mRNA_C-tenellus_contig7131.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7131.1.1
Unique NamemRNA_C-tenellus_contig7131.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A6H5JML2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JML2_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 3.040e-89
Identity = 134/184 (72.83%), Postives = 161/184 (87.50%), Query Frame = 1
Query:    1 QAGLAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDESGEGGFKRSVKWFRKWLNEQGHDSKA 552
            +AGLAML+SRMY +AP+EY+F P TW+LPAE+NEFR E FGP G S + FI+KPDAGCQG+GIFLTK+L SV+ L GKSVAQRYL NPLLIDGYKFDLRLYVL+T+V+P+R+F+F+DGLVRICTE +E P + NI+K  MHLTNYSVNK +SNF+SD+ GE GFKRSVKWF+KWL+EQGHDS A
Sbjct:  672 KAGLAMLMSRMYHEAPKEYKFFPETWVLPAEINEFREE-FGPKGTSKSTFIIKPDAGCQGKGIFLTKQLSSVAALQGKSVAQRYLTNPLLIDGYKFDLRLYVLVTSVNPMRIFLFEDGLVRICTEAYEAPTEININKTTMHLTNYSVNKTSSNFTSDDMGESGFKRSVKWFKKWLDEQGHDSAA 854          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: D7FXY6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXY6_ECTSI)

HSP 1 Score: 294 bits (752), Expect = 6.670e-89
Identity = 136/184 (73.91%), Postives = 163/184 (88.59%), Query Frame = 1
Query:    1 QAGLAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDESGEGGFKRSVKWFRKWLNEQGHDSKA 552
            +AGLAML+SRMY +AP+EY+F P TW+LPAEMNEFR E FGP G S +IFI+KPDAGCQG+GIFLTK+L SV+ L GKSVAQRYL NPLLIDGYKFDLRLYVL+T+V+P+R+F+F+DGLVRICTE +E P ++NI+K  MHLTNYSVNK +SNF+SD+ GE GFKRSVKWF+KWL+EQGHDS A
Sbjct:  666 KAGLAMLMSRMYHEAPKEYKFFPETWVLPAEMNEFREE-FGPKGTSKSIFIIKPDAGCQGKGIFLTKQLSSVAALQGKSVAQRYLTNPLLIDGYKFDLRLYVLVTSVNPMRIFLFEDGLVRICTEAYEAPAESNINKTTMHLTNYSVNKTSSNFTSDDMGESGFKRSVKWFKKWLDEQGHDSAA 848          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A7S1UJL5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UJL5_9STRA)

HSP 1 Score: 198 bits (504), Expect = 1.760e-59
Identity = 97/186 (52.15%), Postives = 128/186 (68.82%), Query Frame = 1
Query:    1 QAGLAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDES--GEGGFKRSVKWFRKWLNEQGHDSKA 552
            +A +A  L +M R  P EY F P+TW+LP E  +F+   F   G+S  IFI+KPD+GCQGRGIFLT  L+ V +L    VAQ+Y+  PLLI+ YKFDLR+YVL+T+  PLR+++F DGLVR+ T+++  P KANI+  CMHLTNY+VNK N NF   +   GE G KRS+ WF +W+ E   D KA
Sbjct:  131 KARMAQNLEKMRRLFPSEYNFYPKTWVLPTEFGDFKTH-FDSHGKSRQIFIIKPDSGCQGRGIFLTSSLDQV-DLQESQVAQQYIRRPLLIEEYKFDLRIYVLMTSCKPLRIYLFRDGLVRLATQEYVKPSKANINDRCMHLTNYAVNKTNDNFQKADQAMGESGSKRSLAWFMRWIAETRGDKKA 314          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: F0YJJ4_AURAN (Uncharacterized protein (Fragment) n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YJJ4_AURAN)

HSP 1 Score: 197 bits (500), Expect = 3.680e-59
Identity = 97/184 (52.72%), Postives = 131/184 (71.20%), Query Frame = 1
Query:   10 LAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDES---GEGGFKRSVKWFRKWLNEQGHDSKA 552
            LA  L +M R+ P+EY F PRTW+LP E+ +FR + F   GRS+  +IVKPD+GCQGRGIFLT+  ES+S L  + VAQ Y+  P LIDGYKFDLRLYVL+T+  PLR+++F DGLVR+CTE++  P   N+   CMHLTNY++NK N NF ++E+   G  G KRS++WF  ++  +   +KA
Sbjct:   43 LAQNLEKMRREFPKEYSFYPRTWVLPLELADFRAQ-FDSMGRSSRFYIVKPDSGCQGRGIFLTQAFESISPLE-QVVAQHYIRKPFLIDGYKFDLRLYVLMTSCKPLRMYLFHDGLVRLCTEEYLKPNAENVAMRCMHLTNYAINKHNENFQTNENAYAGNVGSKRSLRWFMDYIAAEKGQAKA 224          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A482SKE0_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SKE0_9ARCH)

