mRNA_C-tenellus_contig7278.5.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7278.5.1
Unique NamemRNA_C-tenellus_contig7278.5.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: A0A6H5JIM0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIM0_9PHAE)

HSP 1 Score: 128 bits (321), Expect = 1.010e-28
Identity = 68/152 (44.74%), Postives = 86/152 (56.58%), Query Frame = 3
Query: 1200 LGVWRVRAPKMAGRTSKNHKKG-----------------------DVYEQDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHVVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMV 1586
            +G+WR+   + A R+SK                            + YE DCT+D  WY++WY D LLPA+K  MPWL+ K VVVQQD A+PHTGKGN EIL+ AG   GW    VTQP+ SP LNI +L  F  LK RV G    S++E+V
Sbjct:  213 IGIWRICVIETAQRSSKKSTSSTAPSTRSGWREPPHGRNRPAIVQEEYEFDCTIDAEWYKDWYIDVLLPAIKEKMPWLRSKRVVVQQDGASPHTGKGNPEILNSAGIARGWLVELVTQPAQSPDLNINDLGCFASLKPRVWGVNAFSIDELV 364          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: UPI000B8A8D67 (uncharacterized protein LOC110790078 n=2 Tax=Spinacia oleracea TaxID=3562 RepID=UPI000B8A8D67)

HSP 1 Score: 75.9 bits (185), Expect = 2.590e-11
Identity = 46/165 (27.88%), Postives = 83/165 (50.30%), Query Frame = 3
Query: 1200 LGVWRVRAPKMAGRTSKNHKKGDVYEQDC-TLDHLWYREWYTDELLPAVKTMMPWLQGKHVVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVKVIKK*YEENDETTLERAWQLHFVCTIKYFDTMGG 1691
            LG++       A + SKN   G +  +   ++          DE+LPA+++  P    K + +QQD+A PH    +++    A K +G++ R + QP+ SP +N+++L FFR ++     E+ +SV+E++K +K  Y   D  +L   W     C ++     GG
Sbjct:   83 LGIFAFTEQVAAKKNSKNRCAGTIETKALHSVTKPIIGSMLIDEMLPAIRSKWPLGACKEIWIQQDNARPHIHAEDTQFKEAATK-DGFNIRLINQPAQSPDMNVLDLGFFRTIQLIQYKEFPKSVDELIKEVKDAYNIFDPKSLNYTWLHLQYCMLEILQVNGG 246          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: UPI001FB192D6 (uncharacterized protein LOC124891932 n=1 Tax=Capsicum annuum TaxID=4072 RepID=UPI001FB192D6)

HSP 1 Score: 72.8 bits (177), Expect = 1.960e-10
Identity = 46/150 (30.67%), Postives = 80/150 (53.33%), Query Frame = 3
Query: 1233 AGRTSKNHKKGDVYE---QDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHVV-VQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVKVIKK*YEENDETTLERAWQLHFVCTIK 1670
            A R SKN   G +     Q  T D    R +  +++LPA++   P     + + +Q+D+A PH GK + E +  A + +G+  R   QPSNSP LN+++LCFFR ++     +  ++V+E+V+ +++ Y+E     L   +     C I+
Sbjct:  112 AKRNSKNRTAGTMKTMPFQSVTKDIT--RVFLEEKVLPAIRAKWPASDSNNTIFLQKDNARPHIGKNDLEFIEAA-RQDGFDIRLCFQPSNSPDLNVLDLCFFRGIQSLQYQKAPKNVDELVEAVERSYDEMKAKQLNHVFLTLQSCMIE 258          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: W4G9V6_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G9V6_9STRA)

