mRNA_C-tenellus_contig6759.4.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6759.4.1
Unique NamemRNA_C-tenellus_contig6759.4.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6759.4.1 vs. uniprot
Match: A0A836CI77_9STRA (DENN domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CI77_9STRA)

HSP 1 Score: 123 bits (308), Expect = 1.030e-29
Identity = 64/111 (57.66%), Postives = 79/111 (71.17%), Query Frame = 1 
Query:   34 KAKRRWCVLDATRLTYYRSRSTTRVKGHVIMDPRQVYLVTPPFVVRPGNTSTEHDAVALVCS---SMPPEM--GTMVIRAEQMGKHDHWVRALAARLTPKEHQDRMVAIYG 351
            K KRRWC+LDAT+L+YYRSRS TRVKG++  +P  V LVTPPF V  G+ +TEHD VALV +   + P E   GT+VIRAE M  H   VRAL A+LTP+EH   M ++YG
Sbjct: 4017 KVKRRWCILDATKLSYYRSRSKTRVKGYIPFEPASVSLVTPPFAVHSGHATTEHDCVALVWNQEAAAPGESVPGTLVIRAEDMTTHRMLVRALKAKLTPREHLTMMRSLYG 4127
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BLAST of mRNA_C-tenellus_contig6759.4.1 vs. uniprot
Match: D7FYV2_ECTSI (PH domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYV2_ECTSI)

HSP 1 Score: 113 bits (282), Expect = 3.270e-26
Identity = 66/138 (47.83%), Postives = 81/138 (58.70%), Query Frame = 1 
Query:    1 LAIKAAGLRTVKAKRRWCVLDATRLTYYRSRSTTRVKGHVIMDPRQVYLVTPPFVV--RPG------------------NTSTEHDAVALVCSSMPPEMGTMVIRAEQMGKHDHWVRALAARLTPKEHQDRMVAIYGG 354
            +AI+A      K ++RWCVLDATRLT +R+R+ TRVK  V +DP +V LVTPPF    R G                  + + E DAVALV    P E GT+VIRAE +     WVRALAARLT +EH  RM  +YGG
Sbjct: 4708 MAIRARANGAPKVRKRWCVLDATRLTLFRTRTKTRVKESVQLDPSRVALVTPPFTPWGRAGGGVXXXXXXXXXXXXXGEDVTNERDAVALVVFRNPTETGTLVIRAESVEAQHVWVRALAARLTSREHHARMAELYGG 4845
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6759.4.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A836CI77_9STRA1.030e-2957.66DENN domain-containing protein n=1 Tax=Tribonema m... [more]
D7FYV2_ECTSI3.270e-2647.83PH domain-containing protein n=1 Tax=Ectocarpus si... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6759contigC-tenellus_contig6759:3069..4782 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size442
Hectar predicted targeting categoryother localisation
Exons3
Cds size237
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.1427596-UTR-C-tenellus_contig6759:3068..31041680789990.1427596-UTR-C-tenellus_contig6759:3068..3104Choristocarpus tenellus KU2346UTRC-tenellus_contig6759 3069..3104 +
1680789990.152431-UTR-C-tenellus_contig6759:3466..35531680789990.152431-UTR-C-tenellus_contig6759:3466..3553Choristocarpus tenellus KU2346UTRC-tenellus_contig6759 3467..3553 +
1680789990.1873717-UTR-C-tenellus_contig6759:4700..47821680789990.1873717-UTR-C-tenellus_contig6759:4700..4782Choristocarpus tenellus KU2346UTRC-tenellus_contig6759 4701..4782 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789990.1636934-CDS-C-tenellus_contig6759:3553..36941680789990.1636934-CDS-C-tenellus_contig6759:3553..3694Choristocarpus tenellus KU2346CDSC-tenellus_contig6759 3554..3694 +
1680789990.1781633-CDS-C-tenellus_contig6759:4604..47001680789990.1781633-CDS-C-tenellus_contig6759:4604..4700Choristocarpus tenellus KU2346CDSC-tenellus_contig6759 4605..4700 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6759.4.1prot_C-tenellus_contig6759.4.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6759 3554..4700 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6759.4.1

