mRNA_C-tenellus_contig11025.2.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig11025.2.1
Unique NamemRNA_C-tenellus_contig11025.2.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig11025.2.1 vs. uniprot
Match: D8LB37_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LB37_ECTSI)

HSP 1 Score: 58.9 bits (141), Expect = 1.410e-7
Identity = 26/45 (57.78%), Postives = 32/45 (71.11%), Query Frame = 3 
Query:   51 SSVLLGHPVQEGTRYAEGLLFGTVNRRLGTETGDTHEERSVAHRE 185
            +S   G   ++GTRY +GLLFG+VNRR GTET D HE R+  HRE
Sbjct:   22 ASPYAGSEPRKGTRYTDGLLFGSVNRRQGTETEDDHERRATTHRE 66
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig11025.2.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB37_ECTSI1.410e-757.78Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig11025contigC-tenellus_contig11025:1375..2250 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size427
Hectar predicted targeting categoryother localisation
Exons2
Cds size186
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.6586845-UTR-C-tenellus_contig11025:1374..15951680789159.6586845-UTR-C-tenellus_contig11025:1374..1595Choristocarpus tenellus KU2346UTRC-tenellus_contig11025 1375..1595 -
1680789159.6957252-UTR-C-tenellus_contig11025:2230..22501680789159.6957252-UTR-C-tenellus_contig11025:2230..2250Choristocarpus tenellus KU2346UTRC-tenellus_contig11025 2231..2250 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789159.6746755-CDS-C-tenellus_contig11025:1595..17181680789159.6746755-CDS-C-tenellus_contig11025:1595..1718Choristocarpus tenellus KU2346CDSC-tenellus_contig11025 1596..1718 -
1680789159.6857414-CDS-C-tenellus_contig11025:2167..22301680789159.6857414-CDS-C-tenellus_contig11025:2167..2230Choristocarpus tenellus KU2346CDSC-tenellus_contig11025 2168..2230 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig11025.2.1prot_C-tenellus_contig11025.2.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig11025 1596..2230 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig11025.2.1

>prot_C-tenellus_contig11025.2.1 ID=prot_C-tenellus_contig11025.2.1|Name=mRNA_C-tenellus_contig11025.2.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=62bp
MSSFKGVCSFSSVLLGHPVQEGTRYAEGLLFGTVNRRLGTETGDTHEERS
VAHREIGDKNS*
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mRNA from alignment at C-tenellus_contig11025:1375..2250-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig11025.2.1 ID=mRNA_C-tenellus_contig11025.2.1|Name=mRNA_C-tenellus_contig11025.2.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=876bp|location=Sequence derived from alignment at C-tenellus_contig11025:1375..2250- (Choristocarpus tenellus KU2346)
ATCTACTCGTTTGTTCAGCGATGAGTTCCTTCAAAGGTGTGTGCTCCTTC
TCAAGTGTGCTTCTTGGCCATCCAGTCCAAGAGGTGTGAGGTATACACAA
AATCAGGATATTGCATAGTGATATGAATGGACGGACGGGCGGATGATGAC
TGCTTCATGGAAACACACTACACTCCAACTCTACGATTTACAAACTCAAC
AACATAGTCAAGCGAGGTCAAAACTTTGTGGTGTATTATGAAAGAGATTT
ACGATGCGGATGGCGTGTCATTATCCGGCTCACTCCTATCATCTCTTCTG
CATGAGGCCGCATCGCCCTATGGCGCTTCCAGCAATGGGAAGGTGCAACT
TCGAGGACTATTACAGTATCAAGTATTTCAAGTCCCAACAACCTGTTGAA
GAGCAGGTTCTACCGTTGCTGACTTACAGGGAGCCAACCTCACCGTCCTA
TCAAAAGATAACGAGTAAACCACAATCCCCCCCTTTTTGCCTTCCTTGAT
TTCTTGTTCATCAAACATCCCATATTGAACAGGGAACTCGATACGCGGAA
GGACTCCTTTTTGGTACCGTGAACCGTCGACTGGGGACTGAGACAGGCGA
CACCCACGAGGAACGATCGGTCGCTCACCGCGAAATAGGTGATAAAAATT
CCTAGAGTTGTGGATACACGGACATAATCAATGTTGGGAGTAAACACTTG
GACTCTTCCCTTGGCTGCTTCACAACCTGAAATATTGTAGTTAAAGTTAT
ATCTTGCGCTTGTCCTCCCCGTCCTTGTATCATTTCACCTCTTACACCCC
CACGCTGTATTGCTAGGATATGTAGTATTATCCAGAGTATCGCTGCAGAT
CGATATGAATAGCTCTAACGTCGACC
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Coding sequence (CDS) from alignment at C-tenellus_contig11025:1375..2250-

>mRNA_C-tenellus_contig11025.2.1 ID=mRNA_C-tenellus_contig11025.2.1|Name=mRNA_C-tenellus_contig11025.2.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=186bp|location=Sequence derived from alignment at C-tenellus_contig11025:1375..2250- (Choristocarpus tenellus KU2346)
ATGAGTTCCTTCAAAGGTGTGTGCTCCTTCTCAAGTGTGCTTCTTGGCCA
TCCAGTCCAAGAGGGAACTCGATACGCGGAAGGACTCCTTTTTGGTACCG
TGAACCGTCGACTGGGGACTGAGACAGGCGACACCCACGAGGAACGATCG
GTCGCTCACCGCGAAATAGGTGATAAAAATTCCTAG
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