|
|
Homology
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: D7FRT4_ECTSI (Nsp1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRT4_ECTSI) HSP 1 Score: 125 bits (313), Expect = 2.110e-28 Identity = 66/91 (72.53%), Postives = 76/91 (83.52%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLEEQ 1346
QPP +YM MTVEEIVNSWN +L+QDA FTNEAVKVS+WD LR+ Q EL +LADDVQKLVLGQQDL R+MK I GEQ+ LD+TL+QLE Q
Sbjct: 156 QPPEQYMNMTVEEIVNSWNVELDQDATTFTNEAVKVSDWDGVLRETQSELFSLADDVQKLVLGQQDLARSMKAIEGEQSHLDKTLDQLEGQ 246
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A6H5JT70_9PHAE (Nsp1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT70_9PHAE) HSP 1 Score: 114 bits (286), Expect = 6.270e-24 Identity = 62/84 (73.81%), Postives = 71/84 (84.52%), Query Frame = 3
Query: 1095 TMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLEEQ 1346
TMTVEEIVNSWN +L+QDA FTNEAVKVS+WD LR+ Q EL +LADDVQKLVLGQQDL R+MK I GEQ+ LD+TL+QLE Q
Sbjct: 319 TMTVEEIVNSWNVELDQDATTFTNEAVKVSDWDVVLRETQSELFSLADDVQKLVLGQQDLARSMKAIEGEQSHLDKTLDQLEGQ 402
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A1V9Z874_9STRA (Nuclear pore glycoprotein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9Z874_9STRA) HSP 1 Score: 92.4 bits (228), Expect = 3.740e-16 Identity = 48/89 (53.93%), Postives = 66/89 (74.16%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
QPPAEY+ TVE+I+N W++QLE AM FTNEAV+VS WD L +NQ++L +LA DV++L + Q++L N+ I+ Q +LD TLE LE
Sbjct: 1285 QPPAEYLGKTVEDIINMWSEQLENHAMAFTNEAVRVSHWDTELMENQKKLGDLAIDVRRLQMAQKELNANLDTISAYQMELDSTLENLE 1373
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A8K1CMM0_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CMM0_PYTOL) HSP 1 Score: 90.9 bits (224), Expect = 5.850e-16 Identity = 47/89 (52.81%), Postives = 67/89 (75.28%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
QPPA+YM T+EEI+N W++QLE++A FTNEAVKVS+WD L D+Q++L LA DV+++ + Q++L+ N+ I Q +L TLEQLE
Sbjct: 322 QPPADYMGKTIEEIINMWSEQLERNADTFTNEAVKVSQWDGELMDSQKKLGELASDVRRIQVAQKELDTNLDTIFAYQMELKSTLEQLE 410
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A067BGQ9_SAPPC (Nsp1_C domain-containing protein (Fragment) n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067BGQ9_SAPPC) HSP 1 Score: 86.3 bits (212), Expect = 3.910e-15 Identity = 46/87 (52.87%), Postives = 63/87 (72.41%), Query Frame = 3
Query: 1080 PAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
PAEY TVE+I+N W++QLE AM FTNEAV+VS WD L +NQ++L +LA DV++L + Q++L N+ I+ Q +LD TLE LE
Sbjct: 114 PAEYKDKTVEDIINMWSEQLENHAMAFTNEAVRVSHWDAELMENQKKLGDLAIDVRRLQMAQKELNANLDTISAYQLELDATLETLE 200
