mRNA_C-tenellus_contig731.8.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig731.8.1
Unique NamemRNA_C-tenellus_contig731.8.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig731.8.1 vs. uniprot
Match: A0A6H5JB40_9PHAE (Ion_trans domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JB40_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 2.170e-9
Identity = 60/223 (26.91%), Postives = 96/223 (43.05%), Query Frame = 3 
Query:  837 RNS*RPFSKSKTWQIVNGTLGTLFFSFSMGLLALILSSLLWVISTPVLVWDHLQKQERSCFGRSSIRQGLTFELIT-----AIFRVIVWMMASII-CTAAMGIVMPILYT------LLWLRGVLSIFQWYNWSSTRNMSSTEGGPLGTDC-----AREMWSDWD-------KAKNISARCFLKETSQFDIRPFLQRTTGLKLENLLECIEDPFKVKDGNLWED 1433
            + S  P + +  W   +G L  L F+ +MGL+A+ L++LLWV+S P + W  +              +  TF  +        FR  +W+   II C  A+G  + +         +LWLRGV ++F+W +W  +       G      C      +E  S+W        KA+N   R    ++  F + P LQ TTGL +E      ++ F  K+   W D
Sbjct: 1359 KESFAPITYTYGWHTFDGMLQRLLFASTMGLVAVTLNALLWVLSLPWVAWRIVCWVLYKVVETGDPDEVETFLSVRLRDKKGKFRAFLWVFLGIIACVFALGFAVALCGVCVAGSFVLWLRGVCNVFEWAHWRLSEEGRFVSGETKKGTCPTAMPGQERGSNWRHAWKYVAKARNFRIR-HEHDSEHFHVAPLLQATTGLDMEQFCLLAKEKFNDKNQEHWAD 1580
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BLAST of mRNA_C-tenellus_contig731.8.1 vs. uniprot
Match: D7FNX2_ECTSI (Ion_trans domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FNX2_ECTSI)

HSP 1 Score: 67.4 bits (163), Expect = 6.460e-8
Identity = 57/231 (24.68%), Postives = 98/231 (42.42%), Query Frame = 3 
Query:  852 PFSKSKTWQIVNGTLGTLFFSFSMGLLALILSSLLWVISTPVLVW--------------DHLQKQERSCFGRSSIRQGLTFELITAIFRVIVWMMASIICTAAMGIVMPILYTLLWLRGVLSIFQWYNWSSTRNMSSTEGGPLGTDCA------------REMWSDWDKAKNISARCFLKETSQFDIRPFLQRTTGLKLENLLECIEDPF----KVKDGNLWEDEGKNQGL 1454
            P + +  W   +GTL  LFF  +MGL+A+ L+SLLWV+S P + W              D  + +E +    + +++G   E + A+  +    +A +   A  G  +   +  LW RGV ++++W  W  +        G    +C             R  W    KA+N+  R     +  F + P LQ TTGL ++ L    +  +    + + G+   +EG   G 
Sbjct:  191 PITATYGWHTFDGTLQRLFFVLTMGLVAVALNSLLWVLSLPWVAWRLVCWVSYEFANEGDDDEDEETN----APVKRGKLRESLLALGTIAACWLALLFAAALCGACIVGSF-FLWFRGVWNVWEWVRWRRSEE-GKFVSGETDQECPTAMPGQEHGQNWRHAWQHVAKARNLRIR-HEHGSEHFHVAPLLQSTTGLDMKRLCSLAKKKYSDRRQKEPGDAPGEEGNGMGF 414
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig731.8.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JB40_9PHAE2.170e-926.91Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
