mRNA_C-tenellus_contig7112.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig7112.2.1
Unique NamemRNA_C-tenellus_contig7112.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig7112.2.1 vs. uniprot
Match: D8LR38_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LR38_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 1.540e-13
Identity = 79/273 (28.94%), Postives = 123/273 (45.05%), Query Frame = 2 
Query:  470 LTAEQKRELRSMKSHEIYIKRKHMEQQPLIEKARDLEGKRIEIYDGTANVWRKMEVSSVTAKWIENNT------VVRI--SYDLQPFDDSW---------------------------------------NPVGPK-----VEVALDQVRWTMLSAGP-----DNTQMQELTDQGFAKTTAIISKAENKLSQLRGVFEREKHALEKERKTEDAAAKMVHDTIIQKTKASCLAESTILAAKDEKT-VEVPSLHRAYLSKWKLYITLP-QGVQAT 1111
            L  +++R +RSMKS + Y+KRK   QQ  I +A  + G++IEI+DG ANVWR + ++SV  +W++  T      VVR+  + + +P ++                                         N V P+      EV L++VRW   +  P       +   +L +   + + A++ K E  L  L+     E  AL+K R  ED A  M  D    K K    AE+TIL+   +K   E+ +L R+  + WKL I  P  G +AT
Sbjct: 1144 LPPDERRLIRSMKSKDGYLKRKRDAQQHRIAEAEAMVGRKIEIFDGAANVWRTVVIASVCVRWVDLGTKLVLRHVVRVLGAEEDEPDNNRTESENETRGQGNNQVEGRRKSDGGDGDRXXXXGSRGGGRDNSVAPRSRAATAEVDLNEVRWAEYTGRPKERKPSRSNAAKLAEFKVSGSDAVLQKTEKALLALQHELGEEVQALKKRRDIEDTAVSMAKDVETSKVKVHSTAEATILSRSQKKNKAEIQTLARSLRNDWKLGIGAPPSGKRAT 1416
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig7112.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LR38_ECTSI1.540e-1328.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig7112contigC-tenellus_contig7112:1277..5990 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog2880.D8LR38
Model size1848
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons5
Evalue2.54e-07
EggNOG OGs2C4QV@1|root,2QVNB@2759|Eukaryota
Cds size1005
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig7112.2.1prot_C-tenellus_contig7112.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig7112 2002..5872 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790013.5737295-UTR-C-tenellus_contig7112:1276..20011680790013.5737295-UTR-C-tenellus_contig7112:1276..2001Choristocarpus tenellus KU2346UTRC-tenellus_contig7112 1277..2001 -
1680790013.6423843-UTR-C-tenellus_contig7112:5872..59901680790013.6423843-UTR-C-tenellus_contig7112:5872..5990Choristocarpus tenellus KU2346UTRC-tenellus_contig7112 5873..5990 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680790013.5858912-CDS-C-tenellus_contig7112:2001..21511680790013.5858912-CDS-C-tenellus_contig7112:2001..2151Choristocarpus tenellus KU2346CDSC-tenellus_contig7112 2002..2151 -
1680790013.6008623-CDS-C-tenellus_contig7112:2337..24951680790013.6008623-CDS-C-tenellus_contig7112:2337..2495Choristocarpus tenellus KU2346CDSC-tenellus_contig7112 2338..2495 -
