mRNA_C-tenellus_contig7319.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7319.2.1
Unique NamemRNA_C-tenellus_contig7319.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A8J4WZ46_CLAMG (COP9 signalosome complex subunit 5 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4WZ46_CLAMG)

HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11
Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276
            RFL GN I+ V GLE    L+ELH+ GQ LP G  L FD  ++HG+  SL VLN ++N +  D++  L  L++L  L  A+NQL ++
Sbjct:  243 RFLGGNNITLVEGLEQLRELKELHIEGQRLPPGEKLLFDPRTLHGLSGSLCVLNINNNNI--DEILDLAILNKLTHLYAADNQLDDI 327          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A8C2P931_CAPHI (Protein phosphatase 1 regulatory subunit 42 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2P931_CAPHI)

HSP 1 Score: 67.4 bits (163), Expect = 2.500e-11
Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GLE  E L ELHV  Q LP+G  L FD  ++H +  SL +LN S+N +  DD+  L  L  L +L  A+NQL
Sbjct:   86 RYLGGNYIAVIEGLEGVEGLRELHVESQRLPLGEKLVFDPRTLHSLAKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 167          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A498MZ60_LABRO (COP9 signalosome complex subunit 5 n=2 Tax=Cyprinidae TaxID=7953 RepID=A0A498MZ60_LABRO)

HSP 1 Score: 67.0 bits (162), Expect = 5.990e-11
Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276
            RFL GN I+ V GLE  + L+ELHV GQ LP G  L FD  SI  + ++L +LN S N +  D++  L  L +L  L   +NQL++M
Sbjct:  305 RFLGGNSITVVEGLEELKNLKELHVEGQKLPCGEKLVFDPRSISSLSEALCILNISKNNI--DEIWDLAPLRKLSHLYATDNQLRDM 389          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000E1C8F85 (protein phosphatase 1 regulatory subunit 42 isoform X9 n=1 Tax=Apteryx rowi TaxID=308060 RepID=UPI000E1C8F85)

HSP 1 Score: 65.5 bits (158), Expect = 1.080e-10
Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1
Query:    7 LLFRFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276
            L+ R+L GN I+ V GL+  E + ELH+  QHLP+G  L FD  S+  +  SL VLN S+N +  D++  L  L  +  L+  +NQL+ M
Sbjct:   12 LVSRYLGGNCIAVVEGLDKLEEIRELHIESQHLPLGEKLLFDPRSLTSLAKSLSVLNISNNNI--DELAELAVLENISHLTAVDNQLQYM 99          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI00097BCC98 (protein phosphatase 1 regulatory subunit 42 isoform 2 n=2 Tax=Homininae TaxID=207598 RepID=UPI00097BCC98)

HSP 1 Score: 61.2 bits (147), Expect = 3.270e-10
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GLE    L ELHV  Q LP+G  L FD  ++H +  SL +LN S+N +  DD+  L  L  L +L   +NQL
Sbjct:   16 RYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRTLHSLAKSLCILNISNNNI--DDITDLELLENLNQLIAVDNQL 97          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A4W2GIK1_BOBOX (Protein phosphatase 1 regulatory subunit 42 n=4 Tax=Bos TaxID=9903 RepID=A0A4W2GIK1_BOBOX)

HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GL     L ELHV  Q LP+G  L FD  ++H +  SL +LN S+N +  DD+  L  L  L +L  A+NQL
Sbjct:   89 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLVFDPRTLHSLAKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 170          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000387D91B (protein phosphatase 1 regulatory subunit 42 isoform 4 n=3 Tax=Homininae TaxID=207598 RepID=UPI000387D91B)

HSP 1 Score: 61.2 bits (147), Expect = 2.860e-9
Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GLE    L ELHV  Q LP+G  L FD  ++H +  SL +LN S+N +  DD+  L  L  L +L   +NQL
Sbjct:   16 RYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRTLHSLAKSLCILNISNNNI--DDITDLELLENLNQLIAVDNQL 97          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI00168D0152 (protein phosphatase 1 regulatory subunit 42 isoform X2 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=UPI00168D0152)

HSP 1 Score: 61.2 bits (147), Expect = 5.640e-9
Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GL     L ELHV  Q LP+G  L FD  ++H +  SL +LN S+N +  DD+  L  L  L +L   +NQL
Sbjct:   79 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLLFDPRTLHSLAKSLYILNISNNNI--DDIRDLEILENLNQLIAVDNQL 160          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI001E1B80C0 (protein phosphatase 1 regulatory subunit 42 isoform X3 n=1 Tax=Bubalus bubalis TaxID=89462 RepID=UPI001E1B80C0)

HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7
Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGI-----KDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267
            R+L GN I+ + GL     L ELHV  Q LP+G  L FD  ++H +     + SL +LN S+N +  DD+  L  L  L +L  A+NQL
Sbjct:   89 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLVFDPRTLHSLAFLFLQKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 175          
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000C9E5917 (protein phosphatase 1 regulatory subunit 42 isoform X5 n=1 Tax=Equus caballus TaxID=9796 RepID=UPI000C9E5917)

