mRNA_C-tenellus_contig7381.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7381.2.1
Unique NamemRNA_C-tenellus_contig7381.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7381.2.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 158 bits (400), Expect = 9.960e-39
Identity = 75/106 (70.75%), Postives = 88/106 (83.02%), Query Frame = 1 
Query:  568 RTHRPNSAALASMIRGDRRTNIRMDREQYDASQGRLLNLAPEGNEVKDSFSTGCRPDKTGHKEHPFQCTECPSSFPMATQLSHHLERSHDIIRHPSLITPKTSISA 885
            R  RPNSAAL +++R DRRTNIRMDREQ+D +Q RL  LAPEGN+V D+FSTGCRPDKTG K+HPF CT+CP SFPMAT LS HLER+H I +HPSLITP  ++SA
Sbjct:  290 RAARPNSAALVNILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSA 395
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7381.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE9.960e-3970.75C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7381contigC-tenellus_contig7381:3375..5856 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2202
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionC2H2 zinc finger protein
Ec32 orthologEc-21_006030.1
Cds size285
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.957712-UTR-C-tenellus_contig7381:3374..46881680790032.957712-UTR-C-tenellus_contig7381:3374..4688Choristocarpus tenellus KU2346UTRC-tenellus_contig7381 3375..4688 -
1680790032.9951637-UTR-C-tenellus_contig7381:5253..58561680790032.9951637-UTR-C-tenellus_contig7381:5253..5856Choristocarpus tenellus KU2346UTRC-tenellus_contig7381 5254..5856 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790032.9690518-CDS-C-tenellus_contig7381:4688..48571680790032.9690518-CDS-C-tenellus_contig7381:4688..4857Choristocarpus tenellus KU2346CDSC-tenellus_contig7381 4689..4857 -
1680790032.9804754-CDS-C-tenellus_contig7381:5137..52531680790032.9804754-CDS-C-tenellus_contig7381:5137..5253Choristocarpus tenellus KU2346CDSC-tenellus_contig7381 5138..5253 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7381.2.1prot_C-tenellus_contig7381.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7381 4689..5253 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7381.2.1

>prot_C-tenellus_contig7381.2.1 ID=prot_C-tenellus_contig7381.2.1|Name=mRNA_C-tenellus_contig7381.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MIRGDRRTNIRMDREQYDASQGRLLNLAPEGNEVKDSFSTGCRPDKTGHK
EHPFQCTECPSSFPMATQLSHHLERSHDIIRHPSLITPKTSISA*
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mRNA from alignment at C-tenellus_contig7381:3375..5856-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7381.2.1 ID=mRNA_C-tenellus_contig7381.2.1|Name=mRNA_C-tenellus_contig7381.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2482bp|location=Sequence derived from alignment at C-tenellus_contig7381:3375..5856- (Choristocarpus tenellus KU2346)
AGGCATCGTGAGGGGGCAAGGGATGGACGGGGAAGAGTAGCACCCACGGA
AGGATATGAGGAGAGGGGGAGAGGGGGGATAGGAGGAGATAGGGGCAGGG
ATGCAGATTGGGATAGGGGAAGAGATAGGGAGAGGGATCGAGGAAGGTAT
GATTTGAGCACCAGGGATCGGGATCGCGCTAGAGAACGAGAAAGGGACAG
AGGGAGAGACCATAGGATTGATTTGGGACGATCCGATGGGAGGGGTGCTC