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A484E958_BRELC (Nsp1_C domain-containing protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E958_BRELC) HSP 1 Score: 87.4 bits (215), Expect = 5.680e-15 Identity = 46/88 (52.27%), Postives = 66/88 (75.00%), Query Frame = 3
Query: 1077 PPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
PPAEYM TVE+I+NSW++QLE++A FT EAVKVS+WD + D+Q++L +LA DV+++ + Q +L+ N+ I Q +L TLEQLE
Sbjct: 244 PPAEYMGRTVEDIINSWSEQLERNADTFTTEAVKVSQWDSDVLDSQRKLGDLAGDVRRIQVAQNELDSNLDTIFAYQMELKSTLEQLE 331
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A6A3WIJ5_9STRA (Nsp1_C domain-containing protein n=4 Tax=Phytophthora TaxID=4783 RepID=A0A6A3WIJ5_9STRA) HSP 1 Score: 87.0 bits (214), Expect = 8.460e-15 Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
+PPAEYM T+E+I+N+W++QLE++A FT EAVKVS+WD L D+Q++L ++A DV+++ + Q +L+ N+ I Q +L TLEQLE
Sbjct: 263 KPPAEYMGRTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRQLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLE 351
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: G4Z9S7_PHYSP (Nsp1_C domain-containing protein n=1 Tax=Phytophthora sojae (strain P6497) TaxID=1094619 RepID=G4Z9S7_PHYSP) HSP 1 Score: 87.0 bits (214), Expect = 1.090e-14 Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
+PPAEYM T+E+I+N+W++QLE++A FT EAVKVS+WD L D+Q++L ++A DV+++ + Q +L+ N+ I Q +L TLEQLE
Sbjct: 332 KPPAEYMGRTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRQLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLE 420
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A225WLQ3_9STRA (Nuclear pore glycoprotein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WLQ3_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.110e-14 Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
+PPAEYM T+E+I+N+W++QLE++A FT EAVKVS+WD L D+Q++L ++A DV+++ + Q +L+ N+ I Q +L TLEQLE
Sbjct: 259 KPPAEYMGRTIEDIINTWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGDIAGDVRRIQVAQNELDSNLDTIFAYQMELKSTLEQLE 347
BLAST of mRNA_C-tenellus_contig7101.2.1 vs. uniprot
Match: A0A2P4XQD6_9STRA (Nuclear pore glycoprotein n=2 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4XQD6_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.300e-14 Identity = 44/89 (49.44%), Postives = 67/89 (75.28%), Query Frame = 3
Query: 1074 QPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLE 1340
+PPAEYM T+E+I+N+W++QLE++A FT EAVKVS+WD L D+Q++L ++A DV+++ + Q +L+ N+ I Q +L TLEQLE
Sbjct: 295 KPPAEYMGKTIEDIINAWSEQLERNADTFTTEAVKVSKWDSDLMDSQRKLGDIAGDVRRIQVAQNELDTNLDTIFAYQMELKSTLEQLE 383
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Seed ortholog | 2880.D7FRT4 |
| Preferred name | NUP62 |
