mRNA_C-tenellus_contig7359.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7359.2.1
Unique NamemRNA_C-tenellus_contig7359.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 191 bits (484), Expect = 3.610e-55
Identity = 97/121 (80.17%), Postives = 110/121 (90.91%), Query Frame = 1
Query:    1 QVKFPPVPDEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIV 363
            Q +FPP+PD+PYDLVVLGSGPGGEAAAVQA+RLGA VA+VEIKKSFGGPTGLTSKAVREAAKQI +AV  +GGDRRRQ RRMW LRFPALR++AEVLQAAE+RDRL+KN   L+IG AEI+
Sbjct:   57 QQEFPPLPDKPYDLVVLGSGPGGEAAAVQAARLGASVAVVEIKKSFGGPTGLTSKAVREAAKQINQAVTNVGGDRRRQTRRMWKLRFPALRAQAEVLQAAETRDRLSKNLIDLYIGEAEIL 177          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: W7T4Z3_9STRA (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T4Z3_9STRA)

HSP 1 Score: 169 bits (427), Expect = 1.310e-50
Identity = 85/123 (69.11%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 QVKFPPVPDE-PYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIVQ 366
            Q  FP   D+ PYDL+VLGSGP GE A  +A++LG KVAI+EIKK+FGGPTGLTSKAVREAAK+I+K VDQ+GGDR +QIRR+W  RFPAL+SEAEV QAAE+RDRL KN C L+IG+A +V+
Sbjct:   89 QTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVK 211          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC)

HSP 1 Score: 169 bits (427), Expect = 1.560e-48
Identity = 85/123 (69.11%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 QVKFPPVPDE-PYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIVQ 366
            Q  FP   D+ PYDL+VLGSGP GE A  +A++LG KVAI+EIKK+FGGPTGLTSKAVREAAK+I+K VDQ+GGDR +QIRR+W  RFPAL+SEAEV QAAE+RDRL KN C L+IG+A +V+
Sbjct:   70 QTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVK 192          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 169 bits (427), Expect = 9.510e-47
Identity = 85/123 (69.11%), Postives = 103/123 (83.74%), Query Frame = 1
Query:    1 QVKFPPVPDE-PYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIVQ 366
            Q  FP   D+ PYDL+VLGSGP GE A  +A++LG KVAI+EIKK+FGGPTGLTSKAVREAAK+I+K VDQ+GGDR +QIRR+W  RFPAL+SEAEV QAAE+RDRL KN C L+IG+A +V+
Sbjct:   89 QTAFPEKEDDTPYDLIVLGSGPAGETAGCKAAQLGQKVAIIEIKKAFGGPTGLTSKAVREAAKRILKTVDQVGGDRMKQIRRLWKKRFPALKSEAEVYQAAETRDRLVKNDCHLYIGSALLVK 211          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 154 bits (389), Expect = 1.030e-41
Identity = 77/111 (69.37%), Postives = 92/111 (82.88%), Query Frame = 1
Query:   28 EPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEI 360
            EPYDL+V+G GPGGEAAAV A++LGA VA++E K SFGGPTGLTSKAVREA K+I KA+DQ+GGDRRRQ+R +W  RFP LRSEAEVLQAAESR +L      ++IGAA +
Sbjct:   57 EPYDLLVIGCGPGGEAAAVNAAKLGASVALIEKKSSFGGPTGLTSKAVREATKRICKAIDQVGGDRRRQVRGLWRRRFPVLRSEAEVLQAAESRGKLRDAGVDVYIGAARL 167          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 151 bits (381), Expect = 6.780e-41
Identity = 77/123 (62.60%), Postives = 98/123 (79.67%), Query Frame = 1
Query:    1 QVKFPPVP--DEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIV 363
            Q  FPPVP  DEP+DLVV+GSGPGGEAAA +A+ LGAKVA+VE K +FGGPTGLTSKAVREAA++I KAV+Q+GGD+ +QIR++W   FPA R+EAEV QA E+R R       L++GA +++
Sbjct:   78 QKDFPPVPPDDEPFDLVVVGSGPGGEAAAARAAALGAKVAVVERKAAFGGPTGLTSKAVREAAERIAKAVEQLGGDKVKQIRKLWKRNFPAFRAEAEVFQALETRRRYNAGGVSLYVGACQLL 200          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A836CAQ8_9STRA (Pyr_redox_2 domain-containing protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAQ8_9STRA)

