mRNA_C-tenellus_contig6741.2.1 (mRNA) Choristocarpus tenellus KU2346
Overview
Homology
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A6H5JNV3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNV3_9PHAE) HSP 1 Score: 131 bits (330), Expect = 1.090e-30 Identity = 67/103 (65.05%), Postives = 84/103 (81.55%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPK 309 +YK D++KKDNKAK KA E+KEVKMSYKIE HDY VR++NAQKF+ QGHRVR+++ FRGREQSHMDLG L+ ++T DL+ A E RREGNRL +I++PK Sbjct: 184 KYKQDRRKKDNKAKHKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVEPK-RREGNRLSMIVFPK 285
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A836C915_9STRA (Translation initiation factor IF-3, C-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C915_9STRA) HSP 1 Score: 129 bits (324), Expect = 4.380e-30 Identity = 65/103 (63.11%), Postives = 82/103 (79.61%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPK 309 +Y S+KKKKD+K AK E+KEVKMSYKIE HDY VR++NA+KFI+QG RV+V++QFRGREQ HMDLG L+++I D + T +G P+REGNRL LIL PK Sbjct: 163 KYMSEKKKKDSKKNAKQSEMKEVKMSYKIEDHDYQVRLRNAKKFIAQGDRVKVVVQFRGREQQHMDLGHELLTKIVADCEGTVATDGRPKREGNRLSLILAPK 265
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A7S2H9R6_9STRA (Translation initiation factor IF-3 n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2H9R6_9STRA) HSP 1 Score: 105 bits (261), Expect = 7.410e-22 Identity = 54/102 (52.94%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYP 306 +Y+ ++KKKDN K K E+KEVKMSYKI+ HDY VR K A KF+ G RV+ ++QFRGREQ H++LG+ L+ +++ED K A ++ PRREGNR+V+ + P Sbjct: 126 KYQMERKKKDNLKKTKVNEMKEVKMSYKIDTHDYMVRQKAAIKFLKSGSRVKAVVQFRGREQQHINLGQELLKKLSEDCKEFATSD-RPRREGNRVVMFINP 226
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A6V1LHA9_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1LHA9_HETAK) HSP 1 Score: 103 bits (257), Expect = 3.780e-21 Identity = 55/102 (53.92%), Postives = 76/102 (74.51%), Query Frame = 1 Query: 4 YKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPK 309 Y KK+K+ + +A ELKEVKMSYKIE+HDY VR K A KF+ GHRV++++QFRGREQ HMDLG++L+ +++ D++ A E RREGNRL ++L P+ Sbjct: 125 YNQQKKQKEQMSAQRAKELKEVKMSYKIEKHDYEVRAKAATKFLKGGHRVKLLVQFRGREQQHMDLGRDLLGRLSGDVEDLALPEPI-RREGNRLTMLLTPR 225
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: W7TKZ8_9STRA (Translation initiation factor if-3 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TKZ8_9STRA) HSP 1 Score: 104 bits (260), Expect = 6.790e-21 Identity = 54/104 (51.92%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPKQ 312 +Y +KKKK+ AK E+KEVKMSYKIE HDY VR+K +F+ +G +V+V++QFRGREQ H+DLG L+ ++ DLK A EG RREG RL+ + PK+ Sbjct: 230 KYSLEKKKKEXXXXAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A7C6IVA8_9FIRM (Translation initiation factor IF-3 n=1 Tax=Thermoanaerobacterales bacterium TaxID=2304039 RepID=A0A7C6IVA8_9FIRM) HSP 1 Score: 99.0 bits (245), Expect = 2.240e-20 Identity = 48/104 (46.15%), Postives = 77/104 (74.04%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPKQ 312 +Y+ K++K+ + K K + +KE++MS KIE+HD+ VR+KNA KFIS+G +V+V ++FRGRE +H LG +++++ E+LK AN E P+ EG +V++L PKQ Sbjct: 70 KYEQSKREKEARKKQKVINIKEIRMSPKIEEHDFQVRVKNAHKFISEGDKVKVTVRFRGREITHTALGYEVLNKMAEELKEIANVEKMPKVEGKNMVMVLAPKQ 173
