mRNA_C-tenellus_contig11043.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11043.1.1
Unique NamemRNA_C-tenellus_contig11043.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11043.1.1 vs. uniprot
Match: D8LEW9_ECTSI (USP domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEW9_ECTSI)

HSP 1 Score: 310 bits (793), Expect = 2.880e-89
Identity = 227/530 (42.83%), Postives = 295/530 (55.66%), Query Frame = 1 
Query:  100 TATDECHNGQWLGGSLGIRQAAERRWMWQGFTAKQFKAFAQEFPPSLEISLDEIHARVEDIKCRSCRDRLLKALDKGMTRGGFSLNKVVKLTACSSSSRTVGSEGGEDSQVSPVLISEANSANKTKPEIQEEGIKATGGS------METGRGGKVR-------------------GAL---NTLRIRAPVTQDLLKQVVGVAQAAAAVE--ADPLGEISFGRAVRDMSEGDWLLTYHPPEGAR----GAVNSAGGTGRGSLSVPMITRRQXXXXXXXXXXXE---ERDLFDQLERSAAARDKATQRCRVILSSTGVVSAQEDGLVGTGTG-------------TVAGSVQGLDWNPQFAPRLQEAESALVDWLTQLTWVLHTLTLPCTLAFLTDTRETGEGDAKGS-DFRRS----DELWTAYEETVARLLELTLEARREHLKEQPQPMTIALCFAAHNRASAAALLDRKRLELSTLHDLVARSLLSAEKRSLLQRAEEARRRWGGALVAEGFRALDELAERVLKTRLQV 1524
            T  D CHNG+ L  S  IR +A ++W W G++AKQF++FAQEFPP L++  +E+  ++EDIKC +CRDRLLKAL +G+ RGGF L K+VKL AC S     G E   D    P    E  +   T P     G    GG       +  GR G V                    G++   + LRIRAPVT DLL+QV+GV Q AA V   AD  G+     A  D+   +WL TY  P+ A      A ++AGG  RG+          XXXXXXXXXX     ER+ +  +ER   ARD A + C VI +S G                            ++AG+   ++WNPQFAPRLQEAE+A+V+WLT+LT  LH LT   TLAF+ +  + GE  + GS D   S    ++LWTAYE++V R L+LTLEARRE L+EQ QPM +ALCF A NR  A+ LL RKR E++ LH      + + + R LLQRAE AR++W   L+ E   ALD+L ERVL+ RLQV
Sbjct:  130 TGGDHCHNGESLCRSPFIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDVGAEEVRLKIEDIKCSTCRDRLLKALGRGLRRGGFPLTKLVKLAACRS-----GEEEHGDQSKRP---EETCTPTSTPPAAALGGRGDAGGDGRAPVVLSNGRSGVVEXXXXXXXXXXXXXXXXNASGSILPSDRLRIRAPVTPDLLRQVIGVVQQAALVPPAADAPGKREGAAA--DLLAEEWLSTYPAPDPALLEAGEAKSNAGGGLRGTXXXXXXXXXXXXXXXXXXXXRSDSAERNPWALMERVDRARDNAFKCCGVIEASAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXSMAGN---MEWNPQFAPRLQEAEAAIVEWLTELTMALHGLTFQFTLAFIGE--DDGEDGSTGSSDLAESTALAEDLWTAYEDSVKRQLDLTLEARREQLREQSQPMGLALCFTAQNRVLASELLGRKRTEMAALHQATIGVMAAPKLRPLLQRAERARQKWSSLLLPEDVYALDDLVERVLRARLQV 644
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BLAST of mRNA_C-tenellus_contig11043.1.1 vs. uniprot
Match: A0A6H5KBH4_9PHAE (USP domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBH4_9PHAE)

HSP 1 Score: 301 bits (771), Expect = 2.590e-86
Identity = 220/522 (42.15%), Postives = 284/522 (54.41%), Query Frame = 1 
Query:  100 TATDECHNGQWLGGSLGIRQAAERRWMWQGFTAKQFKAFAQEFPPSLEISLDEIHARVEDIKCRSCRDRLLKALDKGMTRGGFSLNKVVKLTACSSSSR---------------TVGSEG--GEDSQVSPVLISEANSANKTKPEIQEEGIKATGGSMETGRGGKVRGALNTLRIRAPVTQDLLKQVVGVAQAAAAVEADPLGEISFGR--AVRDMSEGDWLLTYHPPEGA---RGAVNSAGGTGRGSLSVPMITRRQXXXXXXXXXXXE------------ERDLFDQLERSAAARDKATQRCRVILSSTGVVSAQEDGLVGTGTG---------TVAGSVQGLDWNPQFAPRLQEAESALVDWLTQLTWVLHTLTLPCTLAFLTDTRETGEGDAKGSDFRRS----DELWTAYEETVARLLELTLEARREHLKEQPQPMTIALCFAAHNRASAAALLDRKRLELSTLHDLVARSLLSAEKRSLLQRAEEARRRWGGALVAEGFRALDELAERVLKTRLQV 1524
