mRNA_C-tenellus_contig6722.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig6722.1.1
Unique NamemRNA_C-tenellus_contig6722.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A182H1F4_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182H1F4_AEDAL)

HSP 1 Score: 78.2 bits (191), Expect = 2.400e-11
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1 
Query: 1747 PRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVFD 1968
            P+  R A +SP  + W +A AEE+  +  NN W  A LPPGR+A+G KW+ K K +  GE+VR+KARLVA+ F 
Sbjct:   55 PQNYREAMASPHAESWKKAMAEELESIHANNTWTLADLPPGRKAVGCKWVFKMKRDINGEIVRFKARLVAQGFS 128
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A2K3KML6_TRIPR (Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KML6_TRIPR)

HSP 1 Score: 71.2 bits (173), Expect = 1.010e-10
Identity = 37/77 (48.05%), Postives = 47/77 (61.04%), Query Frame = 1 
Query: 1729 MNSLQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAK 1959
            ++SL  P   + A   P   LW +A AEE+  L   N W    LPPG+RAIG++W++K KT   G V RYKARLVAK
Sbjct:   93 IHSLSEPSSYKEASLDP---LWQKAMAEELVALHKTNTWDLVPLPPGKRAIGSRWVYKIKTKSDGSVERYKARLVAK 166
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: UPI00044168C4 (hypothetical protein n=1 Tax=Punctularia strigosozonata (strain HHB-11173) TaxID=741275 RepID=UPI00044168C4)

HSP 1 Score: 67.4 bits (163), Expect = 2.000e-10
Identity = 32/69 (46.38%), Postives = 40/69 (57.97%), Query Frame = 1 
Query: 1747 PRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLV 1953
            PR  R A   P+ DLW +   EE+   + N  W    LPPGR+AIG++W+ K K    G V RYKARLV
Sbjct:    1 PRSFREAMKRPDSDLWYKVAMEEIEAHIANGTWELVQLPPGRKAIGSRWVFKIKRKADGSVERYKARLV 69
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: UPI000904DB28 (uncharacterized protein LOC109220059 n=1 Tax=Nicotiana attenuata TaxID=49451 RepID=UPI000904DB28)

HSP 1 Score: 68.6 bits (166), Expect = 2.140e-10
Identity = 34/79 (43.04%), Postives = 48/79 (60.76%), Query Frame = 1 
Query: 1729 MNSLQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVF 1965
            +N  ++P+  + A SS +   W+ A  +EM  ++ NN WV   LP G +AIG KW+ +RK N  G V  +KARLVAK F
Sbjct:   11 LNVEEDPKTFQEAMSSGDAAFWNEAVDDEMDSIISNNTWVLVDLPLGSKAIGCKWVFRRKYNTDGFVQTFKARLVAKGF 89
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: Q8WRX5_ANOGA (Pol polyprotein (Fragment) n=2 Tax=Anopheles gambiae TaxID=7165 RepID=Q8WRX5_ANOGA)

HSP 1 Score: 75.1 bits (183), Expect = 3.250e-10
Identity = 37/76 (48.68%), Postives = 48/76 (63.16%), Query Frame = 1 
Query: 1747 PRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVFDNL 1974
            PR    A S P+ DLW RA  EE+  L  N  W  A LP  R+A+G+KW+ KRK +  G++V+YKARLVAK F  +
Sbjct:  429 PRTFEEAMSCPDRDLWKRAMEEEIKSLHENATWEIASLPKDRKAVGSKWVFKRKMDGDGKIVQYKARLVAKGFSQV 504
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BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A182GDL1_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GDL1_AEDAL)

HSP 1 Score: 71.6 bits (174), Expect = 6.140e-10
Identity = 36/80 (45.00%), Postives = 46/80 (57.50%), Query Frame = 1 
Query: 1729 MNSLQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVFD 1968
            M   + P     A  S E DLW  A  EE   L+ N  WV A LP GR+AIG+KW+ K+K +  G V ++KARLVA+ F 
Sbjct:    3 MTVEEEPSSYEEAVRSSESDLWKAAMQEEYDSLMENGTWVLAELPAGRKAIGSKWVFKKKEDSAGNVCKFKARLVAQGFS 82
[Close]
BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A182GIT5_AEDAL (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Aedes albopictus TaxID=7160 RepID=A0A182GIT5_AEDAL)