>prot_C-tenellus_contig6759.4.1 ID=prot_C-tenellus_contig6759.4.1|Name=mRNA_C-tenellus_contig6759.4.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=79bp
MDPRQVYLVTPPFVVRPGNTSTEHDAVALVCSSMPPEMGTMVIRAEQMGK
HDHWVRALAARLTPKEHQDRMVAIYGGD*
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mRNA from alignment at C-tenellus_contig6759:3069..4782+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6759.4.1 ID=mRNA_C-tenellus_contig6759.4.1|Name=mRNA_C-tenellus_contig6759.4.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=1714bp|location=Sequence derived from alignment at C-tenellus_contig6759:3069..4782+ (Choristocarpus tenellus KU2346)
CTTGCCATCAAAGCTGCAGGGTTGAGGACAGTGAAGGTACATACAAGGGT
CAACCAAAATGGTTTTTATTACCCATGTAGTCAGTAGCATGATTTGGGGA
GGTTGTAAATCCCATGCGACTTTGGAGGGGCATTTCATGCTACCTGACAC
TTGGTGTATTTATGGTGTGTTTATGCTGTGTTTATGCTGGCGCTTCTCGA
AAATGTTTGTCTGTTTTCCCAGGGCAACAAGTTTACCTCAAGGTTGAGGT
GCCTATGAGCACACTTTAGTGTGTAAAAAGGGTCCATGTGTCGCATTGAT
GAGTATATATATATAAACCCAAACTACCGTACTAAAGGTAGCATTCTCAT
TCTCCCCCACCTACCCTCTGCTGTTGTTGAATTGCAACTGCTATGAAGGC
AAAGCGGCGATGGTGTGTGTTAGATGCTACTCGATTAACATATTACAGAA
GTCGTAGCACAACTAGGGTGAAAGGACACGTCATCATGGACCCCAGGCAG
GTGTACCTAGTAACACCACCTTTTGTGGTCCGCCCTGGAAATACTTCTAC
GGAACATGATGCTGTGGCGCTGGTGTGCTCGTCTATGCCCCCAGAGATGG
GTACTATGGTCATACGAGCAGAACAGGCATGTGATATCTGTGATAGCAGA
ACGTTTTGTCTTGCTTTCATCCTTTTCCCCCAGCCCAAATTCCTTCATCA
CAACCTTGCTTCAGTTGTGTGTGTGTGTGTATGTGTTTGTGTGTGTGTGA
CTTAGTTGCTGATGTTTGCATGAAGCAGTACAGTCGTTCTTTTATGCTTT
GACATTTTTTCTAGAATTGGGTCAGATTGAAGAGGTTAAGTGACGAGTTA
TCCATGTGTATGGGGTCTAGATGGACGGTGTTACAACTTCCATGGTGGTA
TAAATATATCTCATGTGGGGTCAGGAGATGGGAGAATGCCCAATGTTATC
TAGACAACATACTTGTACTGACTTTTGCTTGTGGTTGGGTGACAGGACAT
GCAGTGTAGTTGAGAACTCCAGTCGAAAGTGAACAGTACTGATAGGGTTC
TATCAAAGTCTCAATTTCTGGGATGTTTAATTTGGTTTGTCTTGGTGTGC
CCTTCCACAAAGTGTTAAGCGAGAGATAGCTCACTAAAGATGACCATCTG
CTGAGGACAGTGAGGTCACCATGTACTTCCCAGTGCTCCCTCTGCCATCA
TCTTGCTTTTGTTCCAACCAGACTGATGTATATATATATATTGCCGCTGC
CCAGTCCCGTTGTTACTATATCTGCCAGATATATCTTCCTTGTGTACTCG
ACACTCAAACCTAACACTACCTAACACAGAGTTCTTTCACAATCTGTAAC
TAAGCTGTCCATTCCGTGTTTTGCTTCACCACCAACAGTGCAGTGCACCA
GAGTCTTGCCATGTTCATCCCCATCCCTTTCCCCCCCCCAAACATCTCTT
CTTATCCTTTACTGTATTGACTGAGATGCGAGACTCGTACAGTCCTAACT
GTGCTGCTGCTGTACCCTCACTATTTGTTATGGCAGATGGGGAAACATGA
CCACTGGGTGCGTGCTCTTGCGGCAAGGCTAACTCCAAAAGAGCACCAAG
ATCGAATGGTGGCGATCTATGGGGGGGATTGATTAGTGTAGAGAGATTTC
ATGTATTGTGTTCGTAGGGGGGGTGGGGAAGGGGAGGTGGTGGTAGAGGG
CCAATTGTTATTCC
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Coding sequence (CDS) from alignment at C-tenellus_contig6759:3069..4782+

>mRNA_C-tenellus_contig6759.4.1 ID=mRNA_C-tenellus_contig6759.4.1|Name=mRNA_C-tenellus_contig6759.4.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=237bp|location=Sequence derived from alignment at C-tenellus_contig6759:3069..4782+ (Choristocarpus tenellus KU2346)
ATGGACCCCAGGCAGGTGTACCTAGTAACACCACCTTTTGTGGTCCGCCC
TGGAAATACTTCTACGGAACATGATGCTGTGGCGCTGGTGTGCTCGTCTA
TGCCCCCAGAGATGGGTACTATGGTCATACGAGCAGAACAGATGGGGAAA
CATGACCACTGGGTGCGTGCTCTTGCGGCAAGGCTAACTCCAAAAGAGCA
CCAAGATCGAATGGTGGCGATCTATGGGGGGGATTGA
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