mRNA_C-tenellus_contig6764.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6764.2.1
Unique NamemRNA_C-tenellus_contig6764.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6764.2.1 vs. uniprot
Match: D8LQ19_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LQ19_ECTSI)

HSP 1 Score: 119 bits (297), Expect = 2.010e-26
Identity = 93/294 (31.63%), Postives = 128/294 (43.54%), Query Frame = 1 
Query:  142 MRDFERNASIKTRDALLENGDLL-CRAE-SIVASVKERDALDSKPSS------LRSRFIPGDPFAREEADVDTWARHFTYLSVVPATSFQRRLGDDEGAVQRAEARPNLEGGLGVCDL-------ITKETNFPDVEAGDPVVIG----REMRPDRRQS----MPYPENPRTEEIIESHGILEEYIAYDYTPPAIQ-------------------------------------------RWTEK-----------STDGSRHGQCSGLTTPQQELKEQIMDHLFDELWKKLVPDL 792
            MR+FER+++  TR+ALL+N  LL C    S  A   + D   + P S      +  R++PGDPFA EEADV  WA+HFTYLSVVP    +R  G D      AE R N   G G+ +          ++    D E G    +     +++ P+   +        E P+ EE+  SHG+ EEY+AYD  PP                                               W              ST G  H   + L TPQ+EL+++IMD LFDELW+++ PDL
Sbjct:   57 MREFERSSAENTREALLDNDALLLCEPPASANAGSADNDGRQTSPLSPXXXXXVPLRYVPGDPFANEEADVGAWAKHFTYLSVVPT---ERGEGGD------AEKRSNDNAGGGLLERGPVAEPPPVRDVMETDEETGGVAAVEGSRIQDLTPEEAAAELAGRRLEEMPQGEEVFASHGVYEEYLAYDCRPPGFDDVTSPGGETMGPGEEDPRLAAKGSGAWAVTGVVPNANSAVGQGAWVSNNAASEPPALGASTTGGSHRVVARLDTPQRELRQEIMDRLFDELWERITPDL 341
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6764.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQ19_ECTSI2.010e-2631.63Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6764contigC-tenellus_contig6764:2639..3840 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog106582.XP_004551524.1
Preferred nameFAM149B1
PFAMsDUF3719
Model size1202
Max annot lvl33208|Metazoa
Hectar predicted targeting categoryother localisation
Exons1
Evalue0.000654
EggNOG OGs2CC41@1|root,2QVD4@2759|Eukaryota,39A6K@33154|Opisthokonta,3BFZ3@33208|Metazoa,3D0SM@33213|Bilateria,484EX@7711|Chordata,497W4@7742|Vertebrata,49QKD@7898|Actinopterygii
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-15_001280.1
DescriptionFamily with sequence similarity 149, member B1
Cds size771
COG categoryS
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.3653605-UTR-C-tenellus_contig6764:2638..30091680789990.3653605-UTR-C-tenellus_contig6764:2638..3009Choristocarpus tenellus KU2346UTRC-tenellus_contig6764 2639..3009 -
1680789990.3937528-UTR-C-tenellus_contig6764:3780..38401680789990.3937528-UTR-C-tenellus_contig6764:3780..3840Choristocarpus tenellus KU2346UTRC-tenellus_contig6764 3781..3840 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.382255-CDS-C-tenellus_contig6764:3009..37801680789990.382255-CDS-C-tenellus_contig6764:3009..3780Choristocarpus tenellus KU2346CDSC-tenellus_contig6764 3010..3780 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6764.2.1prot_C-tenellus_contig6764.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6764 3010..3780 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6764.2.1