HSP 1 Score: 73.2 bits (178), Expect = 7.990e-10
Identity = 35/63 (55.56%), Postives = 43/63 (68.25%), Query Frame = 1 
Query: 1777 PECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVF 1965
            PE +LW  A  +EM+ L  N  W    LPPGR+A+G KWI KRK ++ G VVRYKARLVA+ F
Sbjct:    4 PEAELWKAAMDDEMTSLRENGTWQLTDLPPGRKAVGCKWIFKRKLDEDGNVVRYKARLVAQGF 66
[Close]
BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: UPI00195390E8 (uncharacterized protein LOC120416629 n=1 Tax=Culex pipiens pallens TaxID=42434 RepID=UPI00195390E8)

HSP 1 Score: 73.9 bits (180), Expect = 1.040e-9
Identity = 33/81 (40.74%), Postives = 50/81 (61.73%), Query Frame = 1 
Query: 1726 RMNSLQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVFD 1968
            R + L  PR    A +SP+ + W +A  +E+  +  N  W    LPPGR+A+G+KW++K K +  G V+R+KARLVA+ F 
Sbjct: 3933 RDDPLAEPRTYAEAMASPDAERWKQAMVDELESIKANETWTLVDLPPGRKAVGSKWVYKIKRDADGRVLRFKARLVAQGFS 4013
[Close]
BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A1W7R6D9_AEDAL (Putative polyprotein (Fragment) n=1 Tax=Aedes albopictus TaxID=7160 RepID=A0A1W7R6D9_AEDAL)

HSP 1 Score: 72.8 bits (177), Expect = 1.550e-9
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 1 
Query: 1747 PRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAKVF 1965
            P+    A +SPE D W  A AEEM+ L+  + W    LP  R+AIG++W++KRK +  G+VVR+KARLVA+ F
Sbjct:  644 PKSYAEALASPESDKWKAAMAEEMASLMEKDTWDVVQLPADRKAIGSRWVYKRKESANGDVVRFKARLVAQGF 716
[Close]
BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Match: A0A0J7KHD5_LASNI (Retrotransposon ty1-copia subclass n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7KHD5_LASNI)

