDKYFKL 582
            AVGRQ  E + +      F+RDPIF  +  G +K  PI VPS +  R +G  H ++  + WFN+  GKV YV + DKYFKL
Sbjct:   61 AVGRQGAELKLAEEGIELFSRDPIFTEESQGNSKENPILVPSFNSHRAIGISHNDSPYIKWFNLHEGKVFYVPDYDKYFKL 141          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7483.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LFS3_ECTSI5.190e-3957.58Cytochrome c oxidase subunit Vb n=2 Tax=Ectocarpus... [more]
A0A6U3QRH7_9STRA4.890e-2362.65Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A7S1XX62_9STRA4.530e-2046.34Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U1NDJ1_9STRA8.020e-1739.84Hypothetical protein n=2 Tax=Fibrocapsa japonica T... [more]
A0A024FVF4_9STRA5.790e-1246.34Uncharacterized protein n=1 Tax=Albugo candida Tax... [more]
A0A1W0A2M6_9STRA2.010e-1148.15Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A485KGU5_9STRA2.750e-1144.44Aste57867_13701 protein n=1 Tax=Aphanomyces stella... [more]
T0PQP9_SAPDV7.930e-1044.44Uncharacterized protein n=2 Tax=Saprolegniaceae Ta... [more]
D8LFS5_ECTSI1.040e-952.24Aa_trans domain-containing protein n=2 Tax=Ectocar... [more]
A0A067CL80_SAPPC1.670e-944.44Uncharacterized protein n=1 Tax=Saprolegnia parasi... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7483contigC-tenellus_contig7483:5055..6699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LFS3
Model size1645
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorymitochondrion
Exons1
Evalue1.8e-44
EggNOG OGs2E9H5@1|root,2SFV0@2759|Eukaryota
Cds size360
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.6494098-UTR-C-tenellus_contig7483:5054..52911680790038.6494098-UTR-C-tenellus_contig7483:5054..5291Choristocarpus tenellus KU2346UTRC-tenellus_contig7483 5055..5291 +
1680790038.6804764-UTR-C-tenellus_contig7483:5651..66991680790038.6804764-UTR-C-tenellus_contig7483:5651..6699Choristocarpus tenellus KU2346UTRC-tenellus_contig7483 5652..6699 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790038.6634748-CDS-C-tenellus_contig7483:5291..56511680790038.6634748-CDS-C-tenellus_contig7483:5291..5651Choristocarpus tenellus KU2346CDSC-tenellus_contig7483 5292..5651 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7483.1.1prot_C-tenellus_contig7483.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7483 5292..5651 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7483.1.1

>prot_C-tenellus_contig7483.1.1 ID=prot_C-tenellus_contig7483.1.1|Name=mRNA_C-tenellus_contig7483.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=120bp
MLSSIVRSVGVAARGARPQTPALLQVWRGMCIDGKIPEGHAVGRQKQEQE
KSPFNRDPIFPPKGSGTKNMPIEVPSQHDERVVGFEHPETHVLLWFNMKA
GKVHYVSEIDKYFKLVPNA*