1680790013.6097395-CDS-C-tenellus_contig7112:4277..44971680790013.6097395-CDS-C-tenellus_contig7112:4277..4497Choristocarpus tenellus KU2346CDSC-tenellus_contig7112 4278..4497 -
1680790013.618472-CDS-C-tenellus_contig7112:4762..48671680790013.618472-CDS-C-tenellus_contig7112:4762..4867Choristocarpus tenellus KU2346CDSC-tenellus_contig7112 4763..4867 -
1680790013.628927-CDS-C-tenellus_contig7112:5500..58721680790013.628927-CDS-C-tenellus_contig7112:5500..5872Choristocarpus tenellus KU2346CDSC-tenellus_contig7112 5501..5872 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig7112.2.1

>prot_C-tenellus_contig7112.2.1 ID=prot_C-tenellus_contig7112.2.1|Name=mRNA_C-tenellus_contig7112.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=335bp
MQMHCIDACSKQVSQLGLSNVIRTSSPLHECIYIAPSNGETDVAQGFAHS
AQGRGVLTFATFNQQKLPSILCQQFRAAEGYGSGETKTGQSLTLDCSRLA
SSPPKVTNKKVKALLKDLTAEQKRELRSMKSHEIYIKRKHMEQQPLIEKA
RDLEGKRIEIYDGTANVWRKMEVSSVTAKWIENNTVVRISYDLQPFDDSW
NPVGPKVEVALDQVRWTMLSAGPDNTQMQELTDQGFAKTTAIISKAENKL
SQLRGVFEREKHALEKERKTEDAAAKMVHDTIIQKTKASCLAESTILAAK
DEKTVEVPSLHRAYLSKWKLYITLPQGVQATNLS*
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mRNA from alignment at C-tenellus_contig7112:1277..5990-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig7112.2.1 ID=mRNA_C-tenellus_contig7112.2.1|Name=mRNA_C-tenellus_contig7112.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4714bp|location=Sequence derived from alignment at C-tenellus_contig7112:1277..5990- (Choristocarpus tenellus KU2346)
GTTGACTCAAGGAAATAAATCAACAAAAAATACACCCCATATGTGTCCAC
GCTCAATGAAAATGCAAAACAACAGTTTTCACCCTAGTGTGAAACCAACA
TTTAACATGTAGAAAGGGATGCAAATGCATTGTATTGATGCATGTTCCAA
GCAGGTCTCTCAACTGGGACTGAGTAATGTTATTCGTACCAGCTCACCTC
TCCATGAATGTATATACATTGCTCCTTCCAACGGAGAGACAGATGTAGCC
CAGGGTTTTGCACACTCTGCCCAAGGCAGAGGGGTGCTGACCTTTGCCAC
CTTTAATCAACAAAAACTTCCCTCAATACTCTGTCAACAGTTCAGGGCAG
CAGAGGGCTACGGGAGTGGAGAGACCAAGACAGGGCAGAGTCTTACCCTT
GACTGTAGCAGATTGGCATCTTCCCCTCCAAAGGTGACAAACAAAAAGGT
CAAGGCACTACTGAAAGATCTTACTGCTGAACAGAAAAGGGTGAGTGAGA
TGCCTGTTGTTCCAATAATACAGTGATGATTCTGTTTTGGGGGTGGTTCC
CATATTCTTTAAAGTAATAGAGAGTCAAAGTATTTAAGAGGATAGGGCCA
AGTCTGTTCGGGATCATAAATCCATGTTGCGATTTTGTCGAATTTTGGCT
ATCGTGTTTGATAGCAAGTGTCAATGCCCTTGCTACAGACACACCTTTCA
CAATAGTATACATTCTAGGTATCTGTGTTCACGCAGAAAACCGAAAAAGG
GCATACCCGTGGGAAGTCAAGTCCCAAATGGACAAACAAGGCAAAATCCC
TACCCTCTTAAATACTTTGGGTCAGGGAACTACCTTCTGAAGTGTTGAAG
TGGGAATGAAGCATGAAAAATCTGAACAAAAAGGATGTGAGCCGAAGAAA
GGAGTTAGCAACGGGGATTATCACAATCGAGGTGAACAGGAACCATGGGC
GCTGGAAGTGAGGTTCAGATTCACCGACATTTTTTCAAAATTTTGTTGAG