HSP 1 Score: 72.4 bits (176), Expect = 2.280e-9
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1 
Query: 1738 LQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRAIGTKWIHKRKTNKFGEVVRYKARLVAK 1959
            L  P+    A   P+   W +A  EE++ L+ N  W EA LPPGR+AI  KW+ K K    GE+VRYKARLVA+
Sbjct:  485 LDEPKTYGEAILRPDGATWQKAVDEELASLMKNGTWCEADLPPGRQAISAKWVFKLKRGPSGEIVRYKARLVAR 558
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig6722.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A182H1F4_AEDAL2.400e-1148.65Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2K3KML6_TRIPR1.010e-1048.05Gag-pol polyprotein (Fragment) n=1 Tax=Trifolium p... [more]
UPI00044168C42.000e-1046.38hypothetical protein n=1 Tax=Punctularia strigosoz... [more]
UPI000904DB282.140e-1043.04uncharacterized protein LOC109220059 n=1 Tax=Nicot... [more]
Q8WRX5_ANOGA3.250e-1048.68Pol polyprotein (Fragment) n=2 Tax=Anopheles gambi... [more]
A0A182GDL1_AEDAL6.140e-1045.00Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A182GIT5_AEDAL7.990e-1055.56Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI00195390E81.040e-940.74uncharacterized protein LOC120416629 n=1 Tax=Culex... [more]
A0A1W7R6D9_AEDAL1.550e-947.95Putative polyprotein (Fragment) n=1 Tax=Aedes albo... [more]
A0A0J7KHD5_LASNI2.280e-947.30Retrotransposon ty1-copia subclass n=1 Tax=Lasius ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig6722contigC-tenellus_contig6722:4320..6418 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Seed ortholog28532.XP_010555836.1
PFAMsABC_membrane,ABC_tran
Model size2099
Max annot lvl33090|Viridiplantae
KEGG koko:K05666
KEGG TC3.A.1.208.2
KEGG Pathwayko01523,ko01524,ko02010,ko04976,map01523,map01524,map02010,map04976
Hectar predicted targeting categoryother localisation
Exons1
Evalue3.05e-12
EggNOG OGsCOG1132@1|root,COG2801@1|root,KOG0017@2759|Eukaryota,KOG0054@2759|Eukaryota,37R7X@33090|Viridiplantae
DescriptionABC transporter C family member 10-like
Cds size255
COG categoryQ
BRITEko00000,ko00001,ko02000
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.6139233-UTR-C-tenellus_contig6722:4319..44351680789987.6139233-UTR-C-tenellus_contig6722:4319..4435Choristocarpus tenellus KU2346UTRC-tenellus_contig6722 4320..4435 -
1680789987.640697-UTR-C-tenellus_contig6722:4690..64181680789987.640697-UTR-C-tenellus_contig6722:4690..6418Choristocarpus tenellus KU2346UTRC-tenellus_contig6722 4691..6418 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789987.631011-CDS-C-tenellus_contig6722:4435..46901680789987.631011-CDS-C-tenellus_contig6722:4435..4690Choristocarpus tenellus KU2346CDSC-tenellus_contig6722 4436..4690 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig6722.1.1prot_C-tenellus_contig6722.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig6722 4436..4690 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig6722.1.1