HSP 1 Score: 195 bits (495), Expect = 1.380e-58
Identity = 98/183 (53.55%), Postives = 134/183 (73.22%), Query Frame = 1
Query:   22 LSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRS--NNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFS---SDESGEGGFKRSVKWFRKWLNEQGHDSKAS 555
            L+RM R  P+EY F PRTWILP+E+N+FR + F  +G S  N IFI+KPDAGCQGRGIFLT+ +++V  +    VAQ Y+  PLL+D YKFDLR+YV +  V PLRL++F DGLVR+CTE++  P K N++++CMHLTNY+VNK N+NF+   S E  +   KRS++WF ++L     D+KA+
Sbjct:   19 LNRMQRMFPKEYSFYPRTWILPSELNDFRTQ-FDSNGVSLNNKIFIIKPDAGCQGRGIFLTRTMDNVP-VTENVVAQVYIKKPLLLDNYKFDLRIYVYVAGVKPLRLYLFHDGLVRMCTEEYVKPTKQNLNQMCMHLTNYAVNKHNNNFAQPASIEDQDHSSKRSLQWFMQYLANNFGDAKAN 199          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A6H5KPS6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPS6_9PHAE)

HSP 1 Score: 194 bits (493), Expect = 9.930e-55
Identity = 98/182 (53.85%), Postives = 125/182 (68.68%), Query Frame = 1
Query:   10 LAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDESGEGGFKRSVKWFRKWLN-EQGHDSKA 552
            LA  L RM R  P EY F PRTW+LP E   F+ E F  SG+S   FIVKPD+GCQGRGIFLT+ LE V E     VAQ Y+  PLLI+G+KFDLRLYVL+T+V PLR++ F DGL R+CTE++      N+ + CMHLTNY+VNKG+ NF +++  + G KRS++W   W+  E+G   KA
Sbjct:   73 LAQNLDRMRRTFPHEYSFYPRTWVLPVEWGTFKTE-FDTSGKSTRTFIVKPDSGCQGRGIFLTQNLERV-EATESQVAQLYVQRPLLIEGFKFDLRLYVLVTSVIPLRVYAFKDGLTRLCTEEYSRASSDNLGRRCMHLTNYAVNKGSDNFVANDQADLGSKRSLRWLLGWIAAERGGQEKA 252          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: D8LM22_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LM22_ECTSI)

HSP 1 Score: 194 bits (494), Expect = 3.600e-54
Identity = 98/182 (53.85%), Postives = 125/182 (68.68%), Query Frame = 1
Query:   10 LAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDESGEGGFKRSVKWFRKWLN-EQGHDSKA 552
            LA  L RM R  P EY F PRTW+LP E   F+ E F  SG+S   FIVKPD+GCQGRGIFLT+ LE V E     VAQ Y+  PLLI+G+KFDLRLYVL+T+V PLR+++F DGL R CTE++      N+ + CMHLTNY+VNKG+ NF +++  + G KRS++W   W+  E+G   KA
Sbjct:  106 LAQNLDRMRRTFPHEYSFYPRTWVLPVEWGAFKTE-FDASGKSTRTFIVKPDSGCQGRGIFLTQDLERV-EATESQVAQLYVQRPLLIEGFKFDLRLYVLVTSVIPLRVYVFKDGLTRFCTEEYSRASSDNLGRRCMHLTNYAVNKGSDNFVANDQADLGSKRSLRWLLGWIAAERGGQEKA 285          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A2R5G326_9STRA (Tubulin polyglutamylase ttll6 n=1 Tax=Hondaea fermentalgiana TaxID=2315210 RepID=A0A2R5G326_9STRA)