>prot_C-tenellus_contig6764.2.1 ID=prot_C-tenellus_contig6764.2.1|Name=mRNA_C-tenellus_contig6764.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=257bp
MQDEDGGAGGKGDGWDSSSNDGEWGGGMRDFERNASIKTRDALLENGDLL
CRAESIVASVKERDALDSKPSSLRSRFIPGDPFAREEADVDTWARHFTYL
SVVPATSFQRRLGDDEGAVQRAEARPNLEGGLGVCDLITKETNFPDVEAG
DPVVIGREMRPDRRQSMPYPENPRTEEIIESHGILEEYIAYDYTPPAIQR
WTEKSTDGSRHGQCSGLTTPQQELKEQIMDHLFDELWKKLVPDLSRAMIC
GREKDV*
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mRNA from alignment at C-tenellus_contig6764:2639..3840-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6764.2.1 ID=mRNA_C-tenellus_contig6764.2.1|Name=mRNA_C-tenellus_contig6764.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1202bp|location=Sequence derived from alignment at C-tenellus_contig6764:2639..3840- (Choristocarpus tenellus KU2346)
GCTGTCGAGGCAACCCCCACAGTTAGTCTTTGGGATGATGATGGCAGTGG
AGAAGGGGAAATGCAAGATGAGGATGGAGGAGCAGGAGGGAAGGGCGACG
GTTGGGACAGCAGTAGCAATGATGGAGAGTGGGGAGGTGGGATGCGCGAT
TTCGAGAGGAATGCCTCCATTAAGACAAGGGATGCACTGTTGGAGAATGG
AGACCTCCTCTGCCGTGCAGAATCAATCGTTGCATCTGTCAAAGAGCGCG
ATGCGTTGGACTCGAAACCTAGTTCTCTACGCTCACGATTCATTCCAGGT
GACCCCTTTGCACGGGAGGAGGCGGATGTTGACACATGGGCGCGCCATTT
CACGTACTTGTCCGTTGTGCCTGCAACAAGCTTCCAGCGAAGGCTAGGCG
ACGATGAAGGGGCTGTTCAGAGGGCTGAGGCACGGCCAAACCTTGAGGGG
GGATTGGGGGTGTGTGACCTCATTACAAAGGAGACCAATTTCCCCGATGT
AGAAGCTGGCGATCCAGTGGTGATCGGGCGCGAGATGAGGCCAGATAGAA
GGCAGTCAATGCCTTACCCGGAGAACCCACGGACCGAAGAAATCATAGAG
AGCCACGGAATCCTTGAGGAATACATCGCATACGACTATACGCCGCCAGC
GATACAGAGATGGACAGAGAAATCCACGGATGGAAGTAGGCATGGGCAAT
GTTCTGGTCTCACCACTCCCCAGCAAGAGCTGAAGGAGCAAATTATGGAC
CATCTGTTCGATGAGCTATGGAAAAAGTTAGTGCCTGACCTAAGCAGGGC
TATGATTTGTGGAAGGGAAAAGGATGTGTAAAAGATTTAGAAAGTCAAGT
CATACTCATCGCCGCCTGTTTGGCGCATATAGGTTGAGGTGGTGATACGA
CGGTAGGGATTTGTAGTGAAGTATACCACCGTTAAAGAGCTTAAAACCAT
CATTAGAGAGGATCTGTACCTTGCAGAACACTTTCTGCTGTGGTTGATGA
TCTACCTTGGCCCTTCAAGACAATAGAACTGTACCACTTTAAACCATATG
ATAGGACACCACCAATAGTGAACAAATGTCCGATCTCATACAAACATGAG
ACTTCATGGGTGCATCAAGATACAGTGATAACAGTTGGAAGATGTAGCAC
ACTGGTGCATGCCTGGAAGATCCAAGGGAAGTCAAGCACAGATTAAGCAG
TT
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Coding sequence (CDS) from alignment at C-tenellus_contig6764:2639..3840-

>mRNA_C-tenellus_contig6764.2.1 ID=mRNA_C-tenellus_contig6764.2.1|Name=mRNA_C-tenellus_contig6764.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=771bp|location=Sequence derived from alignment at C-tenellus_contig6764:2639..3840- (Choristocarpus tenellus KU2346)
ATGCAAGATGAGGATGGAGGAGCAGGAGGGAAGGGCGACGGTTGGGACAG
CAGTAGCAATGATGGAGAGTGGGGAGGTGGGATGCGCGATTTCGAGAGGA
ATGCCTCCATTAAGACAAGGGATGCACTGTTGGAGAATGGAGACCTCCTC
TGCCGTGCAGAATCAATCGTTGCATCTGTCAAAGAGCGCGATGCGTTGGA
CTCGAAACCTAGTTCTCTACGCTCACGATTCATTCCAGGTGACCCCTTTG
CACGGGAGGAGGCGGATGTTGACACATGGGCGCGCCATTTCACGTACTTG
TCCGTTGTGCCTGCAACAAGCTTCCAGCGAAGGCTAGGCGACGATGAAGG
GGCTGTTCAGAGGGCTGAGGCACGGCCAAACCTTGAGGGGGGATTGGGGG
TGTGTGACCTCATTACAAAGGAGACCAATTTCCCCGATGTAGAAGCTGGC
GATCCAGTGGTGATCGGGCGCGAGATGAGGCCAGATAGAAGGCAGTCAAT
GCCTTACCCGGAGAACCCACGGACCGAAGAAATCATAGAGAGCCACGGAA
TCCTTGAGGAATACATCGCATACGACTATACGCCGCCAGCGATACAGAGA
TGGACAGAGAAATCCACGGATGGAAGTAGGCATGGGCAATGTTCTGGTCT
CACCACTCCCCAGCAAGAGCTGAAGGAGCAAATTATGGACCATCTGTTCG
ATGAGCTATGGAAAAAGTTAGTGCCTGACCTAAGCAGGGCTATGATTTGT
GGAAGGGAAAAGGATGTGTAA
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