mRNA_C-tenellus_contig739.9.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig739.9.1
Unique NamemRNA_C-tenellus_contig739.9.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig739.9.1 vs. uniprot
Match: D8LHA9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHA9_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 1.540e-27
Identity = 45/69 (65.22%), Postives = 55/69 (79.71%), Query Frame = 1 
Query:    1 MTTVLWHKLPFRKFIFHELKRDGCRPFMIGLGVAFFTFGVYPAMGLTDEDRKNSVYYQQRMRTMVYSDH 207
            M  V WHKLP+R+ I HE++RDG +PF IG+G++ F  GV P++G TDEDRKNSVYYQQRMRTM Y DH
Sbjct:    1 MPPVHWHKLPWRQLISHEIRRDGFKPFFIGMGISAFLCGVVPSIGFTDEDRKNSVYYQQRMRTMKYEDH 69
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig739.9.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LHA9_ECTSI1.540e-2765.22Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig739contigC-tenellus_contig739:10836..11622 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LHA9
Model size210
Max annot lvl2759|Eukaryota
Hectar predicted targeting categorysignal anchor
Exons2
Evalue2.52e-28
EggNOG OGs2E2RW@1|root,2S9YQ@2759|Eukaryota
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-24_001210.1
Cds size210
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790033.4792562-CDS-C-tenellus_contig739:10835..109301680790033.4792562-CDS-C-tenellus_contig739:10835..10930Choristocarpus tenellus KU2346CDSC-tenellus_contig739 10836..10930 +
1680790033.4906363-CDS-C-tenellus_contig739:11507..116221680790033.4906363-CDS-C-tenellus_contig739:11507..11622Choristocarpus tenellus KU2346CDSC-tenellus_contig739 11508..11622 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig739.9.1prot_C-tenellus_contig739.9.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig739 10836..11622 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig739.9.1

>prot_C-tenellus_contig739.9.1 ID=prot_C-tenellus_contig739.9.1|Name=mRNA_C-tenellus_contig739.9.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=70bp
MTTVLWHKLPFRKFIFHELKRDGCRPFMIGLGVAFFTFGVYPAMGLTDED
RKNSVYYQQRMRTMVYSDH*
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mRNA from alignment at C-tenellus_contig739:10836..11622+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig739.9.1 ID=mRNA_C-tenellus_contig739.9.1|Name=mRNA_C-tenellus_contig739.9.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=787bp|location=Sequence derived from alignment at C-tenellus_contig739:10836..11622+ (Choristocarpus tenellus KU2346)
ATGACGACCGTCCTGTGGCACAAGCTTCCCTTCAGGAAGTTCATCTTTCA
CGAGCTAAAACGCGATGGATGCAGACCTTTCATGATCGGCCTTGGGTAAG
GTTCAGAGAAGAAAACAAAGGGAGTGGTCGGGGAATAGAGCATAGAGGTC
GAGACAACTGGCCTACCTCCCTCTATTGTTTTGCGGATTGATTTTTGAAA
ACCGCTAGATATGTTATTTACTCAGTCATACTTTGTTGGGGGCTTTGGGA
GAGACGGGAAATGCTGTCAAACCGCGAGGGTATTGGTCGATACTTCTTCC
ACGTTTCAGCCCCATAACAATAGGCAGCTGCCCTGGTCGGGGGGTCTCTT
AGGTCTTGAACCAGCCTACCGCTGGATACTTTTCTCAGTACCGCAGCTTT
CTCATAATTGGCGTAAGGATGTCTTTGAGAGGAAGGAGCTGATGTGTGTT
AGACCAGCCCATTCTCGTTTTCATTGTTTCAAAAAGGAAGATCACACCCC
TGCCCCGAACCGCACCGATCTTATGAACTGGTCGAATCCATGGTCCAGGT
TTTTAGAGTGGATTAAACCCTCAACTTTCCTCACACTGCTATATCTTGTG
ATAAAAAAAAATGTTTTGTCCCTACCCTTAACTCAATTCCCGTGTGCGCC
TCCCCCCCCCCTCCTTCTACAGTGTGGCATTCTTTACGTTCGGCGTATAT
CCCGCAATGGGCTTGACAGATGAAGACCGCAAGAACTCCGTGTACTACCA
ACAGCGCATGCGCACCATGGTCTACTCCGACCACTAG
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Coding sequence (CDS) from alignment at C-tenellus_contig739:10836..11622+

>mRNA_C-tenellus_contig739.9.1 ID=mRNA_C-tenellus_contig739.9.1|Name=mRNA_C-tenellus_contig739.9.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=210bp|location=Sequence derived from alignment at C-tenellus_contig739:10836..11622+ (Choristocarpus tenellus KU2346)
ATGACGACCGTCCTGTGGCACAAGCTTCCCTTCAGGAAGTTCATCTTTCA
CGAGCTAAAACGCGATGGATGCAGACCTTTCATGATCGGCCTTGGTGTGG
CATTCTTTACGTTCGGCGTATATCCCGCAATGGGCTTGACAGATGAAGAC
CGCAAGAACTCCGTGTACTACCAACAGCGCATGCGCACCATGGTCTACTC
CGACCACTAG
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