mRNA_C-tenellus_contig11044.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11044.1.1
Unique NamemRNA_C-tenellus_contig11044.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11044.1.1 vs. uniprot
Match: D7FS79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS79_ECTSI)

HSP 1 Score: 84.3 bits (207), Expect = 1.290e-18
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 KVPLGDILDVERSGSVVWLKCLHLGTVGFEANLPGDSEIFYYAMDALLDLRCSL 162
            ++PL D+LDVER G VVW+KCLHLGT+GFEA+L  D+ +FY AMD+LLD RC +
Sbjct:  160 QIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGV 213
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BLAST of mRNA_C-tenellus_contig11044.1.1 vs. uniprot
Match: A0A6H5K6H5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6H5_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 9.200e-18
Identity = 35/54 (64.81%), Postives = 45/54 (83.33%), Query Frame = 1 
Query:    1 KVPLGDILDVERSGSVVWLKCLHLGTVGFEANLPGDSEIFYYAMDALLDLRCSL 162
            ++PL D+LDVER G VVW+KCLHLGT+GFEA+L  D+ +FY AMD+LLD RC +
Sbjct:  385 QIPLRDVLDVERRGKVVWVKCLHLGTIGFEASLETDAVVFYLAMDSLLDTRCGV 438
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BLAST of mRNA_C-tenellus_contig11044.1.1 vs. uniprot
Match: A0A835ZK67_9STRA (SKA2 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK67_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.640e-12
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:    4 VPLGDILDVERSGSVVWLKCLHLGTVGFEANLPGDSEIFYYAMDALLDLR 153
            VPL D+LDVER GS+VW+K LH+G  G E  L  D+E+ Y AMDALLD R
Sbjct:  382 VPLSDVLDVEREGSIVWVKTLHMGEFGLEMPLQEDAELVYLAMDALLDER 431
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11044.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FS79_ECTSI1.290e-1864.81Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6H5_9PHAE9.200e-1864.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZK67_9STRA2.640e-1262.00SKA2 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11044contigC-tenellus_contig11044:35..196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size162
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-01_000860.1
Cds size162
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.5232399-CDS-C-tenellus_contig11044:34..1961680789160.5232399-CDS-C-tenellus_contig11044:34..196Choristocarpus tenellus KU2346CDSC-tenellus_contig11044 35..196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11044.1.1prot_C-tenellus_contig11044.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11044 35..196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11044.1.1

>prot_C-tenellus_contig11044.1.1 ID=prot_C-tenellus_contig11044.1.1|Name=mRNA_C-tenellus_contig11044.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=54bp
KVPLGDILDVERSGSVVWLKCLHLGTVGFEANLPGDSEIFYYAMDALLDL
RCSL
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mRNA from alignment at C-tenellus_contig11044:35..196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11044.1.1 ID=mRNA_C-tenellus_contig11044.1.1|Name=mRNA_C-tenellus_contig11044.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=162bp|location=Sequence derived from alignment at C-tenellus_contig11044:35..196+ (Choristocarpus tenellus KU2346)
AAGGTGCCTCTTGGAGATATTCTAGATGTTGAGAGGTCCGGCTCTGTGGT
GTGGCTCAAGTGCCTTCACCTAGGAACAGTTGGTTTTGAGGCCAATCTAC
CTGGGGACTCAGAAATATTCTATTATGCTATGGACGCCCTCCTTGACCTG
CGATGCAGCCTG
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Coding sequence (CDS) from alignment at C-tenellus_contig11044:35..196+

>mRNA_C-tenellus_contig11044.1.1 ID=mRNA_C-tenellus_contig11044.1.1|Name=mRNA_C-tenellus_contig11044.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=162bp|location=Sequence derived from alignment at C-tenellus_contig11044:35..196+ (Choristocarpus tenellus KU2346)
AAGGTGCCTCTTGGAGATATTCTAGATGTTGAGAGGTCCGGCTCTGTGGT
GTGGCTCAAGTGCCTTCACCTAGGAACAGTTGGTTTTGAGGCCAATCTAC
CTGGGGACTCAGAAATATTCTATTATGCTATGGACGCCCTCCTTGACCTG
CGATGCAGCCTG
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