prot_C-tenellus_contig7381.2.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig7381.2.1
Unique Nameprot_C-tenellus_contig7381.2.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length95
Homology
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BLAST of mRNA_C-tenellus_contig7381.2.1 vs. uniprot
Match: A0A6H5KX93_9PHAE (C2H2-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KX93_9PHAE)

HSP 1 Score: 145 bits (365), Expect = 6.400e-40
Identity = 67/94 (71.28%), Postives = 79/94 (84.04%), Query Frame = 0 
Query:    1 MIRGDRRTNIRMDREQYDASQGRLLNLAPEGNEVKDSFSTGCRPDKTGHKEHPFQCTECPSSFPMATQLSHHLERSHDIIRHPSLITPKTSISA 94
            ++R DRRTNIRMDREQ+D +Q RL  LAPEGN+V D+FSTGCRPDKTG K+HPF CT+CP SFPMAT LS HLER+H I +HPSLITP  ++SA
Sbjct:  302 ILRSDRRTNIRMDREQFDGAQTRLRKLAPEGNDVCDNFSTGCRPDKTGKKDHPFVCTQCPMSFPMATLLSDHLERAHGIFKHPSLITPNKTLSA 395
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7381.2.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5KX93_9PHAE6.400e-4071.28C2H2-type domain-containing protein n=2 Tax=Ectoca... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013087Zinc finger C2H2-typePROSITEPS00028ZINC_FINGER_C2H2_1coord: 56..77
IPR013087Zinc finger C2H2-typePROSITEPS50157ZINC_FINGER_C2H2_2coord: 54..77
score: 9.64
IPR036236Zinc finger C2H2 superfamilySUPERFAMILY57667beta-beta-alpha zinc fingerscoord: 49..78

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7381contigC-tenellus_contig7381:4689..5253 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7381.2.1mRNA_C-tenellus_contig7381.2.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig7381 3375..5856 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig7381.2.1 ID=prot_C-tenellus_contig7381.2.1|Name=mRNA_C-tenellus_contig7381.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=95bp
MIRGDRRTNIRMDREQYDASQGRLLNLAPEGNEVKDSFSTGCRPDKTGHK
EHPFQCTECPSSFPMATQLSHHLERSHDIIRHPSLITPKTSISA*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013087Znf_C2H2_type
IPR036236Znf_C2H2_sf