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A7S3KWM0_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3KWM0_9STRA) HSP 1 Score: 102 bits (253), Expect = 3.400e-20 Identity = 57/103 (55.34%), Postives = 71/103 (68.93%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPK 309 RY +KK K+ K +KA ELKEVKMSYKI+ HDYSVR KNA KF+ QG RV+ + FRGRE H +LG L+ ++ E+L A EG P+REG L LIL P+ Sbjct: 124 RYMQEKKAKEIKKNSKASELKEVKMSYKIDIHDYSVRKKNAAKFLQQGDRVKCTVMFRGREVQHDNLGFELLDKMAEELSNLAAKEGRPKREGRNLSLILGPR 226
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A7V6XL51_9FIRM (Translation initiation factor IF-3 n=1 Tax=Thermoanaerobacterales bacterium TaxID=2304039 RepID=A0A7V6XL51_9FIRM) HSP 1 Score: 98.2 bits (243), Expect = 4.160e-20 Identity = 48/103 (46.60%), Postives = 76/103 (73.79%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPK 309 +Y+ KK+K+ + K + + +KE++MS KIE+HD VR+KNA KFIS+G +V+V ++FRGRE +H LG+ +++++ ED+K A+ E PR EG +V+IL PK Sbjct: 70 KYEQSKKEKEARKKQRVINVKEIRMSPKIEEHDLQVRVKNASKFISEGDKVKVTVRFRGREIAHTTLGREILTKMAEDMKDIASVEKKPRVEGRNMVMILAPK 172
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: A0A8A0RR01_9FIRM (Translation initiation factor IF-3 n=2 Tax=Koleobacter methoxysyntrophicus TaxID=2751313 RepID=A0A8A0RR01_9FIRM) HSP 1 Score: 97.8 bits (242), Expect = 4.730e-20 Identity = 47/104 (45.19%), Postives = 77/104 (74.04%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPKQ 312 +Y+ KK+K+ + K K + +KE++MS KIE+HD+ VR++NAQ+FI+ G +V+V ++FRGRE +H DLG+ ++ ++ E+L+ A E P+ EG +V+IL PKQ Sbjct: 61 KYEQSKKEKEARKKQKIINIKEIRMSPKIEEHDFQVRVRNAQRFINDGDKVKVTIRFRGREIAHTDLGQEVLEKMAEELRDIAIVEKKPKVEGKNMVMILSPKQ 164
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Match: K9XZX6_STAC7 (Translation initiation factor IF-3 n=2 Tax=Stanieria TaxID=102115 RepID=K9XZX6_STAC7) HSP 1 Score: 96.7 bits (239), Expect = 1.510e-19 Identity = 46/104 (44.23%), Postives = 73/104 (70.19%), Query Frame = 1 Query: 1 RYKSDKKKKDNKAKAKAMELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLGKNLMSQITEDLKATANAEGNPRREGNRLVLILYPKQ 312 +Y+ DKK K+ K K ++KEVKM YKIE+HDY+VR+KNA++F+ G +V+ + FRGRE H DL + L+ ++ DL++ A + P+REG ++++L PK+ Sbjct: 73 KYEQDKKLKEAKKKQHNADVKEVKMRYKIEEHDYNVRVKNAERFLKSGDKVKATVSFRGREIQHADLAEELLKRMATDLESVAEVQQAPKREGRNMMMLLSPKK 176 The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6741.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_C-tenellus_contig6741.2.1 >prot_C-tenellus_contig6741.2.1 ID=prot_C-tenellus_contig6741.2.1|Name=mRNA_C-tenellus_contig6741.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=91bp MELKEVKMSYKIEQHDYSVRIKNAQKFISQGHRVRVILQFRGREQSHMDLback to top mRNA from alignment at C-tenellus_contig6741:3237..6933- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_C-tenellus_contig6741.2.1 ID=mRNA_C-tenellus_contig6741.2.1|Name=mRNA_C-tenellus_contig6741.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3697bp|location=Sequence derived from alignment at C-tenellus_contig6741:3237..6933- (Choristocarpus tenellus KU2346)back to top Coding sequence (CDS) from alignment at C-tenellus_contig6741:3237..6933- >mRNA_C-tenellus_contig6741.2.1 ID=mRNA_C-tenellus_contig6741.2.1|Name=mRNA_C-tenellus_contig6741.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=273bp|location=Sequence derived from alignment at C-tenellus_contig6741:3237..6933- (Choristocarpus tenellus KU2346)back to top |