HSP 1 Score: 129 bits (325), Expect = 7.110e-37
Identity = 63/83 (75.90%), Postives = 75/83 (90.36%), Query Frame = 1
Query:    1 QVKFPPVPDEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMW 249
            Q  FP VP++ YDLVVLGSGPGGEA A +A++L A+VA+VEIK++FGGPTGLTSKAVREA KQIV+AVDQ+GGDRRRQIRR+W
Sbjct:    9 QSAFPDVPEDGYDLVVLGSGPGGEAIATRAAQLSARVAVVEIKRAFGGPTGLTSKAVREATKQIVQAVDQVGGDRRRQIRRLW 91          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A7S1NVB4_9EUGL (Hypothetical protein (Fragment) n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S1NVB4_9EUGL)

HSP 1 Score: 134 bits (336), Expect = 8.070e-36
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 QVKFPPVPDEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIV 363
            Q  FP    E YDLVV+G+GPGGEA AV ASR GA+VAI+E +++FGGPTGLTSKAVREAAKQI    D +GG+RR Q++  W   F ALRSEAEV QAAESR RL ++   L+I    I+
Sbjct:  177 QYAFPKAEGE-YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISATCDALGGNRRLQMKMFWQRNFAALRSEAEVAQAAESRGRLQRSGVDLYISDKTIL 296          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 134 bits (336), Expect = 5.610e-34
Identity = 73/121 (60.33%), Postives = 88/121 (72.73%), Query Frame = 1
Query:    1 QVKFPPVPDEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIV 363
            Q  FP    E YDLVV+G+GPGGEA AV ASR GA+VAI+E +++FGGPTGLTSKAVREAAKQI    D +GG+RR Q++  W   F ALRSEAEV QAAESR RL ++   L+I    I+
Sbjct:  177 QYAFPKAEGE-YDLVVVGAGPGGEATAVAASRFGARVAIIESRRAFGGPTGLTSKAVREAAKQISATCDALGGNRRLQMKMFWQRNFAALRSEAEVAQAAESRGRLQRSGVDLYISDKTIL 296          
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Match: A0A7S1U0J3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0J3_9STRA)

HSP 1 Score: 102 bits (255), Expect = 3.180e-23
Identity = 48/83 (57.83%), Postives = 66/83 (79.52%), Query Frame = 1
Query:  115 IVEIKKSFGGPTGLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAAESRDRLAKNQCQLFIGAAEIV 363
            +VE K++FGGPTGLTSKAVREAA+++V+A +Q+GGD+R+Q+RR+W L FP+ +SEAEV QA E+R R       LFIG  +I+
Sbjct:    1 VVERKRAFGGPTGLTSKAVREAAERVVRAAEQLGGDKRKQMRRLWALNFPSFKSEAEVFQALETRRRYLSAGVDLFIGGTQIL 83          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7359.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L0D3_9PHAE3.610e-5580.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
W7T4Z3_9STRA1.310e-5069.11Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
K8YWP5_NANGC1.560e-4869.11Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CSA5_9STRA9.510e-4769.11Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2Y1R6_9STRA1.030e-4169.37Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7R9U251_9STRA6.780e-4162.60Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A836CAQ8_9STRA7.110e-3775.90Pyr_redox_2 domain-containing protein (Fragment) n... [more]
A0A7S1NVB4_9EUGL8.070e-3660.33Hypothetical protein (Fragment) n=1 Tax=Eutreptiel... [more]
A0A6U8N6N8_9EUGL5.610e-3460.33Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S1U0J3_9STRA3.180e-2357.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7359contigC-tenellus_contig7359:2029..3077 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog159749.K0TAU2
PFAMsPyr_redox_2,Pyr_redox_dim
Model size366
Max annot lvl2836|Bacillariophyta
Hectar predicted targeting categoryother localisation
Exons3
Evalue1.23e-09
EggNOG OGsCOG1249@1|root,KOG1335@2759|Eukaryota,2XB34@2836|Bacillariophyta
DescriptionPyridine nucleotide-disulphide oxidoreductase, dimerisation domain
Cds size366
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.9258022-CDS-C-tenellus_contig7359:2028..21001680790031.9258022-CDS-C-tenellus_contig7359:2028..2100Choristocarpus tenellus KU2346CDSC-tenellus_contig7359 2029..2100 -
1680790031.9362683-CDS-C-tenellus_contig7359:2628..27121680790031.9362683-CDS-C-tenellus_contig7359:2628..2712Choristocarpus tenellus KU2346CDSC-tenellus_contig7359 2629..2712 -
1680790031.9509225-CDS-C-tenellus_contig7359:2867..30771680790031.9509225-CDS-C-tenellus_contig7359:2867..3077Choristocarpus tenellus KU2346CDSC-tenellus_contig7359 2868..3077 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7359.2.1prot_C-tenellus_contig7359.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7359 2029..3077 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7359.2.1

