mRNA_C-tenellus_contig7319.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A8J4WZ46_CLAMG (COP9 signalosome complex subunit 5 (Fragment) n=1 Tax=Clarias magur TaxID=1594786 RepID=A0A8J4WZ46_CLAMG) HSP 1 Score: 68.6 bits (166), Expect = 1.660e-11 Identity = 39/87 (44.83%), Postives = 55/87 (63.22%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276 RFL GN I+ V GLE L+ELH+ GQ LP G L FD ++HG+ SL VLN ++N + D++ L L++L L A+NQL ++ Sbjct: 243 RFLGGNNITLVEGLEQLRELKELHIEGQRLPPGEKLLFDPRTLHGLSGSLCVLNINNNNI--DEILDLAILNKLTHLYAADNQLDDI 327
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A8C2P931_CAPHI (Protein phosphatase 1 regulatory subunit 42 n=1 Tax=Capra hircus TaxID=9925 RepID=A0A8C2P931_CAPHI) HSP 1 Score: 67.4 bits (163), Expect = 2.500e-11 Identity = 38/84 (45.24%), Postives = 51/84 (60.71%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GLE E L ELHV Q LP+G L FD ++H + SL +LN S+N + DD+ L L L +L A+NQL Sbjct: 86 RYLGGNYIAVIEGLEGVEGLRELHVESQRLPLGEKLVFDPRTLHSLAKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 167
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A498MZ60_LABRO (COP9 signalosome complex subunit 5 n=2 Tax=Cyprinidae TaxID=7953 RepID=A0A498MZ60_LABRO) HSP 1 Score: 67.0 bits (162), Expect = 5.990e-11 Identity = 39/87 (44.83%), Postives = 53/87 (60.92%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276 RFL GN I+ V GLE + L+ELHV GQ LP G L FD SI + ++L +LN S N + D++ L L +L L +NQL++M Sbjct: 305 RFLGGNSITVVEGLEELKNLKELHVEGQKLPCGEKLVFDPRSISSLSEALCILNISKNNI--DEIWDLAPLRKLSHLYATDNQLRDM 389
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000E1C8F85 (protein phosphatase 1 regulatory subunit 42 isoform X9 n=1 Tax=Apteryx rowi TaxID=308060 RepID=UPI000E1C8F85) HSP 1 Score: 65.5 bits (158), Expect = 1.080e-10 Identity = 37/90 (41.11%), Postives = 54/90 (60.00%), Query Frame = 1 Query: 7 LLFRFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQLKNM 276 L+ R+L GN I+ V GL+ E + ELH+ QHLP+G L FD S+ + SL VLN S+N + D++ L L + L+ +NQL+ M Sbjct: 12 LVSRYLGGNCIAVVEGLDKLEEIRELHIESQHLPLGEKLLFDPRSLTSLAKSLSVLNISNNNI--DELAELAVLENISHLTAVDNQLQYM 99
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI00097BCC98 (protein phosphatase 1 regulatory subunit 42 isoform 2 n=2 Tax=Homininae TaxID=207598 RepID=UPI00097BCC98) HSP 1 Score: 61.2 bits (147), Expect = 3.270e-10 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GLE L ELHV Q LP+G L FD ++H + SL +LN S+N + DD+ L L L +L +NQL Sbjct: 16 RYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRTLHSLAKSLCILNISNNNI--DDITDLELLENLNQLIAVDNQL 97
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: A0A4W2GIK1_BOBOX (Protein phosphatase 1 regulatory subunit 42 n=4 Tax=Bos TaxID=9903 RepID=A0A4W2GIK1_BOBOX) HSP 1 Score: 62.8 bits (151), Expect = 1.070e-9 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GL L ELHV Q LP+G L FD ++H + SL +LN S+N + DD+ L L L +L A+NQL Sbjct: 89 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLVFDPRTLHSLAKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 170
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000387D91B (protein phosphatase 1 regulatory subunit 42 isoform 4 n=3 Tax=Homininae TaxID=207598 RepID=UPI000387D91B) HSP 1 Score: 61.2 bits (147), Expect = 2.860e-9 Identity = 36/84 (42.86%), Postives = 49/84 (58.33%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GLE L ELHV Q LP+G L FD ++H + SL +LN S+N + DD+ L L L +L +NQL Sbjct: 16 RYLGGNYIAVIEGLEGLGELRELHVENQRLPLGEKLLFDPRTLHSLAKSLCILNISNNNI--DDITDLELLENLNQLIAVDNQL 97
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI00168D0152 (protein phosphatase 1 regulatory subunit 42 isoform X2 n=1 Tax=Rousettus aegyptiacus TaxID=9407 RepID=UPI00168D0152) HSP 1 Score: 61.2 bits (147), Expect = 5.640e-9 Identity = 35/84 (41.67%), Postives = 48/84 (57.14%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGIKDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GL L ELHV Q LP+G L FD ++H + SL +LN S+N + DD+ L L L +L +NQL Sbjct: 79 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLLFDPRTLHSLAKSLYILNISNNNI--DDIRDLEILENLNQLIAVDNQL 160
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI001E1B80C0 (protein phosphatase 1 regulatory subunit 42 isoform X3 n=1 Tax=Bubalus bubalis TaxID=89462 RepID=UPI001E1B80C0) HSP 1 Score: 57.4 bits (137), Expect = 1.180e-7 Identity = 36/89 (40.45%), Postives = 50/89 (56.18%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGI-----KDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQL 267 R+L GN I+ + GL L ELHV Q LP+G L FD ++H + + SL +LN S+N + DD+ L L L +L A+NQL Sbjct: 89 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLVFDPRTLHSLAFLFLQKSLSILNISNNNI--DDIRDLEILENLNQLIAADNQL 175
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Match: UPI000C9E5917 (protein phosphatase 1 regulatory subunit 42 isoform X5 n=1 Tax=Equus caballus TaxID=9796 RepID=UPI000C9E5917) HSP 1 Score: 55.8 bits (133), Expect = 2.810e-7 Identity = 35/88 (39.77%), Postives = 47/88 (53.41%), Query Frame = 1 Query: 16 RFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGI-----KDSLRVLNASDNGMTEDDMETLLDLHRLQKLSLANNQ 264 R+L GN I+ + GL L ELHV Q LP+G L FD ++H + + SL LN S+N + DD+ L L L +L NNQ Sbjct: 43 RYLGGNYIAVIEGLXXXXXLRELHVESQRLPLGEKLLFDPRTLHSLALFFLQKSLSTLNISNNNI--DDIRDLEILENLNQLIAVNNQ 128 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7319.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 12
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7319.2.1 >prot_C-tenellus_contig7319.2.1 ID=prot_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=92bp MNLLFRFLNGNKISWVCGLESAECLEELHVAGQHLPVGTNLRFDEASIHGback to top mRNA from alignment at C-tenellus_contig7319:4912..5850- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig7319.2.1 ID=mRNA_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=939bp|location=Sequence derived from alignment at C-tenellus_contig7319:4912..5850- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig7319:4912..5850- >mRNA_C-tenellus_contig7319.2.1 ID=mRNA_C-tenellus_contig7319.2.1|Name=mRNA_C-tenellus_contig7319.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=276bp|location=Sequence derived from alignment at C-tenellus_contig7319:4912..5850- (Choristocarpus tenellus KU2346)back to top |