>prot_C-tenellus_contig6722.1.1 ID=prot_C-tenellus_contig6722.1.1|Name=mRNA_C-tenellus_contig6722.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=85bp
MNSLQNPRLLRAAHSSPECDLWDRARAEEMSGLLLNNVWVEAVLPPGRRA
IGTKWIHKRKTNKFGEVVRYKARLVAKVFDNLRV*
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mRNA from alignment at C-tenellus_contig6722:4320..6418-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig6722.1.1 ID=mRNA_C-tenellus_contig6722.1.1|Name=mRNA_C-tenellus_contig6722.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2099bp|location=Sequence derived from alignment at C-tenellus_contig6722:4320..6418- (Choristocarpus tenellus KU2346)
TGGATGGTTGACAGGCAATTAATAATTCAGTGTGTGCTTTACCATGTAAT
TCAACTGCTAGCTTCCGGCGACGAGCCTCATGTTAGCCAAGCTTCTCAAC
ATGCTTAAGCGCTTATTCCAAACTCTGGCCAGGGGAGGCGAAGCCAGACT
GGTTTGTTTTGAATTGGCATAGCACCACACATGGCTTCTGATGGGACCAA
CACCGAACTCCTCCAGCTCTCGGACAACAATTATGCGGACTGGTTCGCTA
CAACGCGCGCATTTTTGGGTGCTAAGGGGGACATTGATGAGGCACTGGAG
TATAGGAGGATACCCATCAGAGTTGGTGACATCGAATTCATTAAGGGCGA
AGATGTCAGTGAAGATGAAGTCACCAAGGCCAAGAAGGCATATGACGTCC
TGCTGAGGAGCACCAGCGGAATTTACCAGTGTATAGTCCGGAATGCTGCC
TCACCTTCAGGAGCCTGGCAACAACTACGAGAACACTTCCTTATTCAATC
AGATGAGGAAATAGTCCGACTCCAAAGGAAGGTCATGACGGTCAAGATGC
CTAGGGGATCAGATCCCCAAATCACCTTCACTATGATGCTGGACTGGGTT
GGCCAGATGGCGATAATGGGGCATGTGATGTCCGAGCAAGTCTTAGGAAT
CGCCATGCTGGATTGTTTGGATGAGGACTATCAGATAACCAAACACTATC
TCCAGCACCTTAACAAGGAGGAGCGTTGGAGGACTACTATTCAACAAGCC
GCTCGTTCGCGCTATTTCTCGCTCGAACGAGAAATAGGAGACTGTGGAGA
GCCTGGTGGCGCTCTAGCCGCGAGGAACTCAAGAAGGGCTAGCCTAGGTG
GCAGCCGTGGTACGACTGATCACCGTACATACCCTGGGATGAGAGGATCA
TCCCAGAAGACAGGAAAGCATGCAGATTCCTATACATATAAAGGATTGTG
TTACAGGAAAGCACGCAGATTCCTCTACTTATAAAGGACTGTGTTACAGC
TGCGGGAAGAATGGCCACCCGTTCGAGCTGTTTGCTCTCAGAGGAGGGCA
GGACCACCGAAGTCGGTCGGAAGATCATATCACCAGAGGGCGAATCCGTC
AGAGTCGGCGAGAGTACTAGCTGGATCAGAGGAACCGGCTAAAACTGGAA
GGAAGTTCAAGACCATGTTAGCCAATGTGGCTGATAATGGCAAGGTGAGA
TTGAATGCTCTCGAAACGTGAATTTTGATTCGGGTGCTTCCAACAGTGTA
ACTAAAGACTTGCAGTATATGTAAGACTTCACCACATGTCCACAAGGCCA
CAACATGACCGTGGCTGACGGCACATCAATACCCATTATGGGGTATGGCA
AGATTGATTTAAATTTCAATGTTGGCCACGATGAGTCGGTGCATGTTACT
CTGACGTCTGTTGCACTTGTCCTGAAAGTAGCCTTCAATCTTCTCTCTTC
ACCTTCTGCTAGTAGGGATAAGGAAGTGGATAGCAATGATAGTGATGATG
ATGGGGTGGATGAGACCAAGGACAGCCAATGTGAAAGGGAACTACGACGA
CTCAGCATTGGCAATGGTGAAGACAACATTCTTCCCCACGGTACCAGATC
AGGCAATGATCCTACTTCCGCCTATGCTGCTGTTTTTAACATGCCAATTT
TTATTATTTGTTTGTCTGTTTCCATAGAGACTACCCTTGTGTTGTGTGCG
AGTGATGATTCTATTAGAGTGTTAGCGGATGAATTCCCTCCAGAACCCAA
GACTGTTAAGAGCAGCACATAGCTCTCCTGAATGTGATTTATGGGATCGA
GCTAGAGCAGAAGAGATGTCTGGTTTGTTATTGAATAATGTTTGGGTGGA
GGCCGTATTACCCCCTGGACGCAGGGCTATAGGCACTAAATGGATTCACA
AGCGTAAGACCAACAAATTTGGTGAGGTAGTTAGATACAAGGCACGTTTG
GTAGCAAAGGTTTTCGACAACTTGAGGGTTTAGATTATCAAGATACCTTT
GCACCAACACCGTCCCCTACATCTTTGAGAATGGTTTTAGTTTTAGCTGC
AGACAAGGATTGGAAATTGAAACATTGGGATGTGAAACAAGCATTTATA
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Coding sequence (CDS) from alignment at C-tenellus_contig6722:4320..6418-

>mRNA_C-tenellus_contig6722.1.1 ID=mRNA_C-tenellus_contig6722.1.1|Name=mRNA_C-tenellus_contig6722.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=255bp|location=Sequence derived from alignment at C-tenellus_contig6722:4320..6418- (Choristocarpus tenellus KU2346)
ATGAATTCCCTCCAGAACCCAAGACTGTTAAGAGCAGCACATAGCTCTCC
TGAATGTGATTTATGGGATCGAGCTAGAGCAGAAGAGATGTCTGGTTTGT
TATTGAATAATGTTTGGGTGGAGGCCGTATTACCCCCTGGACGCAGGGCT
ATAGGCACTAAATGGATTCACAAGCGTAAGACCAACAAATTTGGTGAGGT
AGTTAGATACAAGGCACGTTTGGTAGCAAAGGTTTTCGACAACTTGAGGG
TTTAG
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