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mRNA from alignment at C-tenellus_contig7483:5055..6699+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7483.1.1 ID=mRNA_C-tenellus_contig7483.1.1|Name=mRNA_C-tenellus_contig7483.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1645bp|location=Sequence derived from alignment at C-tenellus_contig7483:5055..6699+ (Choristocarpus tenellus KU2346)
CCTGAAGTGAGGTGTAATCGTGGTTGGATGTTGGATGTTATAATGTCGTC TATCAAAATAGACACGAAATATGGGAAAATGGCAGTTTCACGAAGAACAT AAAATTCTGATGTGGGGAGAAGACCCTAACCCTGGACAAGAAACCTACTT AGTAGTGGGCTATAATTGAGTTCGTCTTGTCTAGAACGTGGACGTTTGGG AGGTATCCAAGGCGGGGACTTGCTTTCACAGTGAAATATGTTGTCTTCCA TAGTAAGAAGTGTGGGTGTTGCTGCTCGTGGAGCAAGGCCGCAAACTCCT GCACTGCTGCAGGTATGGCGGGGAATGTGTATCGATGGGAAAATCCCTGA AGGCCACGCAGTGGGACGTCAAAAGCAGGAACAAGAGAAAAGCCCCTTTA ACCGCGACCCCATTTTTCCTCCTAAAGGATCAGGAACCAAGAACATGCCC ATCGAAGTTCCATCTCAGCACGATGAGCGGGTGGTGGGATTCGAGCACCC AGAAACCCATGTTCTTCTCTGGTTTAACATGAAGGCGGGGAAGGTGCACT ATGTTTCTGAGATCGATAAGTACTTCAAGCTTGTTCCCAATGCCTAGTGT ATGCATACACTGGGGTGAGATTGCGGGGCCAGTGAAAGTGAGCCTCATCC ACATTCACTGCCGCTGGCTCTGGTTTATGCCTGGTCCAATATAGGGTGGT AAGAAGGACGACGGTGGGAAAATACTATGCACGAGCTGATCTAAATGCAG ATGCCTACCTATGGAATGATGTTTGGGACTTGGAAAGGATTAGGAGCGCA CAAGGAAGTGGAGATCCTTGGGTCCTTGGAAGAGAATCCCCTTCGATATG CCCGTCAGATGATGTTTGGGGTGGGTTGATCGGGAAGATCTTATATTCTT GCTGTTTTGGACTCTTGTTTGCACGGGGGGGAGGATAAACCAGGTGGCTT CTCTCTGTTTTTATTCATTTTCTCCCCAAGGTTTGTTCAGCTTTGTTCCC CAATGCATGTCTACGCACTAGTGTGCGTGTCTATTCTTGAGAGTTTATTG TTTGGAGGCTCTGTCCAGATGGTTTTCCTGAAGCATTTCGTTCTTGGAGG GAGGAAAGCTTAAACAAAGGGGAAGGAACTTGTAGTTCAGTGAATGTTTG GGATTTGGCATTGCGTGGGGAATTCTTACGGTGACTGCGTGCACATTTTC AGAATGGAATGTACTCGTAATGAGCTTTCAAGATTCATGCAATATCCATT TACCAGCCTTTGAGTCACATAATATTTATAATCTCTTTTTTTTTTAAGGG ATATTTGCTAAACCTACATTACCACCTTCAGTCTCTTTTTACACATGATG CCACCAACACTGGATACATCTTCCTAATTAGTTTTCACCATCACACGACC CAAAAACGTCAAAAACACACCAGTCCTGTTATTTCAAAGAGCAGTGCCCA CCCCTGCAACCATTGCCACTAGCCCATAGACAGTCATAAACATAGGGAGA TAAAATTCACGCAGTCCTAATAGTCGCCCCAAGAGGTTTGGATCAAAACT TGATGATTCACTTCTCCATGATGCCAATGCCTGTCTCAGCTCAGTTCTAT GGGTTTGTATGTAGAGCATGGCAGGTAGGACGTATCCAGTCACCT
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Coding sequence (CDS) from alignment at C-tenellus_contig7483:5055..6699+

>mRNA_C-tenellus_contig7483.1.1 ID=mRNA_C-tenellus_contig7483.1.1|Name=mRNA_C-tenellus_contig7483.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=360bp|location=Sequence derived from alignment at C-tenellus_contig7483:5055..6699+ (Choristocarpus tenellus KU2346)
ATGTTGTCTTCCATAGTAAGAAGTGTGGGTGTTGCTGCTCGTGGAGCAAG
GCCGCAAACTCCTGCACTGCTGCAGGTATGGCGGGGAATGTGTATCGATG
GGAAAATCCCTGAAGGCCACGCAGTGGGACGTCAAAAGCAGGAACAAGAG
AAAAGCCCCTTTAACCGCGACCCCATTTTTCCTCCTAAAGGATCAGGAAC
CAAGAACATGCCCATCGAAGTTCCATCTCAGCACGATGAGCGGGTGGTGG
GATTCGAGCACCCAGAAACCCATGTTCTTCTCTGGTTTAACATGAAGGCG
GGGAAGGTGCACTATGTTTCTGAGATCGATAAGTACTTCAAGCTTGTTCC
CAATGCCTAG
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