HSP 1 Score: 183 bits (465), Expect = 1.290e-52
Identity = 89/181 (49.17%), Postives = 128/181 (70.72%), Query Frame = 1
Query:    1 QAGLAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDESGEG---GFKRSVKWFRKWLNEQ 534
            + GL   L+++ +  P ++ F P+TW+LP + +EF+      SG+ N  FI+KPDA CQG+GIFLT+  E+V+    + VAQRYL  PLLIDG+KFD+R+YV++T+VDPLR+F+F+DGLVRICT+K+  P   N+ K  MHLTNY++NK + +F  +E+      G KRS++WF  WL EQ
Sbjct:  152 KGGLGKHLTQLAKLFPSDFSFFPQTWVLPQQWSEFKERI--ESGKGNRTFIIKPDASCQGKGIFLTRTHENVNPTESQ-VAQRYLHKPLLIDGFKFDMRIYVILTSVDPLRIFLFEDGLVRICTQKYVEPRGRNLQKSRMHLTNYAINKESEDFVFNEATSDPGTGNKRSLRWFWGWLEEQ 329          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A835Z3E5_9STRA (Tubulin-tyrosine ligase/Tubulin polyglutamylase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3E5_9STRA)

HSP 1 Score: 179 bits (455), Expect = 2.520e-52
Identity = 88/187 (47.06%), Postives = 124/187 (66.31%), Query Frame = 1
Query:    1 QAGLAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSD---ESGEGGFKRSVKWFRKWLNEQGHDSKA 552
            +A +A  L RM R  P +YRF PRTW+LP+E    R E F  +GRS    IVKPDAGCQG+GI+LT++L+         V Q Y+  PLLIDGYKFDLR+YVL+T++ PLR++ F DGL R+CT  +  P  AN+   CMHLTNY++N+ + NF ++   E  + G KRS++W  +W+ +   +++A
Sbjct:   35 KARMAQALDRMRRAFPLDYRFYPRTWVLPSEACALRSE-FDAAGRSARTLIVKPDAGCQGKGIYLTQELDDRLLSMDSQVVQLYVRRPLLIDGYKFDLRVYVLVTSIRPLRVYAFRDGLARLCTSAYVRPAAANMGDRCMHLTNYAINRRSDNFVANADAERDDTGSKRSLRWLLEWVGQTHGEARA 220          
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Match: A0A7S3ZQE5_9STRA (Hypothetical protein n=4 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZQE5_9STRA)

HSP 1 Score: 187 bits (474), Expect = 4.330e-52
Identity = 93/180 (51.67%), Postives = 129/180 (71.67%), Query Frame = 1
Query:   10 LAMLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPDAGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLITNVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFSSDES---GEGGFKRSVKWFRKWL-NEQG 537
            LA  L +M R   +EY F PRTW+LP E+ +FR + F  +GRS+  +I+KPD+GCQGRGIFLT+  ES+S L  + VAQ Y+  P LIDG+KFDLRLYVL+T+  PLR+++F DGLVR+CT+K+  P   N+   CMHLTNY++N+ + NF  +E+    + G KRS++WF  +L NE+G
Sbjct:   98 LAQNLEKMRRGFQKEYNFYPRTWVLPLELADFRAQ-FDSNGRSSQFYIIKPDSGCQGRGIFLTQNFESISPLE-QVVAQHYIRKPFLIDGFKFDLRLYVLVTSCKPLRVYLFRDGLVRLCTQKYLKPNPGNVAMRCMHLTNYAINRHSENFQGNETLGACDIGSKRSLRWFMDFLANEKG 275          
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7131.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JML2_9PHAE3.040e-8972.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FXY6_ECTSI6.670e-8973.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S1UJL5_9STRA1.760e-5952.15Hypothetical protein (Fragment) n=1 Tax=Phaeomonas... [more]
F0YJJ4_AURAN3.680e-5952.72Uncharacterized protein (Fragment) n=2 Tax=Aureoco... [more]
A0A482SKE0_9ARCH1.380e-5853.55Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A6H5KPS6_9PHAE9.930e-5553.85Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LM22_ECTSI3.600e-5453.85Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A2R5G326_9STRA1.290e-5249.17Tubulin polyglutamylase ttll6 n=1 Tax=Hondaea ferm... [more]
A0A835Z3E5_9STRA2.520e-5247.06Tubulin-tyrosine ligase/Tubulin polyglutamylase (F... [more]
A0A7S3ZQE5_9STRA4.330e-5251.67Hypothetical protein n=4 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7131contigC-tenellus_contig7131:166..4239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D7FXY6
PFAMsTTL
Model size558
Max annot lvl2759|Eukaryota
KEGG koko:K16582
Hectar predicted targeting categoryother localisation
Exons5
Evalue3.44e-87
EggNOG OGsKOG2158@1|root,KOG2158@2759|Eukaryota
Ec32 ortholog descriptionTubulin-tyrosine ligase/Tubulin polyglutamylase
Ec32 orthologEc-19_002060.1
Descriptionpositive regulation of cilium movement
Cds size543
COG categoryKT
BRITEko00000,ko01000,ko03036,ko04812
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7131.1.1prot_C-tenellus_contig7131.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7131 181..4239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.955051-UTR-C-tenellus_contig7131:165..1801680790014.955051-UTR-C-tenellus_contig7131:165..180Choristocarpus tenellus KU2346UTRC-tenellus_contig7131 166..180 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790014.9690459-CDS-C-tenellus_contig7131:180..2821680790014.9690459-CDS-C-tenellus_contig7131:180..282Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 181..282 +
1680790014.9809904-CDS-C-tenellus_contig7131:814..9011680790014.9809904-CDS-C-tenellus_contig7131:814..901Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 815..901 +
1680790014.9977896-CDS-C-tenellus_contig7131:1762..19151680790014.9977896-CDS-C-tenellus_contig7131:1762..1915Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 1763..1915 +
1680790015.0075252-CDS-C-tenellus_contig7131:3314..34041680790015.0075252-CDS-C-tenellus_contig7131:3314..3404Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 3315..3404 +
1680790015.019175-CDS-C-tenellus_contig7131:4128..42391680790015.019175-CDS-C-tenellus_contig7131:4128..4239Choristocarpus tenellus KU2346CDSC-tenellus_contig7131 4129..4239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7131.1.1