>prot_C-tenellus_contig7359.2.1 ID=prot_C-tenellus_contig7359.2.1|Name=mRNA_C-tenellus_contig7359.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=122bp
QVKFPPVPDEPYDLVVLGSGPGGEAAAVQASRLGAKVAIVEIKKSFGGPT
GLTSKAVREAAKQIVKAVDQIGGDRRRQIRRMWTLRFPALRSEAEVLQAA
ESRDRLAKNQCQLFIGAAEIVQ
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mRNA from alignment at C-tenellus_contig7359:2029..3077-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7359.2.1 ID=mRNA_C-tenellus_contig7359.2.1|Name=mRNA_C-tenellus_contig7359.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1049bp|location=Sequence derived from alignment at C-tenellus_contig7359:2029..3077- (Choristocarpus tenellus KU2346)
CAGGTGAAGTTCCCACCGGTCCCTGACGAGCCCTATGACCTTGTGGTTCT AGGGTCTGGGCCGGGGGGGGAGGCTGCGGCAGTGCAAGCCTCAAGACTGG GCGCGAAAGTCGCAATTGTGGAGATCAAAAAGAGCTTTGGGGGCCCAACA GGGCTGACGTCGAAGGCTGTGCGTGAGGCTGCTAAGCAGATAGTCAAGGC AGTGGACCAGGTGATTGTACCATGTGCTATACTGCAGTATAGTTTACAGT TACGCGCATGTCCAGCGGTTCCAACCAAGGACACAGCTTCTATTCCCATA TCCCAACTGTTGTTGAGAAACGAGGAATGTTTGCATGTCTCCCCTTGCAC AATTCTCCTCTGAAGATCGGTGGAGACAGGCGAAGACAAATCCGGCGAAT GTGGACTCTTCGCTTCCCGGCACTGCGTAGTGAGGCTGAAGTTTTGCAGG TGACATTTACCGCAAAGTAACAATCCCACTACTGCAGTAGCAAAACCAAG AAACATTTACCTGTAGGCACCCACAATTATCACTTATGATATGCCCCATG AGATACTCTCTGCTTGATAATGTGATCGGGGAGGGACAATGAATGAGCAA GTGTGCTGACCTGGGATCATGGAACTAGGGAGTACTCCAGTCCCCACGAC AGTCCTCTCCATCGCACTTCCTTCTGTAGCTTAGGAACTACATCGGTTGG CCTCTTGGAAGCATTAGTTATGCATGGTCTGACTCCTGACAGAGTCGATG TGTGCTCCATGGAAGCAAAGAGACGACCAACGATATGGCTGGTGTGTATT TTTGTGCCTCATCATCTCTTACAGTTACTGTGCTTGGAAATGGGACTTCT ACTCATGCGGGACTGGCCACCCCTCAACTTTTCCTATTTCTCTGAAGCAC CCCACTTAACTCTAACAGACGTCTGGCCTCTTGTCTCGATTGCCGTGGAC ACGGTTAAATATATTTCCACAAGTAAGGCTGCAGAGTCACGCGATCGTTT GGCAAAGAACCAGTGCCAACTGTTCATTGGAGCAGCAGAGATAGTACAA
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Coding sequence (CDS) from alignment at C-tenellus_contig7359:2029..3077-

>mRNA_C-tenellus_contig7359.2.1 ID=mRNA_C-tenellus_contig7359.2.1|Name=mRNA_C-tenellus_contig7359.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=366bp|location=Sequence derived from alignment at C-tenellus_contig7359:2029..3077- (Choristocarpus tenellus KU2346)
CAGGTGAAGTTCCCACCGGTCCCTGACGAGCCCTATGACCTTGTGGTTCT
AGGGTCTGGGCCGGGGGGGGAGGCTGCGGCAGTGCAAGCCTCAAGACTGG
GCGCGAAAGTCGCAATTGTGGAGATCAAAAAGAGCTTTGGGGGCCCAACA
GGGCTGACGTCGAAGGCTGTGCGTGAGGCTGCTAAGCAGATAGTCAAGGC
AGTGGACCAGATCGGTGGAGACAGGCGAAGACAAATCCGGCGAATGTGGA
CTCTTCGCTTCCCGGCACTGCGTAGTGAGGCTGAAGTTTTGCAGGCTGCA
GAGTCACGCGATCGTTTGGCAAAGAACCAGTGCCAACTGTTCATTGGAGC
AGCAGAGATAGTACAA
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