            T  D CHNG+ L  S  IR +A ++W W G++AKQF++FAQEFPP L+I  +E+  ++EDIKC +CRDRLL AL +G+ RGGF L K+VKL AC S S+                 G  G  G D +  PV+++  N  +    E Q                G +  + + LRIRAPVT DLL+QV+GV Q AA V   P  + S  R  A  D+   +WL TY  P+ A    G   S  G               XXXXXXXXXXX             ER+ +  +ER   ARD A + C VI  S                          ++AG+++   WNPQFAPRLQEAE+A+V+WLT LT  LH LT   TLAF+ +  +  +G    SD   S    ++LWTAYEE+V R LELTLEARRE L+EQ QPM +ALCF A NR  A+ LL RKR E++ LH      + + + R LLQRAE AR++W   L+ E   ALD+L ERVL+ RLQV
Sbjct:  126 TRGDHCHNGESLCRSPYIRSSAGKQWSWLGYSAKQFRSFAQEFPPMLDIGAEEVRLKIEDIKCSTCRDRLLMALGRGLRRGGFPLTKLVKLAACRSGSKRPEETCTPTSTPPAAATGGRGDPGSDGRA-PVVLT--NGQSGVGEESQXXXXXXXXXXXXXNASGNILPS-DRLRIRAPVTPDLLRQVIGVVQQAALVP--PAADASGKREGAAADLLAEEWLSTYPAPDPALLQAGEAKSNAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSDSAERNPWALMERVDRARDNAMKCCGVIEDSAXXXXXXXXXXXXXXXXXXXXXXXXXSMAGNIE---WNPQFAPRLQEAEAAIVEWLTDLTMALHGLTFQFTLAFIGED-DGQDGSTGSSDLAESTALAEDLWTAYEESVKRQLELTLEARREQLREQSQPMGLALCFTAQNRVLASELLGRKRTEMNALHQATIGVMAAPKLRPLLQRAERARQKWSSLLLPEDVYALDDLVERVLRARLQV 637
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11043.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LEW9_ECTSI2.880e-8942.83USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KBH4_9PHAE2.590e-8642.15USP domain-containing protein n=1 Tax=Ectocarpus s... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11043contigC-tenellus_contig11043:670..2709 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D8LEW9
PFAMsUCH
Model size1542
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons4
Evalue4.72e-90
EggNOG OGsKOG1887@1|root,KOG1887@2759|Eukaryota
Descriptionprotein deubiquitination
Cds size1542
COG categoryS
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789160.4440694-CDS-C-tenellus_contig11043:669..10251680789160.4440694-CDS-C-tenellus_contig11043:669..1025Choristocarpus tenellus KU2346CDSC-tenellus_contig11043 670..1025 -
1680789160.462444-CDS-C-tenellus_contig11043:1190..17331680789160.462444-CDS-C-tenellus_contig11043:1190..1733Choristocarpus tenellus KU2346CDSC-tenellus_contig11043 1191..1733 -
1680789160.4774146-CDS-C-tenellus_contig11043:1802..21871680789160.4774146-CDS-C-tenellus_contig11043:1802..2187Choristocarpus tenellus KU2346CDSC-tenellus_contig11043 1803..2187 -