>prot_C-tenellus_contig7131.1.1 ID=prot_C-tenellus_contig7131.1.1|Name=mRNA_C-tenellus_contig7131.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=181bp
MLLSRMYRQAPEEYRFVPRTWILPAEMNEFRREPFGPSGRSNNIFIVKPD
AGCQGRGIFLTKKLESVSELPGKSVAQRYLLNPLLIDGYKFDLRLYVLIT
NVDPLRLFIFDDGLVRICTEKFEVPCKANIDKLCMHLTNYSVNKGNSNFS
SDESGEGGFKRSVKWFRKWLNEQGHDSKAS*
back to top

mRNA from alignment at C-tenellus_contig7131:166..4239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7131.1.1 ID=mRNA_C-tenellus_contig7131.1.1|Name=mRNA_C-tenellus_contig7131.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4074bp|location=Sequence derived from alignment at C-tenellus_contig7131:166..4239+ (Choristocarpus tenellus KU2346)
CAGGCGGGCTTGGCAATGCTTTTGTCCCGGATGTACAGGCAGGCACCAGA GGAGTACCGATTTGTCCCACGGACATGGATACTGCCAGCAGAGATGAACG AGTTCAGGCGAGAACCTGTAGATTGGGGCAGGGAAAGGCACAGAAACGAA ACGTTTTTTTTCAGTTGATCTACACACAAGCTTACTGGTTGGGGAACAGA GTACAGACCTCACCTCCAGCAAAGACCCTACCAAGTGTTCCAATTCAGTA AACATAACTAAACTACGGGGATGTTAATTTTTTGAGGCTGAACATTTTAG ATCTATTTGGGCAGAGTATTCTGCTATAGCTCTGATGCTACTATTGGGTG GCATTTGCACGCTTCAAGGAATTGACTCGGCAAATCTTCATTTGGACACA AAAGTGAATGGGAGATCACTGAGCTAGGGAGTGCTCTGACAGTGTGCATC ATGCCTGCAGGATAAGATCCCCGAGCAGAAAATTCTTTCAAGACAACTAC AATTGCCCCCCCCCCAAAAAAAAACTACCCACTTTTCAGTTGATTACTTT ACCCACTCTCCCGAGTGTCTCTTTCTGATCCCTTCTTTTGTTCTCACCCT CCCATCCAATACCAACAAACTGACTGCATGATTTCCTTGTAGGTCTGAGT TTGGTCCATCTGGTAGAAGCAATAATATATTCATCGTGAAGCCTGATGCA GGGTGCCAGGGTCGGGGCATATTTCTCACCAAAAAGGTGAAATACGTCAG CAGACTGCATGTTACAGTTATGAGAGTGTGTCATACTTGGTAGGTAGAGG CCACACCTACCGTGGAGATAATCTCCTCAAGAGAATGTGCTGAGGTTTGG ACAGAAAGGCTAGGTGCAGCAATGGTGTACAGTGGTATTTACAGTCTCAC TTTTATGATGATTGTTGATGAGGTGAAACAAGCAAGAGCCCTTTGATAGG AAGGGTCAAAACTATTTGAAGCCATTGGCAAGGTGAAAACGAAGAGAGAA ACACCAAGTTCTCGGCAAACAAACAAATGGTCGTGAAGGGAGGGGCGTTT AATTAACCTATGCAGGCAAGGTCGGTCAAGGCAGACAACAAACAGGCTAT CCTGTCAAATAATCAGGGTTGAACTTGAGACACGAAAGCAGTCAGCCCCT AGAATTTTGGTATTGGAAGGGGTTTCAGTCCGACCAACCAGTCATCTCAA TTGGTCAAATGTGACAAACATATTTATGAATGCTCAGACCAGGATTCCAT TGCATGTGATACATGCATTGTGGTTGAAGCGGAAAGGTCGCCAGTGATGA TGAGGAGATGAGAGGGTAGTGAGGTAGGAAGGGCAGGCGAAAGGCGGTTG TCCAAACAATTATACATGCGGTCAACCCCAACAAGTGTTCCCTGAAGGAT CAACATTTTCAGTATATCCCACTTTCTCAAAGAGTGAGGTTCCCTTAGAA CCTCCGTCTCGCCAAAGCATCGCACAAGAAGTTGGCTCTCAAGGTGCGAA TGGTCGTCTACTCAGTCTGCAACGATGAAGGTGTTTGTTCCAACCTTGCT TTTCCTCTCCCATTTGAATTGGTCAATTCGCCCCGCATGCCTCGCAGCTG GAATCAGTTTCAGAACTCCCTGGGAAGTCAGTTGCCCAGCGATACCTGCT CAATCCACTCCTGATTGATGGGTACAAGTTTGACCTCCGACTCTACGTGC