AAATTGGATAAGACCCTGGTGGGCTGTTGTTATTAAGAAAATATACTTTG
AGGCGGTATAGGGCCAAGCAGGAGGTGACTAGAACGACTCATATTCGCCA
TATTCGACCTGTCAATATGGCAGGAACTGCGCTCCATGAAAAGCCATGAA
ATATACATCAAACGCAAGCATATGGAACAGCAACCACTGATTGAGAAGGC
TCGCGACCTGGAGGGAAAACGAATTGAGGTATTGGATAGAAAGAGAGTTA
TGTGGGATATGTAAAACACTGGAGATATGATGCATCTGTTTTCTGCTATT
GGGGGATGGAATATGCATGTAGGAACCCTAATCCATAGTGTTCTGAGATG
TGAGTGATGATGGCAACCTGTACACCAAATACGAGTCTGCTCAGATCACC
TGGTGCCATTTTGTGTCATTAGATCTCCTCTCTCCCTACATCATATTATG
AAAGTATTGTTACTGAAGCAGCCTCTTCCCTCTCTTTGACCAGATCTATG
ATGGGACAGCCAATGTGTGGCGCAAGATGGAAGTCTCATCAGTAACTGCA
AAATGGATTGAAAACAACACAGTTGTGCGCATATCCTATGACCTACAGCC
CTTCGACGATTCCTGGAACCCTGTTGGTCCAAAGGTTGAGGTAGCACTTG
ACCAGGTCCGCTGGACGATGTTGTCTGCAGGTCCTGACAACACCCAAATG
CAGGAGCTCACAGGTGAATGGCAGCATCAATCAAGGAGATTTGGCCCTGA
GATGAGTCAAGAGCAATCTTGCCTCTCCAATATCCTAACATTCTAATATT
GTTCTTCCATATGTACAACCAGCCTCAGTAGGTCGACGAGCTTCTGATCA
CTAATTGGTGTTTTCCTCATTACGTTTTACTGCTTTGGGAAGCAGGGGTC
AGGGCTTCAACCTTGAGACCGAAATTACGTGTCAAATGCATATGTGTGAC
GTATTACTCAGGTATCCCATCATTAGAATATTGAGAATAGTTCTTCAATT
CTAGAGCAGTGTGTATTCTGGAGAAGTATGCTGTCAGTTCAGCAGGGTCG
CACTCAATTGAGAAGAGCTATATCTGAGAACTAAGGCAGGGAATTCCATG
CCCAGATAGGAGTTACACCATTTACGCTGGAAGAACCGATAAAGGAGATC
TAGAGTGTGTTTTTTCTTCAAGATAGCATAGGTGAGGGTAAGCAACACTG
CCATTCCATGCCATGAAATATCTCATGCAGAGAGCGAATAAATATATAAA
TGGAGTATCACAGGGCCTACACCAGAGCAATGATGTTCCGAGCACGTGTA
ACACCACAAACCATCAACTTGAGATACCAGAAGATCCTTATAATTCATTC
AACGAATAGATCACCTTGGTCTCTCTTTGCCTCTAGTCACCACGAAAGAT
TGCTCCTGCTAGTCAAGTGAAATGCTATAGAAACCAAAATGTAGCCACAA
ACTGGCAACAGCTGATTCATTGGGCTCAACTGGATTACCTCCCAAGAACT
TTGGTGAGCATTAATTTTTCAAAGGAATCGTCCAAAACGTACAGGAGATT
GTGAGATTATTGACTTCATCTCCAAGTAAACCCTAACTATTCCAGTCTTT
TCTACTGCTTGAAACACTACATCAGTGTAATTCTCTCATACTTGCATTAT
AGTTGGTGCGCCAGAAAAAAGAATAAATAAATGAATAAATAAATAAATGC
TCTCACATAGCACATCTTCGACTCCACCCATACCCTCAGTCTAACACAAA
TTCAACTCAATGTTGATGGCAAAATTCGGACAAGACATATCCTGACCTAA
CCACAGAATTATGACACCATAGTAATCGTGTTTCCAGTCTGTTGGAACTG
CATATCACTCTACCGACCAGTAGTGGCCGGATTCTGTGCTCTTTTTTGCA
TAGCACAGAATATCTCCATTGAACAGGGCAAGGTAGTCTGATAGAGTTCT
ATTTGCTCTTGCTAGCCTAGTGACCCTTTCCTTCCCGATGAAAGATGAAC
CATAAAGAAATAGAGCTATGCTTGGTGTTATGGAATAATTTAAGTTGCTA
AAATTTCTGTCTTGAATGAAGCTACTGCCGGAAACCACGCACTTTGGAGC
CACGATCACTTCCTTACAATTACTTTGAAGCTGCGCTGTTTGGTGTAAAA
CTACAAGAAAAATAATTGAAGGATCCATCAAACATTCGCTTTGGAGTTTT
TTTGCTTGGCTGTTTGACTGTCTGACGATCTGGCTCAACCACTAATTTTT
TCCTGCACGTCAAGGGGGACAAGCTTCTGTGGCAGTGTATCTTTGCTGAG
TAAGTTGAAAATCTGTCTGTGTCTGCATCCATCCTGCATGGTAGGGAGGA
AGCAAGTCCAATATCAAGACATAATAGGGCCTATCGGATGAATAAGGAAA
TGATCCATCGTTCAAATACGGGTCATTGAGATCTTGACCTACATGTAAGC
CCCCCCCCTCTCCTCCCTCCAATGTGTCCCCAACTCAATTTTCAGACCAG
GGGTTTGCCAAAACCACAGCAATAATTAGCAAAGCAGAGAACAAGCTATC
GCAACTGAGAGGCGTCTTCGAACGGGAGAAGCATGCTTTAGAAAAAGAAC