GCCGGGATGAGGACCGTGCGAGGGACCGGGAACGTGATAGAGTTAGAGGA
GCGGAGTACCCTCCTCATGGCCGACGTAACTCCGAACGGGGAGGACAGCG
TGACGGGGGTCGAGGCAGGGAAAGGGATCCAGGAACCCGAGATGCGTCAA
ACAGGCGAGACAAGTCATCGGCTACGTCAACGGAGGCGGTAGTGGCGTCT
GGATCCAAGTCGAGAGGTATTTTCTCTTACATTGGGGGTGGAGGGAAGGC
ACAGGAGCCCAGTTCAATCGCGAGGAGTAAGAGCCCAGGCACTACGAATA
AAGACAGGGGCGAATCGCGCACCCACCGACCAAACAGTGCAGCGTTGGCA
TCCATGATCCGTGGAGATAGGAGAACCAACATTAGGATGGACAGGGAGCA
ATACGACGCCTCGCAGGGGCGTTTGCTTAATCTTGCTCCAGAGGGAAATG
AAGTCAAGGATAGTTTCAGGTGGATGCACGAGCAACGATATTCTGCTATT
TTATATTTTAATATCTGTCTCACCTGTTCTCACACCTCTCACACTGAAGT
AAAGGGCAGAACTCTTTTTGTGTACTGAGCAACAGTTGGCCTTGCTCAAT
ATTTGTTGTGCCTATGTAGCATGTGCCAGGTAGTATCATGTCATCTACGA
AGGTTGAATCAACCTTCCGCCCACCCTGTACATTTTTACATACCCTTATG
ACTCCGTTCTCTCCCTTCCCCCCCTTACCCTCCTTCCAATTTCTTGCAGT
ACCGGCTGTCGCCCAGACAAGACAGGTCATAAGGAGCATCCTTTCCAGTG
CACTGAGTGCCCCTCATCCTTCCCCATGGCCACCCAGCTCTCGCACCACC
TAGAACGATCCCACGACATCATCAGGCACCCTTCCCTCATCACACCCAAG
ACATCAATATCTGCCTAGTGTGTCCCGCCGAAGTGTACAGCCTGTCTTCA
TATGCATGTGACATGTACAAGCTCAATATGGTGTAGAAGAGGGCCTGGGT
GGTGGTGGGATAGGGGACTGATGACTCTTAAACCTCATGGATGGAAAGAG
TGACTGTATTCAGCAATACAGTGGTCTCTAAAAGAGAGTCAAGTAACCAA
TCCTGAAGAATATCCCTGATTTTTCTACCTTCAAGATTATTCCTGGCAAG
TGTCAGAGCTAACGTTGTTGAGGCTGCATCCGATCAGTGAGTTTTCCAAT
GGCAAGGGCTTGAGGGTGGTGGCAACAGTCTGGTAGGCAACTTGTATGGG
AGGCTTGGGTCTGGGCACTAGATGAGAAAACGCGTAGCCTGACAACCCAC
TGCACTATTTTCACCCGCTTCTTGGTGGGGAATATTTTTACTTGGAAGTC
TTGTTTAGTGTTTGTGGGAGATGGTGCAGTTGAAAATATACCACAGCAAC
GGATGGGTTGAAGCGTGGTTTGGTTGATATATTTGGATGTTTGGGCAAGG
TGTCACAAATGCACTGATCCAGCTATAGGAGCTGTGCAAGTCTGTGTATC
AAATTGTTTCTCCTTTCTTTGAGAGGTGATATACCCACACAACAGTGTAT
CAGCGAGCAAAGACCTTGTGTACTATTTTGAAGAATTCGTTTTATCAACG
AGTTTCATATGCTGCACATAATATTATGGTAATGGCGTTGGCTATTATAC
AGTCCAAGGTTGGAATCTGTGATGCCATCAATGAATGTGCTTATGTCTGA
TGAAATCTACACATATTACTAAAAGGAGATACTTTGAAGAACATACACCA
TTCTCCATTACATTGCATGTCTTGGGGGGGAAGGGGAGGAAAGTGACAGT
ATCACATTTAATTCAGCATGATCTGTTGCTTGCGCTTGAATCTAACCTAG
ACGCCAGCTACTCAATATGAATAGGCTTGTCCAGTGCAGAACCGGACAAG
TGCATTGCACAGCAAACATTTTTACCCTCAAGTCCTAGGTGAATATTGTG
TTTTGGGGGCATGCCCTTACTGGTCCAGATGGCAGTGTTCCTGTTGGAGT
CCATACTTCATTGATATTTTTAAAAGGCAGCAGTGGCACATAAGATGGAA
TACTGTGCATTTCTGATGTACATTTTAGTTTTACATTTAAGTTCCCCTAC
ATAACACGATTTTGTTGAGTGTCACCCTTCTTAGCCATTGTAAATTGTTT
TCCTCTCCTGTTTCTCTGTGTGTGTTGGCTGTTGTCTCTAGGTACTCCCC
CACACCCAATGCCTCTTTCACCCAAATACCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig7381:3375..5856-

>mRNA_C-tenellus_contig7381.2.1 ID=mRNA_C-tenellus_contig7381.2.1|Name=mRNA_C-tenellus_contig7381.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=285bp|location=Sequence derived from alignment at C-tenellus_contig7381:3375..5856- (Choristocarpus tenellus KU2346)
ATGATCCGTGGAGATAGGAGAACCAACATTAGGATGGACAGGGAGCAATA
CGACGCCTCGCAGGGGCGTTTGCTTAATCTTGCTCCAGAGGGAAATGAAG
TCAAGGATAGTTTCAGTACCGGCTGTCGCCCAGACAAGACAGGTCATAAG
GAGCATCCTTTCCAGTGCACTGAGTGCCCCTCATCCTTCCCCATGGCCAC
CCAGCTCTCGCACCACCTAGAACGATCCCACGACATCATCAGGCACCCTT
CCCTCATCACACCCAAGACATCAATATCTGCCTAG
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