HSP 1 Score: 67.4 bits (163), Expect = 2.760e-8
Identity = 39/130 (30.00%), Postives = 70/130 (53.85%), Query Frame = 3
Query: 1200 LGVWRVRAPKMAGRTSKNHKKGDVYEQDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHVVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVK 1589
            +G+W       A R S+N   G +      ++   YR++    ++PA+K   P +  KHVV+Q D+ATPH  +  ++ L  +  T+GW+    +QP NSP LN+++L FF  ++         SV+++++
Sbjct:  190 IGMWPCVKYLPAARNSRNRATGTLVTTLVNVEGELYRDYVMTRVIPAIKACFPSMN-KHVVLQDDNATPH--RVITDELLASVSTDGWTFVVRSQPPNSPDLNVLDLGFFASIQALQYKFESHSVDDVIR 316          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: A0A1U8EH76_CAPAN (serine/threonine-protein kinase Nek6-like n=1 Tax=Capsicum annuum TaxID=4072 RepID=A0A1U8EH76_CAPAN)

HSP 1 Score: 63.2 bits (152), Expect = 3.170e-7
Identity = 31/98 (31.63%), Postives = 61/98 (62.24%), Query Frame = 3
Query: 1323 DELLPAVKTMMPWLQGKH-VVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVKVIKK*YEE 1613
            +++LPA++   P     + + +Q D+A PH G  + E++  AG+   +  R   QPSNSP LN+++LCFFR ++     +  ++V+E+V+ +++ ++E
Sbjct:   20 EKVLPAIRAKWPASDSNNPIFLQLDNARPHIGNHDLEVIEAAGQDR-FDIRLCFQPSNSPDLNVLDLCFFRAIQSLQYQKATKNVDELVEAVERCFDE 116          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: UPI00053FE848 (uncharacterized protein LOC104887828 n=2 Tax=Beta vulgaris subsp. vulgaris TaxID=3555 RepID=UPI00053FE848)

HSP 1 Score: 63.9 bits (154), Expect = 4.660e-7
Identity = 46/158 (29.11%), Postives = 73/158 (46.20%), Query Frame = 3
Query: 1239 RTSKNHKKGDV-------YEQDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHVVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVKVIKK*YEENDETTLERAWQLHFVCTIKYFDTMGG 1691
            R+S N   G +         +D T D L       + +L A+ T  P  + K + +QQD+A PH    + E +  A +  G+    V QP NSPKLN++++ +FR L+     E   +V ++V+ + K Y+E    TL   W       I+     GG
Sbjct:  254 RSSNNRPAGTLETKAVTSITRDSTRDKL------INYVLSAIMTKWPAHRSKVIYIQQDNAKPHVNSRDPEWIV-ASRQNGFEFHLVQQPPNSPKLNLLDVGYFRALQTLQHKERPNTVLKLVQAVNKSYDEFHPKTLANVWHSLQYNMIEIIKVRGG 404          
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Match: A0A6G0X8U9_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X8U9_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 9.060e-7
Identity = 42/148 (28.38%), Postives = 75/148 (50.68%), Query Frame = 3
Query: 1200 LGVWRVRAPKMAGRTSKNHKKGDVYEQDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHVVVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFFRYLKYRVMGEWFRSVEEMVKVIKK*YEENDETTLERAW 1643
            LG++       A R+S++  KG       T+    Y +   + +LPA+ T  P  + K + +QQD A PH   G  E+++ A    G + + VTQP+NSP LNI++L FF  ++     +  ++++E +  + + + E     L+  W
Sbjct:  214 LGIFPFVIHGTAKRSSRHQAKGAPVLIPQTVTRDIYVDALVNHVLPAILTKFP-SRWKTLYIQQDGARPHCTDGCPELVASAASF-GLNIKLVTQPANSPDLNILDLGFFAAIQTLQYRKCPKTIDEFLDAVHESFHELKSDCLDSVW 359          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7278.5.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5JIM0_9PHAE1.010e-2844.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
UPI000B8A8D672.590e-1127.88uncharacterized protein LOC110790078 n=2 Tax=Spina... [more]
UPI001FB192D61.960e-1030.67uncharacterized protein LOC124891932 n=1 Tax=Capsi... [more]
W4G9V6_9STRA2.760e-830.00Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A1U8EH76_CAPAN3.170e-731.63serine/threonine-protein kinase Nek6-like n=1 Tax=... [more]
UPI00053FE8484.660e-729.11uncharacterized protein LOC104887828 n=2 Tax=Beta ... [more]
A0A6G0X8U9_9STRA9.060e-728.38Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7278contigC-tenellus_contig7278:3958..5826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog42099.EPrPV00000019361
Model size1869
Max annot lvl42099.EPrPV00000019361|-
Hectar predicted targeting categoryother localisation
Exons1
Evalue7.13e-18
EggNOG OGs2CMKC@1|root,2QQNW@2759|Eukaryota,1MJMG@121069|Pythiales
DescriptionSource PGD
Cds size375
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.4319956-UTR-C-tenellus_contig7278:3957..42221680790025.4319956-UTR-C-tenellus_contig7278:3957..4222Choristocarpus tenellus KU2346UTRC-tenellus_contig7278 3958..4222 -
1680790025.457462-UTR-C-tenellus_contig7278:4597..58261680790025.457462-UTR-C-tenellus_contig7278:4597..5826Choristocarpus tenellus KU2346UTRC-tenellus_contig7278 4598..5826 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790025.4479413-CDS-C-tenellus_contig7278:4222..45971680790025.4479413-CDS-C-tenellus_contig7278:4222..4597Choristocarpus tenellus KU2346CDSC-tenellus_contig7278 4223..4597 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7278.5.1prot_C-tenellus_contig7278.5.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7278 4223..4597 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7278.5.1