| PFAMs | Nsp1_C,Nucleoporin_FG |
| Model size | 1347 |
| Max annot lvl | 2759|Eukaryota |
| KEGG ko | ko:K09585,ko:K14306 |
| KEGG TC | 1.I.1 |
| KEGG Pathway | ko03013,map03013 |
| KEGG Module | M00427 |
| Hectar predicted targeting category | other localisation |
| GOs | GO:0000003,GO:0000054,GO:0000055,GO:0000056,GO:0000070,GO:0000132,GO:0000226,GO:0000278,GO:0000280,GO:0000785,GO:0000819,GO:0000922,GO:0001932,GO:0001933,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003682,GO:0005102,GO:0005198,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005642,GO:0005643,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005819,GO:0005856,GO:0006139,GO:0006351,GO:0006355,GO:0006403,GO:0006405,GO:0006406,GO:0006409,GO:0006469,GO:0006606,GO:0006607,GO:0006611,GO:0006725,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006928,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007059,GO:0007080,GO:0007088,GO:0007098,GO:0007100,GO:0007154,GO:0007163,GO:0007165,GO:0007166,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007292,GO:0007346,GO:0007568,GO:0007569,GO:0008092,GO:0008104,GO:0008134,GO:0008150,GO:0008152,GO:0008219,GO:0008285,GO:0008289,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009755,GO:0009790,GO:0009792,GO:0009889,GO:0009891,GO:0009892,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010389,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010563,GO:0010564,GO:0010604,GO:0010605,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010824,GO:0010825,GO:0010941,GO:0012505,GO:0015031,GO:0015630,GO:0015833,GO:0015931,GO:0016020,GO:0016021,GO:0016032,GO:0016043,GO:0016070,GO:0016477,GO:0016973,GO:0017038,GO:0017056,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019894,GO:0019904,GO:0019953,GO:0022402,GO:0022412,GO:0022414,GO:0022607,GO:0022613,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0030010,GO:0030154,GO:0030159,GO:0030496,GO:0030544,GO:0030717,GO:0031023,GO:0031072,GO:0031090,GO:0031224,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031400,GO:0031490,GO:0031503,GO:0031965,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032182,GO:0032268,GO:0032269,GO:0032386,GO:0032465,GO:0032467,GO:0032501,GO:0032502,GO:0032504,GO:0032535,GO:0032774,GO:0032870,GO:0032879,GO:0032880,GO:0032886,GO:0032947,GO:0032954,GO:0032991,GO:0033036,GO:0033043,GO:0033157,GO:0033365,GO:0033673,GO:0033750,GO:0034399,GO:0034504,GO:0034613,GO:0034641,GO:0034645,GO:0034654,GO:0035257,GO:0040001,GO:0040011,GO:0042058,GO:0042059,GO:0042127,GO:0042169,GO:0042175,GO:0042221,GO:0042254,GO:0042306,GO:0042325,GO:0042326,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