mRNA_C-tenellus_contig7359.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7359.1.1
Unique NamemRNA_C-tenellus_contig7359.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: D8LER9_ECTSI (Soluble pyridine nucleotide transhydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LER9_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.100e-25
Identity = 53/67 (79.10%), Postives = 60/67 (89.55%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            RPNRP  + SG+ LPF KG+VVDATEMGT+T+LPNA AIIGGGVIAVEYANVLA LGVGVSL+CK+E
Sbjct:   80 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYANVLAGLGVGVSLLCKDE 146          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A6H5L0D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0D3_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 2.180e-24
Identity = 52/67 (77.61%), Postives = 59/67 (88.06%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            RPNRP  + SG+ LPF KG+VVDATEMGT+T+LPNA AIIGGGVIAVEYA VLA LGVGVSL+CK+E
Sbjct:  217 RPNRPPKMRSGSRLPFMKGVVVDATEMGTITDLPNACAIIGGGVIAVEYATVLAGLGVGVSLLCKDE 283          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A836CA28_9STRA (Soluble pyridine nucleotide transhydogenase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CA28_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 7.050e-20
Identity = 44/67 (65.67%), Postives = 56/67 (83.58%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            R +RP  +  G ++PF KGIVVD+TEMG +  LPNAVAI+GGGVIAVEYA VLA+LGVGVSL+C+++
Sbjct:   72 RAHRPKEIAPGVAIPFTKGIVVDSTEMGQIAELPNAVAILGGGVIAVEYATVLARLGVGVSLLCQDK 138          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A7R9U251_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U251_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 1.130e-16
Identity = 43/67 (64.18%), Postives = 52/67 (77.61%), Query Frame = 1
Query:    1 RPNRPATLPS-GASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKE 198
            RP RPATL +  A +P+  G+V+D+T MG L NLP A A+ GGGVIAVEYA VLA+LGVGVSL+C E
Sbjct:  234 RPARPATLRNTDAPIPWTPGVVMDSTGMGNLANLPKAAAVFGGGVIAVEYATVLARLGVGVSLLCSE 300          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: K8YWP5_NANGC (Soluble pyridine nucleotide transhydrogenase (Fragment) n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=K8YWP5_NANGC)

HSP 1 Score: 72.4 bits (176), Expect = 2.590e-13
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            RP+RP  L  G  +P+   +V+DAT++  L  LP+++A+IGGGVI+VEYA V A +G+  SL+C+EE
Sbjct:  228 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREE 294          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A4D9CSA5_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSA5_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 2.810e-13
Identity = 33/67 (49.25%), Postives = 49/67 (73.13%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            RP+RP  L  G  +P+   +V+DAT++  L  LP+++A+IGGGVI+VEYA V A +G+  SL+C+EE
Sbjct:  247 RPSRPKELRPGVPIPYTSRLVIDATQIANLKELPDSLAVIGGGVISVEYATVFAAMGLPTSLLCREE 313          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A7S2Y1R6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2Y1R6_9STRA)

HSP 1 Score: 71.6 bits (174), Expect = 5.230e-13
Identity = 39/70 (55.71%), Postives = 52/70 (74.29%), Query Frame = 1
Query:    1 RPNRPATLP-SGASLPFKK--GIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            R N PA LP +   +PF +  G +VDAT+   ++ LPN++ IIGGGVIAVEYA V A+LGVGV+L+CKE+
Sbjct:  201 RANIPAVLPGTNVRIPFLESGGRIVDATKASGMSELPNSILIIGGGVIAVEYATVFAELGVGVTLLCKEK 270          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: H6WB84_VAULI (Soluble pyridine nucleotide transhydogenase n=1 Tax=Vaucheria litorea TaxID=109269 RepID=H6WB84_VAULI)

HSP 1 Score: 70.9 bits (172), Expect = 9.460e-13
Identity = 35/67 (52.24%), Postives = 47/67 (70.15%), Query Frame = 1
Query:    1 RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            R +RP  +    S+ F   +++D+TEM  + +LP  V IIGGGVIAVEYA V A+LGVGVSLIC ++
Sbjct:   60 RAHRPNKIYKNISIEFVPNVIIDSTEMSQIVDLPRTVGIIGGGVIAVEYATVFAKLGVGVSLICPKK 126          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A7S1U0J3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U0J3_9STRA)