HSP 1 Score: 55.8 bits (133), Expect = 2.810e-7
Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1
Query:   16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGI-----KDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQ 264
            R+L GN I+ + GL     L ELHV  Q LP+G  L FD  ++H +     + SL  LN S+N +  DD+  L  L  L +L   NNQ
Sbjct:   43 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLLFDPRTLHSLALFFLQKSLSTLNISNNNI--DDIRDLEILENLNQLIAVNNQ 128          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 12
Match NameE-valueIdentityDescription
A0A8J4WZ46_CLAMG1.660e-1144.83COP9 signalosome complex subunit 5 (Fragment) n=1 ... [more]
A0A8C2P931_CAPHI2.500e-1145.24Protein phosphatase 1 regulatory subunit 42 n=1 Ta... [more]
A0A498MZ60_LABRO5.990e-1144.83COP9 signalosome complex subunit 5 n=2 Tax=Cyprini... [more]
UPI000E1C8F851.080e-1041.11protein phosphatase 1 regulatory subunit 42 isofor... [more]
UPI00097BCC983.270e-1042.86protein phosphatase 1 regulatory subunit 42 isofor... [more]
A0A4W2GIK1_BOBOX1.070e-942.86Protein phosphatase 1 regulatory subunit 42 n=4 Ta... [more]
UPI000387D91B2.860e-942.86protein phosphatase 1 regulatory subunit 42 isofor... [more]
UPI00168D01525.640e-941.67protein phosphatase 1 regulatory subunit 42 isofor... [more]
UPI001E1B80C01.180e-740.45protein phosphatase 1 regulatory subunit 42 isofor... [more]
UPI000C9E59172.810e-739.77protein phosphatase 1 regulatory subunit 42 isofor... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7319contigC-tenellus_contig7319:4912..5850 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Seed ortholog2880.D7FMS8
Model size276
Max annot lvl2759|Eukaryota
KEGG koko:K17579
Hectar predicted targeting categoryother localisation
Exons2
Evalue7.86e-08
EggNOG OGs2CZ6V@1|root,2S8SX@2759|Eukaryota
Ec32 ortholog descriptionHypothetical leucine rich repeat protein
Ec32 orthologEc-21_000290.1
Cds size276
BRITEko00000,ko01009,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790028.788713-CDS-C-tenellus_contig7319:4911..50311680790028.788713-CDS-C-tenellus_contig7319:4911..5031Choristocarpus tenellus KU2346CDSC-tenellus_contig7319 4912..5031 -
1680790028.8010416-CDS-C-tenellus_contig7319:5694..58501680790028.8010416-CDS-C-tenellus_contig7319:5694..5850Choristocarpus tenellus KU2346CDSC-tenellus_contig7319 5695..5850 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7319.2.1prot_C-tenellus_contig7319.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7319 4912..5850 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7319.2.1

>prot_C-tenellus_contig7319.2.1 ID=prot_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=92bp
MNLLFRFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHG
IKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM
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mRNA from alignment at C-tenellus_contig7319:4912..5850-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7319.2.1 ID=mRNA_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=939bp|location=Sequence derived from alignment at C-tenellus_contig7319:4912..5850- (Choristocarpus tenellus KU2346)
ATGAATCTTTTATTCAGATTCCTCAACGGAAACAAAATCTCATGGGTGTG CGGTCTCGAGTCGGCAGAATGCCTGGAGGAACTTCATGTGGCAGGCCAGC ATCTCCCAGTGGGAACAAATCTAAGATTTGATGAGGCATCAATCCACGGG ATAAAGGTGTGAAAAAGGGTTGAAAAGCAGCAATTGACATTCAATTTTTT GTTCACTTAATTTAGCACAACATAGCAAGGACAAGGAGAAACAGGTTCAA TTCTTTTTTTTCCCTATGGTTAAAAAACGCAATGTACCTGTGCTTTCTGA GGATATTTCATTCTCGGATTAGGGTTAGATTTAGGGATAGGAGTCGAGCT CAACCAAGAGACTCCTGAAGATAAGGTTTGTGTGTGTTCATAAGTATTGA GTTAAGGTTATGGTTAGGGTTAAAGTTAGAGTTAGGGGGTGAGGGCTCAT AGTATCTGGGGTGTGTGGCGACTGTCCATTCAGGGCTTGTTTCTCCATGT CACATTTCTTGTGTGATTTGGTTGCATGCATCGGATGAATAATGTAAGTG CACTTTTCCTGGTCAGGTTTCGAATGGACAACCTGGTGTAGACCCCCCCC CAGATACTTTGAGCCTTAGCGATAGGGTTAAGGATTAAAATAACTTCATA ACTTACTCCTTGGGGGTGATGTTGTCAGCCCCCCTCCCCTAGCCTTCCAG GCACCTAACACAATCTTCGATATTAGATCGACTAGGATGTTTTTATGATA CATCCAGTGTCTGCATATAGAATAAATACATAAATATAAAAGCATAACCC TAACTCTAAACTTCAACAGGATTCACTGCGGGTGCTTAATGCATCTGACA ATGGCATGACAGAGGACGATATGGAGACTCTGCTGGACCTTCACAGACTG CAGAAGCTCTCCCTAGCCAATAATCAACTCAAGAATATG
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Coding sequence (CDS) from alignment at C-tenellus_contig7319:4912..5850-

>mRNA_C-tenellus_contig7319.2.1 ID=mRNA_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=276bp|location=Sequence derived from alignment at C-tenellus_contig7319:4912..5850- (Choristocarpus tenellus KU2346)
ATGAATCTTTTATTCAGATTCCTCAACGGAAACAAAATCTCATGGGTGTG
CGGTCTCGAGTCGGCAGAATGCCTGGAGGAACTTCATGTGGCAGGCCAGC
ATCTCCCAGTGGGAACAAATCTAAGATTTGATGAGGCATCAATCCACGGG
ATAAAGGATTCACTGCGGGTGCTTAATGCATCTGACAATGGCATGACAGA
GGACGATATGGAGACTCTGCTGGACCTTCACAGACTGCAGAAGCTCTCCC
TAGCCAATAATCAACTCAAGAATATG
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