043086,GO:0043122,GO:0043123,GO:0043130,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043405,GO:0043407,GO:0043408,GO:0043409,GO:0043549,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044092,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044428,GO:0044430,GO:0044446,GO:0044464,GO:0044613,GO:0044615,GO:0044703,GO:0045184,GO:0045742,GO:0045787,GO:0045840,GO:0045859,GO:0045893,GO:0045931,GO:0045935,GO:0045936,GO:0046483,GO:0046578,GO:0046580,GO:0046599,GO:0046601,GO:0046605,GO:0046607,GO:0046822,GO:0046907,GO:0046966,GO:0048232,GO:0048285,GO:0048468,GO:0048477,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0048609,GO:0048856,GO:0048869,GO:0048870,GO:0050000,GO:0050657,GO:0050658,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051028,GO:0051031,GO:0051049,GO:0051056,GO:0051058,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051170,GO:0051171,GO:0051172,GO:0051173,GO:0051174,GO:0051179,GO:0051223,GO:0051234,GO:0051236,GO:0051246,GO:0051248,GO:0051252,GO:0051254,GO:0051259,GO:0051276,GO:0051291,GO:0051293,GO:0051294,GO:0051299,GO:0051302,GO:0051303,GO:0051310,GO:0051321,GO:0051338,GO:0051348,GO:0051425,GO:0051427,GO:0051493,GO:0051495,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0051674,GO:0051704,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0051879,GO:0060236,GO:0060255,GO:0060341,GO:0060548,GO:0061982,GO:0061988,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070192,GO:0070201,GO:0070206,GO:0070208,GO:0070507,GO:0070727,GO:0070887,GO:0070925,GO:0071166,GO:0071310,GO:0071426,GO:0071427,GO:0071428,GO:0071431,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071900,GO:0071901,GO:0072594,GO:0072686,GO:0080090,GO:0090066,GO:0090068,GO:0090087,GO:0090224,GO:0090304,GO:0090543,GO:0097064,GO:0097159,GO:0097240,GO:0097298,GO:0097659,GO:0098534,GO:0098589,GO:0098805,GO:0098813,GO:0140014,GO:1900180,GO:1901184,GO:1901185,GO:1901186,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1901987,GO:1901990,GO:1902115,GO:1902117,GO:1902412,GO:1902531,GO:1902532,GO:1902533,GO:1902680,GO:1902749,GO:1902850,GO:1903046,GO:1903047,GO:1903436,GO:1903438,GO:1903490,GO:1903506,GO:1903508,GO:1903827,GO:1903829,GO:1904589,GO:1904779,GO:1904781,GO:1990904,GO:2000112,GO:2001141 |
| Exons | 4 |
| Evalue | 1.39e-29 |
| EggNOG OGs | KOG2196@1|root,KOG2196@2759|Eukaryota |
| EC | 5.3.4.1 |
| Description | structural constituent of nuclear pore |
| Cds size | 1179 |
| COG category | S |