D7FNX2_ECTSI6.460e-824.68Ion_trans domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig731contigC-tenellus_contig731:11699..15365 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size2191
Hectar predicted targeting categorysignal peptide
Exons3
Cds size705
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790027.7838323-UTR-C-tenellus_contig731:11698..126181680790027.7838323-UTR-C-tenellus_contig731:11698..12618Choristocarpus tenellus KU2346UTRC-tenellus_contig731 11699..12618 +
1680790027.8460724-UTR-C-tenellus_contig731:14799..153651680790027.8460724-UTR-C-tenellus_contig731:14799..15365Choristocarpus tenellus KU2346UTRC-tenellus_contig731 14800..15365 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790027.7949314-CDS-C-tenellus_contig731:12618..127081680790027.7949314-CDS-C-tenellus_contig731:12618..12708Choristocarpus tenellus KU2346CDSC-tenellus_contig731 12619..12708 +
1680790027.8200846-CDS-C-tenellus_contig731:13929..143341680790027.8200846-CDS-C-tenellus_contig731:13929..14334Choristocarpus tenellus KU2346CDSC-tenellus_contig731 13930..14334 +
1680790027.83565-CDS-C-tenellus_contig731:14589..147991680790027.83565-CDS-C-tenellus_contig731:14589..14799Choristocarpus tenellus KU2346CDSC-tenellus_contig731 14590..14799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig731.8.1prot_C-tenellus_contig731.8.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig731 12619..14799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig731.8.1

>prot_C-tenellus_contig731.8.1 ID=prot_C-tenellus_contig731.8.1|Name=mRNA_C-tenellus_contig731.8.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=235bp
MGLLALILSSLLWVISTPVLVWDHLQKQERSCFGRSSIRQGLTFELITAI
FRVIVWMMASIICTAAMGIVMPILYTLLWLRGVLSIFQWYNWSSTRNMSS
TEGGPLGTDCAREMWSDWDKAKNISARCFLKETSQFDIRPFLQRTTGLKL
ENLLECIEDPFKVKDGNLWEDEGKNQGLTVEHLRQYRGYAHQDLKDEVNR
ALMLLIRDKNTDDKLQPDTSCPSRIEGTATASLR*
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mRNA from alignment at C-tenellus_contig731:11699..15365+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig731.8.1 ID=mRNA_C-tenellus_contig731.8.1|Name=mRNA_C-tenellus_contig731.8.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3667bp|location=Sequence derived from alignment at C-tenellus_contig731:11699..15365+ (Choristocarpus tenellus KU2346)
AGGGACACTCCCCCCTCCTCTCAATGTGATAACTTCTGCAGTAGGTGTTA
TAATAGACACCCCGGCTATGCTTCAATGCAGCAGGTAGGTTTGGTGTGTT