TCATCACTAACGTAGATCCCTTACGGCTCTTCATCTTTGATGATGGTCTG GTAAGTGACATATTTTTTGAGAGTGGGGAGAGAGTGCTTGTGTATGCCCA CGTTAAATGATATACAGTTGTGCTCAGTGCGTTCTCCAGATGTGGGCGTG GGGTCGAAGTATCTTAGAGGGTAGAGCCGCGTCCATTTGGAGGCCAGAAT CCAATGTTGCGATTTTGATGCAATTTTGGCTATCGTGTTTGTTGGAAAGC GTCAATATCCTTTTTCCGGACACACCTTCTCATAATATATACATGTACCT ACTCCAAAACGTTTTGCAGTAGGTGAGTCAAAGTATCTTAGAGGGTACAG TCGCGTCCATTTGGGGGCCANNNNNNNNTCCGGACGCACCTTTTCATAAT GTATACATTTTACCTACTCCAAAATAGTTCGTAGTAGGAAAATGTCATTA AAAACCCGTGGGAAGTCAAGCTCCAAACGGACAAACAGGGCAAAACTCGT ACCCTAACCCTAACATACTTTCACTAAGGTAAATGTCATAAAAATACCCC ATGGGAAGCCAAGTCCCAAACGGACAAACAGGGCAAAACTAGTACCCTCT AAGATACTTTCACTCCGTGACAAGATTTACTTGTTCCTCTTGCTTCTATT GTTTTCACAGCTTGTATCTTCGAACCTTGGGTTACGATAACCTTGGATGG CATGGTTCTCCCTCCAAGTACTGTTGTATACACCTTCAACAAGAAATGAT CTTAACAGCACTGTGGGGTTGCTTTGGAAAGGGTAGACCCAATGCATTTG GCAAGTACAGTGCACTACAGAGTGCTACGATGTTGTCTGGGGCATTTGTA TCTGTACAAAGTTTTCGTATTTTTTCAGTAAGAAAATTGACATAACACTT CTGGTGCGCCTGTCAACTAATCAAACACTCCAAGTCTCCAGAAAGTATAC GAGCCATGCTGAGAATACAAATGTTAGGGTAGAGGTAGAGGGGGGGAAAT GGTACACAAAAGCAAAAATTGCATCACATTGGGTCATTTTACTCTTTACA AAAAAATGGTTTGTCTGATTGTCACATCACATTGGGCCATTTTACAATTG ATCTCCCATCATTTCAACACTAGCATCACTCAGACATGACCACAACTAAC CTTTGCTAATAAACTACAGAATAGTGCTAGAGTACGGTATGTCTTTGTCG TGTTGTTCAACGATAATCTTTGACATCCCCGCCACATTTAGTAGTGTGCG CGCGATCATCAATTTCCTGTATGTGAGGTCTTACTGCACACCTCGGTAAG ACCTTGTAGTGTGTTTTCCTGATGGACCCCCACACCACACCCTTGCGCCA TCTTCAACGATAACATATCCTCTCCACGAGTTTCTATAATAAAAAAACCC CTACACTGCTGCCTCCCTAACCCTCCCTCGTTCGACTCCTTTTTTCAAGG TTCGAATTTGCACGGAAAAGTTCGAAGTGCCCTGCAAGGCAAACATCGAC AAGTTATGCATGCACCTCACCAACTATAGTGTGAACAAGGTCTGATTCCA TCAAATGGTATCCTAGAGGGGTGTGGATTTTTTTTCTGCTCTTCTTGTTT GTTAGGAGGTTACCAAAAAATGTGATGCCTGATACCCCATTTTCATGGTC CAAATTCAGGAAACTCCCGCCCACGAGAAATCTGTACATAGAAGGAAATT CCTTAGGGATGGATTTTCTGTCATTGGATCGGAGGATGTAGGGACTTGAA GACACAAATCAGAACGTAGTCACAGAGATACCGAAACATTAATGGGCCCA GCAGAAGAGCGCAAATCAATCTATTCTGTGCGTCCACTTGGCTGCAAGCA ATGTTACAAGCACATCTACTATGTTGTGGTATCTATGTATCCACCTGCCC ATCCTTCTGCCGAGTACTCTGCTGTTACAACTGTGTCCTTCGAAGTATTT GTATTGCTGCTTAGACGGTAGCGGCTCTTCAATACCAAAAAACATTAGGG GAAAAATAAGCATACGCGTCTGATCTAATACACATCAACATCGGGTTGCA CTTAGTATTTATTACCTAGTGCATTTTATTGCTGTGCTTCAGTTTGTTCA ACTTTCCTGGAGCATCTCTTCTACCACCCCCTCAGAGCAGTGTTTCCCAA TATTCCGATTTTTGCAAGAGCATTGTTTCTGCTCGAGAACACGGGGCTCC TCGTTTCTGGACTGCTCTCGGCCTGCTACAGTTTGACTTCATACTGTCCC TTGCTTCTTTCAGGGGAACAGTAATTTTTCCAGCGATGAATCAGGAGAGG GCGGCTTCAAGCGTTCAGTAAAGTGGTTCAGAAAGTGGCTAAATGAGCAG GGTCATGATAGCAAGGCAAGTTGA
back to top