| BRITE | ko00000,ko00001,ko00002,ko01000,ko03019,ko03110,ko04131 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680790012.962264-CDS-C-tenellus_contig7101:2243..2321 | 1680790012.962264-CDS-C-tenellus_contig7101:2243..2321 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7101 2244..2321 - |
| 1680790012.9756832-CDS-C-tenellus_contig7101:3978..4068 | 1680790012.9756832-CDS-C-tenellus_contig7101:3978..4068 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7101 3979..4068 - |
| 1680790012.987416-CDS-C-tenellus_contig7101:4570..4655 | 1680790012.987416-CDS-C-tenellus_contig7101:4570..4655 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7101 4571..4655 - |
| 1680790013.0066974-CDS-C-tenellus_contig7101:5354..6280 | 1680790013.0066974-CDS-C-tenellus_contig7101:5354..6280 | Choristocarpus tenellus KU2346 | CDS | C-tenellus_contig7101 5355..6280 - |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1680790013.023228-UTR-C-tenellus_contig7101:6280..6447 | 1680790013.023228-UTR-C-tenellus_contig7101:6280..6447 | Choristocarpus tenellus KU2346 | UTR | C-tenellus_contig7101 6281..6447 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig7101.2.1 >prot_C-tenellus_contig7101.2.1 ID=prot_C-tenellus_contig7101.2.1|Name=mRNA_C-tenellus_contig7101.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=393bp
MFSGFKAPSGGTGGFNFVSTTTPTSAAAPAPATPSFGFGAGAAGSAPATS
GSTGGLFGSASAATPAPAPAASGFSFGGSTAATNPASSAASAASGSSQFS
FGAQAAPTTTATPATAPLFGAQAPAPTPSSGSSFAFSSLAPAPAASQASG
SAPAPVPAASAPAPATNTFSFGGLAPVPAPASTGAAAAPAGGFSFTTPAP
APAPTTTVAPPAAAPAPAATPAAAPAGSGRFLFGGSLGATVSTSTTTAAP
APAAGGGGFSFSGAGGASAAPAAAPGAGALALAPAPGGASNAQQGQQQAE
QEQPPAEYMTMTVEEIVNSWNDQLEQDAMIFTNEAVKVSEWDKALRDNQQ
ELTNLADDVQKLVLGQQDLERNMKVIAGEQNQLDRTLEQLEEQ back to topmRNA from alignment at C-tenellus_contig7101:2244..6447- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_C-tenellus_contig7101.2.1 ID=mRNA_C-tenellus_contig7101.2.1|Name=mRNA_C-tenellus_contig7101.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=4204bp|location=Sequence derived from alignment at C-tenellus_contig7101:2244..6447- (Choristocarpus tenellus KU2346)
CAAGCCTGCTCCCAGAGTTTGCGTCCTCTACGTACTAGAGGGCTTGGTGG
TTTGGTTGCAGATCTCTGTCTTGGAAAAAATAGCTCTTGAAGGTATTGGA
CCCCCATTTAAGTTGCACAAGCGATCTCCACCCTTTTTGTGGAGGGCGTC
AGGAACCCTCATCTACAATGTTCAGCGGCTTCAAGGCTCCCTCAGGGGGG
ACTGGGGGATTCAACTTCGTATCAACAACCACACCCACATCAGCCGCAGC
TCCTGCGCCTGCGACACCATCATTTGGGTTTGGGGCGGGGGCTGCAGGCT
CAGCACCTGCGACATCTGGATCGACTGGGGGTTTATTTGGCTCGGCCTCA
GCCGCCACTCCTGCTCCTGCACCGGCGGCTTCAGGGTTCTCATTCGGAGG
CTCAACCGCTGCAACTAATCCAGCCTCATCAGCTGCATCCGCTGCATCCG
GCTCATCGCAGTTTAGCTTTGGAGCCCAAGCTGCACCTACCACAACAGCC
ACCCCTGCAACTGCACCCTTATTTGGTGCACAAGCTCCTGCCCCGACTCC
TTCCTCTGGCTCATCCTTCGCCTTTTCTTCCCTAGCACCTGCTCCTGCAG