TGCTGAATTGTTTATAGGTCCGCATTTTGTCAACTCGTTGTGCTTTCAGC
CAGAGAGTTGATTGGGGGTCAGAGTCCTCTGTCAGCAAGAATTTCGCGTC
TGACATCTTGTACATCAAGTATATGGGTAGTTAAAATATATTGATTGTCC
CCTTGGGATTCTGTGGGTGTTGGTGGTATGAACAGTATGGTTAGATAACA
AAGAAAGAGTCCTACTATTGAAAACTGGTAACCTCAGAGTGTTAAAATCT
AGGAATAGTTGAAATGGGAGACTGCTGAAAGATCAGGTCAACGATATTCT
TTTATGTCAAAATATACTGCTAGCTGTTAGTCCTACTTCAACCTACCTTC
GTGCAGCATACAAGATCAATAGATGTCTGCTTTGCCAGGCATAAGTGAGA
TTCTATGCGGTTGAGAAGTGATGCGTTTACCACACGAGTCCGTGGTCTCC
ACAGTTGGGTATGCATCTCGTGATCGGATTTCTTTTTTTGGTATCAAGAA
TATTGCACGCCTAATTCTTGTAGTGAGGGTGGTTGGAATTAGTTTCCGGG
TTTGGCTTTTGAAGGTGGGATTACAATTAGCTAAAACCGCATATAGGATC
AATATATGGAGTGATTCAACCACGAGTTGCAAACCCACCCCACTCCCATG
TTTTTTATTCTTTTGCAGTTTGTAGTTTAACATGAATATCGCAAAACCCA
TATACGATTGCTGATCCTAGAACCCATGTGTCTGTGCGAAATTCTTGAAG
ACCTTTCTCGAAGAGCAAAACCTGGCAAATTGTCAATGGGACACTGGGAA
CTCTCTTCTTCAGTTTCTCTATGGGTCTGCTGGCTTTGATCCTGTCTTCC
TTGCTTTGGGTAATCTCAACTCCAGTCCTGGTATGGGACCATCTCCAGAA
GCAGGAGAGGGTAAGAGTAGAACGGGTGTAATGTAAGATAACACAATGCT
CCTTTTGCTAGTGCTGATGAGGCATGGTATTGCTGAGGAATGCATTTCCT
GTAGTGTTCAACTCTTGCTCTAGCCCCCATTGGTATCTTAGATGATAGCC
GATTTGAAGCGTACACTGTAATTGTGTTTGGGTTTTCTTTGTTACCATTG
CGGTACATACATAAACCTGAACGTAATGCACAGTTTTTCTTTAACAGTAT
CTTAACACTTTGCAGAGGTCAAGCTCGATGACAAGTTCCTTGAATAATCC
GATCTGCATTTTTGCATCACACTGTTTGTGTTGGCCATCAGAAATGAATC
TACTCTAAACCTATGTTCCTACAGTACTTAATCCCACCTTTGATGCTGTT
GCCAGGAGAAATTGCATGGTTGATAATGATCTCCACTATAGCTCTACCTT
GTGAGTTTTTCTATTTTGGTGACCGAATGGTGACACCAATATTACCTGGA
AGGAGGCCAGGTGTTAGAATTGCTGTTCATGCTTTTGATGCTAGGTGAAT
GTGTGTGCTTCCCAAATGGTTGACACTGCTTTAGGGAGGCGTGACCTTCC
TCTCCTGTGTCACACATCCTCTGCTATGGTTGGTAAACCCTAAGTATGAT
ATCGTTAAGTTTTGTGTTGTTGATATTAGGAGCTTTGCAAGTCGGTCAAG
TCAATGATGTAAACATTTGTTCCGATATTCGCCATCAGAACACAAAAATT
CCCCTATTTGTTCATGTATACTCAGTATATGACTGAATCACTGGTTGCTT
GTTTCAACCTAAAAAAAAATGGACAAATTAGAAAAAAAAGGGTGTAGAGA
GGGTCAATGTATCTGGGGGGAGGGAGTGGTTTGTGAGGGGGCATCCGTTT
CGGTCAAACTCCTTTTTTTCCTGACATTTCAAATCCGACACGTGTGACCA
AATCAAACCAAAAAAGTGAAAATCGAAAAAAGGGTAAAAAAGGGACGCCG
ACACCCCCTCTCCCAGATACTTTGACCCAGATCTACATGGTTGATATACA
GTAGGTCGTGGTGCAGGTTTTCTCTTGAGCCATTGCAAGGAAATGGGTTC
ATGCTGATTGCTCTCCCTTTTGCTTAATATCTTCTCAATATGTAGACTCT
GTCCTACCAGAGACAGAACACTTGAAAATCCTGCTTCCTCTCACTAACAA
TGTCATTCCACCCATCTGTCTTCTGCCACAGTCATGCTTTGGTAGGAGCA
GCATCCGCCAGGGACTAACCTTCGAATTGATCACGGCTATTTTCAGAGTA
ATTGTGTGGATGATGGCATCGATTATTTGCACTGCTGCTATGGGCATTGT
CATGCCCATACTCTATACATTGTTGTGGTTACGGGGTGTGCTGAGCATCT
TTCAATGGTATAATTGGAGCTCAACCAGGAATATGAGCAGCACAGAAGGA
