mRNA_C-tenellus_contig10890.1.2 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10890.1.2
Unique NamemRNA_C-tenellus_contig10890.1.2
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5L5Y7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5Y7_9PHAE)

HSP 1 Score: 82.8 bits (203), Expect = 1.770e-13
Identity = 64/191 (33.51%), Postives = 90/191 (47.12%), Query Frame = 3 
Query:  453 SGSWPRSHHT*RGSLWSSLVMM-----------GRNHTVVITVEH---LQPKCLKDQVPCIADGALSVIVDGDKA--GLGKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTEDWIMNETKQTLLNGILGETVHPTVNEMGEFIMTGPGAIRGEEEDYVVAGPLAMGFILH 977
            S + PRS  + R   +SS V+            G +H++VI V     L   C     PC+ADGAL V++DGD+A    G VSLG GV ++AVNLPG CR F FE+YW E  KL    G    R+L +     +WI+ +   T ++  +         E G F      A + E   + +  P A   + H
Sbjct:   49 SSTCPRSPTSQRLGAYSSAVLERRLSVLTTDADGSDHSIVIEVAEPHSLDSSCPAGVSPCLADGALRVLLDGDEALFAHGTVSLGLGVEISAVNLPGACRSFGFEKYW-EHKKLEYATG---GRQLRTQPSMGEWILGDPTATNMDECVEYVARAEAEEGGMF------AHQSEHASFQIVTPAATVRLSH 229
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5L2W0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2W0_9PHAE)

HSP 1 Score: 75.5 bits (184), Expect = 2.030e-11
Identity = 52/131 (39.69%), Postives = 68/131 (51.91%), Query Frame = 3 
Query:  519 GRNHTVVITV---EHLQPKCLKDQVPCIADGALSVIVDGDKAGL--GKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTE---DWIMNETKQTLLNGILGETVHPTVNEMG 887
            G +HT+VITV     L   C     PC+ADGAL+V +DG  A L  G+V  G  V ++AVNLPG CR F FE+YW  K +   + G    RRL S    +   DWI+ +   T +       V  T N +G
Sbjct:   59 GLDHTIVITVTDPHSLDSACPVGVSPCLADGALTVQLDGKHALLAPGEVLFGPQVAISAVNLPGACRSFGFEEYWERKKQEYARGG----RRLPSSTQMQAMSDWILGDPTATNMAECTEYVVEATRNGLG 185
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5K7V7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7V7_9PHAE)

HSP 1 Score: 75.9 bits (185), Expect = 7.320e-11
Identity = 52/127 (40.94%), Postives = 72/127 (56.69%), Query Frame = 3 
Query:  519 GRNHTVVITV---EHLQPKCLKDQVPCIADGALSVIVDGDKAGL--GKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTE---DWIMNETKQTLL----NGILGETV 863
            G +H++VITV     L   C      C+ADGAL+V +DGD A L  G+  LG GV ++AVNLPG CR F FE+YW  + K +E +     RRL +D+  +   DWI+ +   T +      +LG TV
Sbjct:  201 GLDHSLVITVTDPHSLDSACPVQGSTCLADGALTVELDGDVALLSPGEAELGPGVAISAVNLPGACRSFGFEKYW--ERKKAEYVA--SGRRLNNDLQMQEMSDWILGDPTATNMAECTEYVLGATV 323
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5KRS2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRS2_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.890e-10
Identity = 47/111 (42.34%), Postives = 61/111 (54.95%), Query Frame = 3 
Query:  519 GRNHTVVITVEH---LQPKCLKDQVPCIADGALSVIVDGDKA--GLGKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVS-DVPTEDWIMNETKQT 833
            G +H+VVITV+    L+  C     PC+A+GALSV +DG +A    G V +   + V+ VNLPG CR F FE+YW  K     Q G    RRL S D    DWI+ +   T
Sbjct:  118 GLDHSVVITVKDPHSLESSCPAGVTPCLANGALSVSLDGKEALSAPGVVEMAPNMKVSVVNLPGACRSFGFEKYWERKKLEYAQAG---GRRLSSKDQDMGDWILGDPTAT 225
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 4.500e-9
Identity = 42/110 (38.18%), Postives = 60/110 (54.55%), Query Frame = 3 
Query:  519 GRNHTVVITVEH---LQPKCLKDQVPCIADGALSVIVDGDKAGL--GKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTEDWIMNETKQT 833
            G+ H+++I+V+    L   C     PC+ADG+L V++DG++  L  G V L   V V+AVN+PG CR F FE+YW  K     Q G    RRL       +WI+ +   T
Sbjct:  842 GQEHSIIISVKDPYSLDSDCSPGVSPCLADGSLIVVLDGNETLLAPGAVELASDVMVSAVNIPGACRSFGFEKYWERKKLEYAQAG---GRRLSVQQSMGEWILGDPTAT 948
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BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Match: A0A6H5JRC1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRC1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 7.230e-9
Identity = 40/110 (36.36%), Postives = 62/110 (56.36%), Query Frame = 3 
Query:  519 GRNHTVVITVE---HLQPKCLKDQVPCIADGALSVIVDGDKA--GLGKVSLGGGVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTEDWIMNETKQT 833
            G+ H+++I+V+   +L   C     PC+ADG+L V++DG++     G V L   V V+AVN+PG CR F FE+YW  K     Q G    R L+++    +WI+ +   T
Sbjct:  660 GQEHSIIISVKDPHNLDSDCPPGVSPCLADGSLIVVLDGNETLFAPGAVELAPDVKVSAVNIPGACRSFGFEKYWERKKLEYAQAG---GRGLLTEQSMGEWILGDPTAT 766
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10890.1.2 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5L5Y7_9PHAE1.770e-1333.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L2W0_9PHAE2.030e-1139.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K7V7_9PHAE7.320e-1140.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KRS2_9PHAE9.890e-1042.34Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JF50_9PHAE4.500e-938.18LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
A0A6H5JRC1_9PHAE7.230e-936.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10890contigC-tenellus_contig10890:2..3105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1911
Hectar predicted targeting categoryother localisation
Exons4
Cds size471
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10890.1.2prot_C-tenellus_contig10890.1.2Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10890 770..2177 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.384344-UTR-C-tenellus_contig10890:1..981680789153.384344-UTR-C-tenellus_contig10890:1..98Choristocarpus tenellus KU2346UTRC-tenellus_contig10890 2..98 +
1680789153.3975894-UTR-C-tenellus_contig10890:354..7691680789153.3975894-UTR-C-tenellus_contig10890:354..769Choristocarpus tenellus KU2346UTRC-tenellus_contig10890 355..769 +
1680789153.45153-UTR-C-tenellus_contig10890:2177..31051680789153.45153-UTR-C-tenellus_contig10890:2177..3105Choristocarpus tenellus KU2346UTRC-tenellus_contig10890 2178..3105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789153.4053645-CDS-C-tenellus_contig10890:769..9041680789153.4053645-CDS-C-tenellus_contig10890:769..904Choristocarpus tenellus KU2346CDSC-tenellus_contig10890 770..904 +
1680789153.426249-CDS-C-tenellus_contig10890:1222..14171680789153.426249-CDS-C-tenellus_contig10890:1222..1417Choristocarpus tenellus KU2346CDSC-tenellus_contig10890 1223..1417 +
1680789153.4392292-CDS-C-tenellus_contig10890:2036..21771680789153.4392292-CDS-C-tenellus_contig10890:2036..2177Choristocarpus tenellus KU2346CDSC-tenellus_contig10890 2037..2177 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10890.1.2