CTTCCCAGGCCTCAGGGAGTGCACCTGCTCCCGTCCCTGCCGCCTCGGCA
CCAGCACCTGCAACCAATACCTTTTCGTTTGGCGGTCTTGCCCCCGTCCC
TGCCCCTGCCTCAACAGGCGCGGCAGCTGCCCCAGCGGGAGGATTTTCTT
TTACAACACCAGCACCAGCACCGGCTCCTACTACGACGGTTGCTCCTCCA
GCCGCCGCCCCGGCACCTGCCGCAACACCTGCTGCTGCACCAGCTGGCTC
TGGTAGATTTTTGTTTGGGGGATCGCTAGGCGCTACTGTTTCAACCAGTA
CAACAACAGCAGCCCCTGCACCTGCGGCAGGAGGAGGTGGATTTTCCTTT
AGTGGTGCCGGCGGTGCAAGTGCTGCCCCAGCGGCAGCACCAGGGGCTGG
AGCACTGGCATTGGCGCCTGCACCAGGAGGAGCGTCTAACGCGCAACAGG
GGCAGCAACAAGCTGAGCAGGAACAGCCTCCAGCTGAGTACATGTGAGTG
TTGGAGACTATGATCGGAGATTATCAAAGGAAAGGTTTACTGACCTTCGG
AGTGAGGTAGAAGAGAAGTTTAGACAGATGGTAAACAGATACAACTATCT
CTCTATATATTGCAGATTTTGCAGTGGTGCAAGAGAGGAACCATTGATGA
AACATCTATTGGGCAAGATGCACATATTTTTAGTGTTTTTTCATATTTTG
CAATTTTTTTGTATAAGCACCTACTCAGGAGTGCATGTTATGCACATTCG
CACCGTCTATAGTTGTACAGATTGTTTAGGTTTCCACATATTTTTGTTTC
TTCAAGAAAGTACGCATGTGTTGTGTAACTCACAGTCGTTTGCACTTGAC
ACGCCTTCTCCTTCCACCTTGTTACTCCTCAAAAAAAATACAAGACAAAT
ATTGTAAGAACCTCCTACTCCTGGATTATACGAGCCTTGAAGAGTGTGCA
ATGCTACATGTGAATGATTTACCCTCCCTTCCTCCCTGTGTCAGAACACC
ACTACAGTATACGTGTGTAGTGTATACAGCCTGCACACACCTTACCAGGA
TGCGTAACTGCTTTACTGAGAGCTGCACTCTATACAGTGTTGTTGGGGCT
CGTTACAATCCTCTGCTGGTAACCTGTTGTGGACAAAAATACCCCCATTT
TCTTGTTCTTATTAATTTTTTTTAATGTTCTGCATATTTCAGGACCATGA
CTGTTGAGGAAATTGTGAACAGTTGGAATGATCAGCTGGAGCAGGATGCC
ATGATCTTCACTAATGAAGCTGTAAAGGTGATGAGACACTTGCCTTGGGG
AGACATATGCTTGCTTACACAGTTCTGTCATGATATAATAATAACCCTTG
GCTCCTCCCTCCACCCTTGCATCCTTTCCTCGTGCACTTTTGGTCTGGTG
ATGAGAGGATGGCCAATGTCAAAACACTTCTTCAGGACTGATATGGCCGA
TTGTCCTTCCTCAACCACCTTCATAGTTCAGTCAACCGTGTCACCTAAGA
GCCTGCCCACGTGTCCCACTCTCAAACTTCCTGGGTTTTTTTTCTTGTCT
AGATGATGGGAACGATGTTATCTATGGCGGTTAGGTTTTTCCAAAAATAT
GAGATTATAAAAATAAGTCTACGTACGAAAAATGAATAAACGACTTGCTA
TAGGATACAACCACATGTGTACTGAGTGGACTCCATCCGGAGTATTGTAC
TGAAGTGTGGAGTGCAGTTATTACTGAACAAGCGAGATAGATATTGATTA
TCACTGCGTGGAAATGAATTATCGCAAAGGTGTCTGAATGGGATAAGGCG
CTGAGGGACAATCAGCAAGAATTGACAAACCTGGCCGATGATGTCCAAAA
GCTTGTTCTGGGACAACAGGTGTGTTTCTCGAATGAGGAGTGAAGGGAAG
GGGAAGTGGAATGTACCATGAGTGTGAGTTGTAATGGAGTGAAAGGGGAG
GTGTGCGTGTATGTACGAATTTATGTATGTATTTATGTATGTATTATGTA
TGTATTATTATGTATGTATGTATGTACTGATTTATGTATATATGTACATA
TATATGTATGTATGTATTATTATGTATTATTTTTGTATGTATGCCTGTCT
GTATGTATTGTGTATGTATGTATGTATGCCTGTCTGTATGTATTGTGTAT
GTATGTATGCCTGTCTGCATGTATTGTGTATTGTGTATGTATGTATGTAT
GATGTTGACGAGGTGTTGGCGTTCTCTTTACGCATGAATCCATGTGTTGG
GTGTGAAGGGGGCAAAATGGGTGTAGATGACGCAACAAACATCGCGGGAA
ATGCCAGGGCGTTTATTTTAGTGTGGGCGTTGGTGATGGAGAATGGCAAG
AGAGCGCTTACTTGTGCTGCGCTGCACCAGGGGGGGGGGGATTGTAGTGG
CGCAAAGGGGGGGATTGAGTAGGTTAAGTGTTGCGAATCGTTTAGATTGT
CTAACCCTAACCCTAACCCTACTACGGTTCGAATTTCACTGTGAGTCAAA
GTATCTTAGAGGGTAGAGCTGCGTCCATTTGGGGGGCCAAAGGTCAATGT
TACTATTTTGATGTTATTTTGCCTATCGTGTTGGTTAGGAAGTTTCAATA