>prot_C-tenellus_contig7278.5.1 ID=prot_C-tenellus_contig7278.5.1|Name=mRNA_C-tenellus_contig7278.5.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=125bp
MAGRTSKNHKKGDVYEQDCTLDHLWYREWYTDELLPAVKTMMPWLQGKHV
VVQQDSATPHTGKGNSEILSGAGKTEGWSSRPVTQPSNSPKLNIMELCFF
RYLKYRVMGEWFRSVEEMVKVIKK*
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mRNA from alignment at C-tenellus_contig7278:3958..5826-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7278.5.1 ID=mRNA_C-tenellus_contig7278.5.1|Name=mRNA_C-tenellus_contig7278.5.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1869bp|location=Sequence derived from alignment at C-tenellus_contig7278:3958..5826- (Choristocarpus tenellus KU2346)
ATTGGTTCAATATTTACCCATAAATTACACTCTTCATCATTGTTGTCGTA GTGCTAGTGCTAGTAGGATTGACTCAAATAGTAGTGGGTACTGCAGAGGA CGCTTGAGGTTGCTGCAAAATACATACAATGTTCTTGGTTGTGTGAAGTA CCTTCTTAGGCACACAGTAGAGGTGTTTCTCATTTTGATTGGGCATTTGT TTCATTATTAGGTCAACCATGTCATAGCACAGAAATCCGACAACAGTGTC TCTGCGTTACTCTATGTATTTTCGAGGCTTCCTGTGTCCAAGAAACGAAA CAGGAAGGGGGGACAGTGAGTCACTGCAGTGTTGAGCGTGTGCACAGTGG ATACATACTACCTCCGTGCCATAAGTTTGTGTCACGAAACATCTGGGCTT GTTGAGTGAGAACGGGGCTGAATCGGGCGATAAACTCACACAATGTAATC GGTTTGACAATCTCAGCTTTCAGAAAAGTGGGGATCGATGGTAACCCCCC TGTAAACACCCCCAGGAAGGAAGGTGCCCAAGTGTCCCTGAATACTAGGG TTGCGCTTGCAGTGAGGCACGCCGTCACGATGGTCCCTGGCGAGCATAAA CTGCCGCGACACATTGGGTCGGCCCTCGCAGCGGAGTTTGGAGTGTCCGA GCGTTACATGTGAGGGCTCTGGGAGGACGTTGCCAATCAACTTGCCTGTG GTCACAGGTTTGACCTAGGGGTGGCGGCGCGTAGTGGGCGGCATTCAGAG CTCACACTGACCAAGATGGCCGTAATACATAGTATCAACTCCGACAATCG GTCATCCACGGTGCATCAGGTGACAATGAAGATGGCCACCAAGGGGCTGA ACTATACCACGAGCACTGTAAGGAGGTGTTGGATGATGTGGGGGCCATGC CGAATCGCTGCTGGATCAAACCCAAGCTTAAATCGTGGTAAAAGGTATGG AGATTGGACTTATTTATGATCAAGTGGACCGGAAACGTGGTGTGAACGCT