Coding sequence (CDS) from alignment at C-tenellus_contig7131:166..4239+

>mRNA_C-tenellus_contig7131.1.1 ID=mRNA_C-tenellus_contig7131.1.1|Name=mRNA_C-tenellus_contig7131.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=543bp|location=Sequence derived from alignment at C-tenellus_contig7131:166..4239+ (Choristocarpus tenellus KU2346)
ATGCTTTTGTCCCGGATGTACAGGCAGGCACCAGAGGAGTACCGATTTGT
CCCACGGACATGGATACTGCCAGCAGAGATGAACGAGTTCAGGCGAGAAC
CTTTTGGTCCATCTGGTAGAAGCAATAATATATTCATCGTGAAGCCTGAT
GCAGGGTGCCAGGGTCGGGGCATATTTCTCACCAAAAAGCTGGAATCAGT
TTCAGAACTCCCTGGGAAGTCAGTTGCCCAGCGATACCTGCTCAATCCAC
TCCTGATTGATGGGTACAAGTTTGACCTCCGACTCTACGTGCTCATCACT
AACGTAGATCCCTTACGGCTCTTCATCTTTGATGATGGTCTGGTTCGAAT
TTGCACGGAAAAGTTCGAAGTGCCCTGCAAGGCAAACATCGACAAGTTAT
GCATGCACCTCACCAACTATAGTGTGAACAAGGGGAACAGTAATTTTTCC
AGCGATGAATCAGGAGAGGGCGGCTTCAAGCGTTCAGTAAAGTGGTTCAG
AAAGTGGCTAAATGAGCAGGGTCATGATAGCAAGGCAAGTTGA
back to top