TCCTTACTCTGGACACACGTTTCATAACGTACACATTTTAACTACTCCTA
AACTTTGAAGTGGGAAGATGTCATAAAATAACCTATGGGAAGCCAAGCCC
CAAATGGACAAACAGGGCAAAACTCGTACCCTCTAAGATACTTTCACTCT
GTGATTAACAAAAACCGTCAATGGAGGGGTAATTCTTTACTGTTATTTTT
GGTGGGAACTTGTGCTGTATGTGTTGCTTGTGGAGATTGGCGATTTGTGT
CTCTCTTTGTGTGCTGTGCTGTGTACAATTTTTAAAATTGGAATTGGAGT
CAACGTGTCTTAGAGGGCAGGGGCCCGTCCGTCTGTTTGGGGGTTTCAAG
ATCCTATGTTGTGTTTTTTTTCAATGTAATTTTGGCTATTGCGTTTTGTT
TGTAAGTGTCAATGTCCTTGTTCTGTACACACCTTTTTGTGTATTTTTTA
CTTGCTCCGAAACATTTCTGAGTAGGTAAATAAATTTCATTAGAAAAAAC
ACACGGGAAGTCAAGTCCCAAACGAACAAACAGGGCCAAATTCATGCACT
TTAAGATACTTTCACTCTTAATGATGTTTGAGGGTGTTACGATTTTTTCC
AGTTGAGTAAGTTTGTGCTCTAAAATGCTTTGAATCTAGATTCTCAATGA
TGCTAGGGTGTGTGTTGGAGGGGAGGGAAGAGTCTATTGCCCTCACCTCA
AGGCGTAGCTTTAGTTCGAGACTGTTGTTTCATACAATTGTGCCGTTGAT
GTAGTATGCGTTTTGAAGTACGTGTGCATATGTAGGTGGTGTTGTGCGTC
ACTTCCGTTGATTGATTACGGTTGCACTCTGCAAGACCGTGCCGGGGCGT
CTCTTGAACACATGAGGTACTTGCTGCTGCTGTCATATTTCGATCAACCC
CGAGTATGACCTATCCATCATGGCAGGACTTGGAGAGGAATATGAAGGTG
ATTGCAGGAGAACAAAACCAGCTGGATAGGACGCTGGAGCAGCTGGAAGA
GCAG back to topCoding sequence (CDS) from alignment at C-tenellus_contig7101:2244..6447- >mRNA_C-tenellus_contig7101.2.1 ID=mRNA_C-tenellus_contig7101.2.1|Name=mRNA_C-tenellus_contig7101.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1179bp|location=Sequence derived from alignment at C-tenellus_contig7101:2244..6447- (Choristocarpus tenellus KU2346)
ATGTTCAGCGGCTTCAAGGCTCCCTCAGGGGGGACTGGGGGATTCAACTT
CGTATCAACAACCACACCCACATCAGCCGCAGCTCCTGCGCCTGCGACAC
CATCATTTGGGTTTGGGGCGGGGGCTGCAGGCTCAGCACCTGCGACATCT
GGATCGACTGGGGGTTTATTTGGCTCGGCCTCAGCCGCCACTCCTGCTCC
TGCACCGGCGGCTTCAGGGTTCTCATTCGGAGGCTCAACCGCTGCAACTA
ATCCAGCCTCATCAGCTGCATCCGCTGCATCCGGCTCATCGCAGTTTAGC
TTTGGAGCCCAAGCTGCACCTACCACAACAGCCACCCCTGCAACTGCACC
CTTATTTGGTGCACAAGCTCCTGCCCCGACTCCTTCCTCTGGCTCATCCT
TCGCCTTTTCTTCCCTAGCACCTGCTCCTGCAGCTTCCCAGGCCTCAGGG
AGTGCACCTGCTCCCGTCCCTGCCGCCTCGGCACCAGCACCTGCAACCAA
TACCTTTTCGTTTGGCGGTCTTGCCCCCGTCCCTGCCCCTGCCTCAACAG
GCGCGGCAGCTGCCCCAGCGGGAGGATTTTCTTTTACAACACCAGCACCA
GCACCGGCTCCTACTACGACGGTTGCTCCTCCAGCCGCCGCCCCGGCACC
TGCCGCAACACCTGCTGCTGCACCAGCTGGCTCTGGTAGATTTTTGTTTG
GGGGATCGCTAGGCGCTACTGTTTCAACCAGTACAACAACAGCAGCCCCT
GCACCTGCGGCAGGAGGAGGTGGATTTTCCTTTAGTGGTGCCGGCGGTGC
AAGTGCTGCCCCAGCGGCAGCACCAGGGGCTGGAGCACTGGCATTGGCGC
CTGCACCAGGAGGAGCGTCTAACGCGCAACAGGGGCAGCAACAAGCTGAG
CAGGAACAGCCTCCAGCTGAGTACATGACCATGACTGTTGAGGAAATTGT
GAACAGTTGGAATGATCAGCTGGAGCAGGATGCCATGATCTTCACTAATG
AAGCTGTAAAGGTGTCTGAATGGGATAAGGCGCTGAGGGACAATCAGCAA
GAATTGACAAACCTGGCCGATGATGTCCAAAAGCTTGTTCTGGGACAACA
GGACTTGGAGAGGAATATGAAGGTGATTGCAGGAGAACAAAACCAGCTGG
ATAGGACGCTGGAGCAGCTGGAAGAGCAG back to top
|