1680789160.4885442-CDS-C-tenellus_contig11043:2451..27091680789160.4885442-CDS-C-tenellus_contig11043:2451..2709Choristocarpus tenellus KU2346CDSC-tenellus_contig11043 2452..2709 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11043.1.1prot_C-tenellus_contig11043.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11043 670..2709 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11043.1.1

>prot_C-tenellus_contig11043.1.1 ID=prot_C-tenellus_contig11043.1.1|Name=mRNA_C-tenellus_contig11043.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=514bp
GGDSRRGCDSGSSEVDRQIPVSGDRDRERDRDKTATDECHNGQWLGGSLG
IRQAAERRWMWQGFTAKQFKAFAQEFPPSLEISLDEIHARVEDIKCRSCR
DRLLKALDKGMTRGGFSLNKVVKLTACSSSSRTVGSEGGEDSQVSPVLIS
EANSANKTKPEIQEEGIKATGGSMETGRGGKVRGALNTLRIRAPVTQDLL
KQVVGVAQAAAAVEADPLGEISFGRAVRDMSEGDWLLTYHPPEGARGAVN
SAGGTGRGSLSVPMITRRQQQTRGGDGGGGEERDLFDQLERSAAARDKAT
QRCRVILSSTGVVSAQEDGLVGTGTGTVAGSVQGLDWNPQFAPRLQEAES
ALVDWLTQLTWVLHTLTLPCTLAFLTDTRETGEGDAKGSDFRRSDELWTA
YEETVARLLELTLEARREHLKEQPQPMTIALCFAAHNRASAAALLDRKRL
ELSTLHDLVARSLLSAEKRSLLQRAEEARRRWGGALVAEGFRALDELAER
VLKTRLQVTITGG*
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mRNA from alignment at C-tenellus_contig11043:670..2709-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11043.1.1 ID=mRNA_C-tenellus_contig11043.1.1|Name=mRNA_C-tenellus_contig11043.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2040bp|location=Sequence derived from alignment at C-tenellus_contig11043:670..2709- (Choristocarpus tenellus KU2346)
GGTGGAGATTCTCGCCGAGGATGCGATTCGGGATCCTCCGAGGTGGATCG
TCAGATACCGGTGTCGGGGGATAGAGATAGAGAGAGGGATAGGGACAAGA
CTGCTACCGACGAGTGCCACAACGGCCAGTGGCTTGGGGGCAGCCTTGGC
ATTCGTCAGGCAGCGGAGAGGAGGTGGATGTGGCAGGGATTTACGGCGAA
ACAGTTCAAGGCATTCGCACAGGAATTCCCCCCATCACTGGAAATTAGTC
TTGATGAGGTAGGTGGAAGCCAATTCATTACTCCTCTTTTCCTTGTTTGA
AGGTCGTCAAATGGCTCGTTCGTGGTGGATTTTTTTTGTTGGTAATGGAC
CGATGTTTTATTCAAACTCCCCTTTGCATGAATGGGATGGATGAACTCAT
TTTCCATGCTCATCATCTCTTCTACTAATTGTTGTGTTGTATGTTTATTT
GACGTCGTTTCAGACTTTTGATCCTAAATCTAACTCTCTCGGTCTTCCAC
AATGTCTTGGGGTCTCGTCCAGATTCATGCGCGGGTGGAGGATATCAAGT
GCCGGAGTTGTCGGGATCGCCTACTTAAAGCCCTGGACAAGGGCATGACC
AGAGGAGGTTTTTCTCTGAACAAGGTGGTGAAGCTCACAGCCTGCAGCTC
GTCCAGCAGGACCGTTGGTAGTGAGGGGGGGGAGGATTCACAGGTCTCGC
CGGTGTTGATATCTGAGGCAAATAGTGCAAATAAAACCAAACCAGAGATT
CAGGAAGAAGGGATTAAGGCCACTGGTGGTAGCATGGAGACTGGTCGTGG
GGGAAAGGTAAGAGGGGCATTGAATACCCTTCGTATTCGTGCCCCAGTAA
CCCAGGACCTGCTGAAACAAGTGGTGGGTGTTGCGCAGGCTGCTGCTGCT
GTGGAGGGTGGGGCTGGGGTATTGACTGGGGCTAGAGATAGGGTCAAGGA
TGACAGTCCCTTGGCTGGCTCCGGAGCTGATCCTCTGGGGGAAATAAGTT
TTGGAAGGGCTGTGCGTGACATGTCTGAAGGGGACTGGTTGTTGACCTAC
CATCCACCAGAGGGGGCCAGGGGGGCAGTCAACTCAGCTGGTGGGACCGG
AAGAGGTTCGCTGTCTGTGCCAATGATTACGCGGCGACAACAGCAGACTA
GGGGGGGGGATGGGGGGGGTGGTGAAGAGCGTGATCTGTTTGACCAGCTG
GAGAGGAGTGCTGCTGCAAGGGACAAGGCTACTCAACGATGCCGTGTTAT
ATTGTCCAGCACTGGTGTTGTGTCTGCCCAGGAGGATGGTCTGGTTGGTA
CGGGAACTGGTACTGTGGCCGGAAGTGTCCAGGGATTGGACTGGAACCCT