HSP 1 Score: 61.6 bits (148), Expect = 1.740e-9
Identity = 31/54 (57.41%), Postives = 42/54 (77.78%), Query Frame = 1
Query:   40 LPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            +P++   V D++ M  ++ LP AVAIIG GVIA+EYA VLA+LGVGVSL+C E+
Sbjct:  130 VPWEAKGVTDSSGMSNISELPRAVAIIGSGVIALEYATVLARLGVGVSLLCAED 183          
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Match: A0A6U8N6N8_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A6U8N6N8_9EUGL)

HSP 1 Score: 55.5 bits (132), Expect = 2.640e-7
Identity = 29/57 (50.88%), Postives = 41/57 (71.93%), Query Frame = 1
Query:   37 SLPFKKGIVVDATEM-GTLT-NLPNAVAIIGGGVIAVEYANVLAQLGVGVSLICKEE 201
            ++PF K  +VD+TE+  TL   LP    IIGGG+IAVEYA VLA +GVG+++ C ++
Sbjct:  342 TVPFMKDRIVDSTEICSTLAMGLPKTCGIIGGGIIAVEYATVLASVGVGITIFCNKD 398          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7359.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LER9_ECTSI1.100e-2579.10Soluble pyridine nucleotide transhydrogenase n=1 T... [more]
A0A6H5L0D3_9PHAE2.180e-2477.61Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CA28_9STRA7.050e-2065.67Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
A0A7R9U251_9STRA1.130e-1664.18Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
K8YWP5_NANGC2.590e-1349.25Soluble pyridine nucleotide transhydrogenase (Frag... [more]
A0A4D9CSA5_9STRA2.810e-1349.25Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S2Y1R6_9STRA5.230e-1355.71Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
H6WB84_VAULI9.460e-1352.24Soluble pyridine nucleotide transhydogenase n=1 Ta... [more]
A0A7S1U0J3_9STRA1.740e-957.41Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A6U8N6N8_9EUGL2.640e-750.88Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7359contigC-tenellus_contig7359:284..484 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LER9
PFAMsPyr_redox_2,Pyr_redox_dim
Model size201
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Evalue1.8e-26
EggNOG OGsCOG1249@1|root,KOG0405@2759|Eukaryota
Descriptionglutathione-disulfide reductase activity
Cds size201
COG categoryC
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790031.8933978-CDS-C-tenellus_contig7359:283..4841680790031.8933978-CDS-C-tenellus_contig7359:283..484Choristocarpus tenellus KU2346CDSC-tenellus_contig7359 284..484 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7359.1.1prot_C-tenellus_contig7359.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7359 284..484 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7359.1.1

>prot_C-tenellus_contig7359.1.1 ID=prot_C-tenellus_contig7359.1.1|Name=mRNA_C-tenellus_contig7359.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=67bp
RPNRPATLPSGASLPFKKGIVVDATEMGTLTNLPNAVAIIGGGVIAVEYA
NVLAQLGVGVSLICKEE
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mRNA from alignment at C-tenellus_contig7359:284..484-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7359.1.1 ID=mRNA_C-tenellus_contig7359.1.1|Name=mRNA_C-tenellus_contig7359.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=201bp|location=Sequence derived from alignment at C-tenellus_contig7359:284..484- (Choristocarpus tenellus KU2346)
AGGCCGAACCGGCCAGCCACTCTCCCGTCCGGGGCAAGCCTCCCTTTCAA GAAGGGCATTGTTGTAGATGCCACAGAGATGGGTACCTTGACCAATCTGC CCAATGCTGTGGCCATCATTGGTGGGGGTGTCATCGCAGTGGAGTATGCC AATGTCCTGGCACAGCTGGGCGTTGGTGTGTCCCTAATCTGCAAGGAGGA G
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Coding sequence (CDS) from alignment at C-tenellus_contig7359:284..484-

>mRNA_C-tenellus_contig7359.1.1 ID=mRNA_C-tenellus_contig7359.1.1|Name=mRNA_C-tenellus_contig7359.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=201bp|location=Sequence derived from alignment at C-tenellus_contig7359:284..484- (Choristocarpus tenellus KU2346)
AGGCCGAACCGGCCAGCCACTCTCCCGTCCGGGGCAAGCCTCCCTTTCAA
GAAGGGCATTGTTGTAGATGCCACAGAGATGGGTACCTTGACCAATCTGC
CCAATGCTGTGGCCATCATTGGTGGGGGTGTCATCGCAGTGGAGTATGCC
AATGTCCTGGCACAGCTGGGCGTTGGTGTGTCCCTAATCTGCAAGGAGGA
G
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