GGTCCTTTGGGGACCGATTGTGCAAGGGAAATGTGGTCTGACTGGGATAA
AGCCAAAAATATTTCAGCAAGATGTTTCCTAAAGGAGACCTCACAATTTG
ATATCAGGCCCTTCCTACAAAGGACTACTGGCCTGAAGCTTGAAAACTTG
CTCGAGTGCATTGAGGACCCCTTCAAGGTCAAAGATGTGAGTGAATGGGG
TAGACTATTTGAATGTGCTGATACGAACTTCTCACCACTCTGTCCATACT
TTAGACTTCCCACCGCTTCTGCATCTCTATGGACCTTCACTCCACAGTGG
AATATTAACATTCCCAGTTGCTGTAAATATTTATGTATTCGCCATAGAGC
CCTACTGTTGTGATCTGGAGGTGTTGCTGTATGCATGCGATCCCCCTCTT
CCCGATTTCGATAAGATATTTTACCCTGATAATGTATGCAGGGCAACCTT
TGGGAGGATGAGGGCAAAAATCAGGGATTGACTGTTGAGCATCTTCGGCA
GTACAGGGGGTATGCTCACCAAGACCTGAAAGACGAAGTCAACAGAGCCT
TGATGTTGCTGATTCGAGACAAAAACACTGATGACAAACTTCAGCCAGAT
ACCTCGTGTCCTTCTAGAATTGAAGGCACGGCCACTGCTTCTCTTCGGTA
GATGTTTTATCCGTTTGCAACATCTTCTCCTTGAGTTGTGTGAGGCATTA
TGAGTATATCGTATACTTATAGTATTATATACTACGTACTTTTTTCTGCT
TGACAGGATGTACGTAATTGGTTGGTGGTATATTGTATTGGATGGATGAG
TGGATACGGATGTATTGATGGGTGGGTGGGTGGATAGATGACTGGATGGA
TTTAATGATTGATGGAATCGTTCTTAGTCGTTGTACCTCTAGCGTGTGTT
TGATTGTTGGCGAAAATGGCATTTTTATTTTTTTTGTACGACATATTGTG
TATTGTGCAAGGTACAGTTATCTGTACTTGCAGTGTCGAAGTATAAAGCA
TGTAATTTATGAATGTATTAGAACCTGTCATGGAACTTGCCCTCCTTCTA
TTGATCGTTTGTCCTTGAACCTGCAAGGTATTGTGCCATAATTTTAGGTC
TCTTCGTACCTGTATTATGTGTCCCAAGTCTTCAAAACGACCAACTAACT
TCACTCCTCAAGCAAGAAACGTTTGCAGATTGTGTAGAAGTTAATACTGT
GACAAATTCACTCAGGG
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Coding sequence (CDS) from alignment at C-tenellus_contig731:11699..15365+

>mRNA_C-tenellus_contig731.8.1 ID=mRNA_C-tenellus_contig731.8.1|Name=mRNA_C-tenellus_contig731.8.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=705bp|location=Sequence derived from alignment at C-tenellus_contig731:11699..15365+ (Choristocarpus tenellus KU2346)
ATGGGTCTGCTGGCTTTGATCCTGTCTTCCTTGCTTTGGGTAATCTCAAC
TCCAGTCCTGGTATGGGACCATCTCCAGAAGCAGGAGAGGTCATGCTTTG
GTAGGAGCAGCATCCGCCAGGGACTAACCTTCGAATTGATCACGGCTATT
TTCAGAGTAATTGTGTGGATGATGGCATCGATTATTTGCACTGCTGCTAT
GGGCATTGTCATGCCCATACTCTATACATTGTTGTGGTTACGGGGTGTGC
TGAGCATCTTTCAATGGTATAATTGGAGCTCAACCAGGAATATGAGCAGC
ACAGAAGGAGGTCCTTTGGGGACCGATTGTGCAAGGGAAATGTGGTCTGA
CTGGGATAAAGCCAAAAATATTTCAGCAAGATGTTTCCTAAAGGAGACCT
CACAATTTGATATCAGGCCCTTCCTACAAAGGACTACTGGCCTGAAGCTT
GAAAACTTGCTCGAGTGCATTGAGGACCCCTTCAAGGTCAAAGATGGCAA
CCTTTGGGAGGATGAGGGCAAAAATCAGGGATTGACTGTTGAGCATCTTC
GGCAGTACAGGGGGTATGCTCACCAAGACCTGAAAGACGAAGTCAACAGA
GCCTTGATGTTGCTGATTCGAGACAAAAACACTGATGACAAACTTCAGCC
AGATACCTCGTGTCCTTCTAGAATTGAAGGCACGGCCACTGCTTCTCTTC
GGTAG
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