CAATTTGCCCCCCGCCTTCAGGAGGCTGAGAGTGCCTTGGTGGATTGGCT
GACGCAGCTGACATGGGTGCTGCACACACTTACCCTCCCTTGCACACTAG
CCTTCCTCACAGACACAAGGGAAACAGGTGAGGGTGATGCTAAGGGTAGT
GACTTCCGTCGTAGTGATGGTGGTCGGCAAGAGGGCCGGGGTGGGGAGCG
GCAGGGGGGTGAAGACGAGAAAGGTGGGAGGAGAGAAGGTGGGGAGGATG
CATTGCTGTCGGAGTCGTCGTCCCCCCCTTCCCCTGTGATGCTTTTGAAC
AATGACCTGTCGCAAATGTGTGAGCTGGTGGAAGAATTGTGGACAGCGTA
TGAGGAGACGGTTGCACGCTTGCTGGAGCTGACATTGGAGGCACGCAGAG
AGCACCTGAAGGAGCAGCCACAGCCCATGACCATTGCTCTCTGCTTTGCA
GCACACAACCGTGCCAGTGCTGCTGCGCTTCTGGACAGGAAACGCTTGGA
GTTGAGTACCCTGCATGATCTGGTGGCCCGGTCGCTGCTCTCTGCGGAGA
AGAGGTCGCTTCTACAGCGGGCAGAAGAGGCGAGGAGAAGGTGGGGAGGT
GCTTTGGTGGCAGAGGGGTTCCGGGCCTTGGATGAGCTGGCAGAGCGAGT
GTTAAAGACTCGACTTCAGGTGACTATTACTGGTGGTTGA
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Coding sequence (CDS) from alignment at C-tenellus_contig11043:670..2709-

>mRNA_C-tenellus_contig11043.1.1 ID=mRNA_C-tenellus_contig11043.1.1|Name=mRNA_C-tenellus_contig11043.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=1542bp|location=Sequence derived from alignment at C-tenellus_contig11043:670..2709- (Choristocarpus tenellus KU2346)
GGTGGAGATTCTCGCCGAGGATGCGATTCGGGATCCTCCGAGGTGGATCG
TCAGATACCGGTGTCGGGGGATAGAGATAGAGAGAGGGATAGGGACAAGA
CTGCTACCGACGAGTGCCACAACGGCCAGTGGCTTGGGGGCAGCCTTGGC
ATTCGTCAGGCAGCGGAGAGGAGGTGGATGTGGCAGGGATTTACGGCGAA
ACAGTTCAAGGCATTCGCACAGGAATTCCCCCCATCACTGGAAATTAGTC
TTGATGAGATTCATGCGCGGGTGGAGGATATCAAGTGCCGGAGTTGTCGG
GATCGCCTACTTAAAGCCCTGGACAAGGGCATGACCAGAGGAGGTTTTTC
TCTGAACAAGGTGGTGAAGCTCACAGCCTGCAGCTCGTCCAGCAGGACCG
TTGGTAGTGAGGGGGGGGAGGATTCACAGGTCTCGCCGGTGTTGATATCT
GAGGCAAATAGTGCAAATAAAACCAAACCAGAGATTCAGGAAGAAGGGAT
TAAGGCCACTGGTGGTAGCATGGAGACTGGTCGTGGGGGAAAGGTAAGAG
GGGCATTGAATACCCTTCGTATTCGTGCCCCAGTAACCCAGGACCTGCTG
AAACAAGTGGTGGGTGTTGCGCAGGCTGCTGCTGCTGTGGAGGCTGATCC
TCTGGGGGAAATAAGTTTTGGAAGGGCTGTGCGTGACATGTCTGAAGGGG
ACTGGTTGTTGACCTACCATCCACCAGAGGGGGCCAGGGGGGCAGTCAAC
TCAGCTGGTGGGACCGGAAGAGGTTCGCTGTCTGTGCCAATGATTACGCG
GCGACAACAGCAGACTAGGGGGGGGGATGGGGGGGGTGGTGAAGAGCGTG
ATCTGTTTGACCAGCTGGAGAGGAGTGCTGCTGCAAGGGACAAGGCTACT
CAACGATGCCGTGTTATATTGTCCAGCACTGGTGTTGTGTCTGCCCAGGA
GGATGGTCTGGTTGGTACGGGAACTGGTACTGTGGCCGGAAGTGTCCAGG
GATTGGACTGGAACCCTCAATTTGCCCCCCGCCTTCAGGAGGCTGAGAGT
GCCTTGGTGGATTGGCTGACGCAGCTGACATGGGTGCTGCACACACTTAC
CCTCCCTTGCACACTAGCCTTCCTCACAGACACAAGGGAAACAGGTGAGG
GTGATGCTAAGGGTAGTGACTTCCGTCGTAGTGATGAATTGTGGACAGCG
TATGAGGAGACGGTTGCACGCTTGCTGGAGCTGACATTGGAGGCACGCAG
AGAGCACCTGAAGGAGCAGCCACAGCCCATGACCATTGCTCTCTGCTTTG
CAGCACACAACCGTGCCAGTGCTGCTGCGCTTCTGGACAGGAAACGCTTG
GAGTTGAGTACCCTGCATGATCTGGTGGCCCGGTCGCTGCTCTCTGCGGA
GAAGAGGTCGCTTCTACAGCGGGCAGAAGAGGCGAGGAGAAGGTGGGGAG
GTGCTTTGGTGGCAGAGGGGTTCCGGGCCTTGGATGAGCTGGCAGAGCGA
GTGTTAAAGACTCGACTTCAGGTGACTATTACTGGTGGTTGA
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