TCCATCGAAAACATGATCCATGTGGGTGAAACCTGGTTTTACATGATGGC TGATGGGGAAAGGGTTAGGGTATTTCCGCATGAGGATGCTAGCGACCTTC CAGGGTCCCCTACTGTGCAGCACAAGAGTCATATCCCCAAAACCATGATC ATTGCAGCCAACGCCCGCCCAGATTCAGCTCACAGCTTTGATGTAAAGCT TGGGTGTTTGGCGTGTACGTGCGCCAAAAATGGCAGGCAGGACAAGCAAG AACCATAAGAAGGGGGATGTGTATGAGCAGGACTGTACTTTAGACCATTT GTGGTACAGGGAGTGGTACACGGATGAGCTACTGCCTGCAGTCAAGACCA TGATGCCTTGGTTGCAGGGGAAGCATGTTGTCGTTCAGCAAGACAGTGCC ACCCCCCACACGGGCAAGGGCAACTCAGAAATCTTGTCAGGGGCAGGGAA AACTGAGGGGTGGTCGAGTAGACCTGTGACCCAGCCATCTAACTCCCCCA AACTCAATATCATGGAGCTGTGCTTCTTCAGATATTTGAAATACCGGGTG ATGGGGGAGTGGTTTAGGTCCGTTGAGGAGATGGTGAAGGTTATTAAGAA ATAGTACGAGGAGAACGATGAAACCACACTTGAGAGGGCTTGGCAGCTCC ATTTTGTGTGTACAATCAAGTACTTCGATACAATGGGGGGAATGACTTGA GTGTGGAGCACACAAGGGTAAGGAAAAGGCAGTTATCTGGTGAGCTTGAA AATAAGGTAGATATGGAGGCTTTTTCTGTGGCTGCTAAAATTGTGATGAA TGGGGAGTGATAAGAATAAGCCTCGGTAAGCAAGCAGAAAATTTTCTGGA TGAGTTGGCTATCCACGTG
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Coding sequence (CDS) from alignment at C-tenellus_contig7278:3958..5826-

>mRNA_C-tenellus_contig7278.5.1 ID=mRNA_C-tenellus_contig7278.5.1|Name=mRNA_C-tenellus_contig7278.5.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=375bp|location=Sequence derived from alignment at C-tenellus_contig7278:3958..5826- (Choristocarpus tenellus KU2346)
ATGGCAGGCAGGACAAGCAAGAACCATAAGAAGGGGGATGTGTATGAGCA
GGACTGTACTTTAGACCATTTGTGGTACAGGGAGTGGTACACGGATGAGC
TACTGCCTGCAGTCAAGACCATGATGCCTTGGTTGCAGGGGAAGCATGTT
GTCGTTCAGCAAGACAGTGCCACCCCCCACACGGGCAAGGGCAACTCAGA
AATCTTGTCAGGGGCAGGGAAAACTGAGGGGTGGTCGAGTAGACCTGTGA
CCCAGCCATCTAACTCCCCCAAACTCAATATCATGGAGCTGTGCTTCTTC
AGATATTTGAAATACCGGGTGATGGGGGAGTGGTTTAGGTCCGTTGAGGA
GATGGTGAAGGTTATTAAGAAATAG
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