GGAAGACAGAGGATGCTGCTGCTAAAATGGTGCACGATACAATTATTCAG
AAGGTAATCATCACTCTGTAGTGACATCATGTTGTCACTACCGCATTAAC
TATAGGTGACTTTTGAATGGCATGTACCTCTATCAGAATTTGAGCGTTGT
CTGTTTCTACTTGTGTGAAGCATAAAACAATGTTATTAGGAACTGGAGTA
CGCTCTCAGCATGTCCTTCCTTCTACCTTGTCAATCCAGACAAAGGCATC
ATGCCTTGCAGAAAGCACGATCTTGGCTGCTAAGGATGAGAAGACTGTGG
AGGTCCCAAGCCTGCATAGGGCTTACCTCAGCAAGTGGAAATTATACATC
ACTCTGCCACAAGGGGTACAAGCTACCAACTTATCGTGAGAATGATATAC
AATGTGTCCCTGCCTATTCCAAACAACACTGTGCCTGACTCCCTGAAGTG
CATTTTCAAGTGCAGAAGGAGGTATCTCATCATTTCGAGGAGGAAAAATC
GTCAAAGTCTATTTTGGTGTTCTGGATTGTGTGTAAGAAATACCAAACAT
TCCTGGGGCATGCCTATCGCATTGGCTGGACTTTCTCCCATATTTATTTC
CAGCCTTGAACCCTTACTCCTGGAGCCCTCACTCCTGGAGCCCCATGTGG
AATATTGCGAATATTGTGCTTCAAAGTACTCAGTTGCAAGCAATCCTTCT
TTAGATCGAAATCCAGAGTGGTGTATATCAAGTTTGTCTTATGTGGATTA
TGCCCCAAGACTCGTAAGTGGTGGTAAGGAGGTAAAACTATCTCATGCAT
AACATTTTCCCTCCTCTTGCTAAGTCTATCTTAGCCTTTGATTGAGAATA
AGAGGTACTAAGTCAACTCAGTCAAAGGACTTCATGACTCCATATACGTG
TATGTCATTACTCCTAAAGCTCATTATTGCAATGTAGCGTTGCCATTACA
TATAGAGCATGGGGCTCAAAGTATCTGGGGGAAGGTGGCGGCTGTCCATT
TGGGTCAATTCTTTCGTGTCGCGATTTTTGGGTGATTTGGTTTGCATACA
TCGAATGGATAATATAAATGCACTTTTCCTGATTTTGGCCCAAATGGACA
CCCTGATGTAGACC
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Coding sequence (CDS) from alignment at C-tenellus_contig7112:1277..5990-

>mRNA_C-tenellus_contig7112.2.1 ID=mRNA_C-tenellus_contig7112.2.1|Name=mRNA_C-tenellus_contig7112.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1005bp|location=Sequence derived from alignment at C-tenellus_contig7112:1277..5990- (Choristocarpus tenellus KU2346)
ATGCAAATGCATTGTATTGATGCATGTTCCAAGCAGGTCTCTCAACTGGG
ACTGAGTAATGTTATTCGTACCAGCTCACCTCTCCATGAATGTATATACA
TTGCTCCTTCCAACGGAGAGACAGATGTAGCCCAGGGTTTTGCACACTCT
GCCCAAGGCAGAGGGGTGCTGACCTTTGCCACCTTTAATCAACAAAAACT
TCCCTCAATACTCTGTCAACAGTTCAGGGCAGCAGAGGGCTACGGGAGTG
GAGAGACCAAGACAGGGCAGAGTCTTACCCTTGACTGTAGCAGATTGGCA
TCTTCCCCTCCAAAGGTGACAAACAAAAAGGTCAAGGCACTACTGAAAGA
TCTTACTGCTGAACAGAAAAGGGAACTGCGCTCCATGAAAAGCCATGAAA
TATACATCAAACGCAAGCATATGGAACAGCAACCACTGATTGAGAAGGCT
CGCGACCTGGAGGGAAAACGAATTGAGATCTATGATGGGACAGCCAATGT
GTGGCGCAAGATGGAAGTCTCATCAGTAACTGCAAAATGGATTGAAAACA
ACACAGTTGTGCGCATATCCTATGACCTACAGCCCTTCGACGATTCCTGG
AACCCTGTTGGTCCAAAGGTTGAGGTAGCACTTGACCAGGTCCGCTGGAC
GATGTTGTCTGCAGGTCCTGACAACACCCAAATGCAGGAGCTCACAGACC
AGGGGTTTGCCAAAACCACAGCAATAATTAGCAAAGCAGAGAACAAGCTA
TCGCAACTGAGAGGCGTCTTCGAACGGGAGAAGCATGCTTTAGAAAAAGA
ACGGAAGACAGAGGATGCTGCTGCTAAAATGGTGCACGATACAATTATTC
AGAAGACAAAGGCATCATGCCTTGCAGAAAGCACGATCTTGGCTGCTAAG
GATGAGAAGACTGTGGAGGTCCCAAGCCTGCATAGGGCTTACCTCAGCAA
GTGGAAATTATACATCACTCTGCCACAAGGGGTACAAGCTACCAACTTAT
CGTGA
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