>prot_C-tenellus_contig10890.1.2 ID=prot_C-tenellus_contig10890.1.2|Name=mRNA_C-tenellus_contig10890.1.2|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=157bp
MMGRNHTVVITVEHLQPKCLKDQVPCIADGALSVIVDGDKAGLGKVSLGG
GVGVTAVNLPGECRPFWFEQYWLEKTKLSEQIGVDQSRRLVSDVPTEDWI
MNETKQTLLNGILGETVHPTVNEMGEFIMTGPGAIRGEEEDYVVAGPLAM
GFILHL*
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mRNA from alignment at C-tenellus_contig10890:2..3105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10890.1.2 ID=mRNA_C-tenellus_contig10890.1.2|Name=mRNA_C-tenellus_contig10890.1.2|organism=Choristocarpus tenellus KU2346|type=mRNA|length=3104bp|location=Sequence derived from alignment at C-tenellus_contig10890:2..3105+ (Choristocarpus tenellus KU2346)
ATTGACCCCAAATGGACAGCCGCCACCCCCTCCCAGATACTTCGAGCCAC
CACACTCCACATGTATTTTTGAGGGGAGCGAGCAAAACGAGTGAGAGGTC
AACCTTTTAAATTGGGTATTCATTTTTCCTTTTGGGGGGGGGTAGGGTAC
CTAAAAAAAATTGTAGGTTGAAGATCAAAACAGCCTTCACTGCCCTGCAT
GTAGTGAGCAAGTAGGGCATATCGGAGACATTACTTGTAGCTCTTCTAGA
GCATTTTAATATCATGAGTCTCAAGAACCTGAGCTTTCCCTACGAGTACT
TCCATTGATCGTCCATTCGTTTCCTCTGTATCTATTTCAAACTGTCTGTA
CAGCCTGGGAATAAAATATCGAGCGATCAAACTACCAGAGGGGTTTTGCC
ACAAATCTATCATATGCTCTGCTCCCTCTTCTCGCTTTTACAACAAATGA
ATACTGCGAGGGTCAAGGGATTTATGATGGTTTCTTCCAGATGTTTGTGG
TTTGTCGCTACAGCCCACAGGGTAACATTGATGGGCAGTTCAACGACCAA
GTTCTTGCCGATCCACTAGCCACTTGTAATGGTGGAGGAACTGGTGACCC
TCACATATCCGGGTTGAAAGGACAAAAGTTTGACTTCTCTGGAGTGACCA
ACTCTTGGTATGCACTGCTCCATGAGAAAAAGGTTAGCCTCAACATGCGC
GTTACAGCTCCGGTTCCTGGCCTCGATCTCATCATACATAACGGGGATCG
TTATGGTCCTCACTGGTTATGATGGGGAGAAATCACACCGTGGTCATTAC
CGTTGAGCATCTTCAACCCAAGTGCCTGAAGGACCAGGTTCCATGCATTG
CGGACGGGGCTCTATCTGTGATCGTTGATGGCGACAAGGCTGGACTTGGG
AAGGTGCGTTTCTTAACTTCTGTCTTCATTGGATTTGTAGTTGTGTTTGA
GGTGTCGACTTCAAATCATTTTAAGATACTCCTCAAGTTCTGTTCATTCA
TGACAAAGGAATCAATCTAGGTGTAGTTGAAAAAGTATTGAGAGGCAGTA
CTTGAGGCGGGATACATTCATTGGGCTGGTGACCAAGTGAATATACTAAG
TATCCAAAGGCAGAGGTGTGCATTCCTCTTGCTTTGATGTCCCACCATGA
CATTTTATTAGCTCTAATGAACATCTACTGAGTTTCACCGTTGCTATACT
TTTTGTGCTGCCTCACCATAGGTATCTCTTGGTGGTGGTGTTGGCGTCAC
AGCTGTCAACCTTCCTGGAGAGTGCCGGCCCTTTTGGTTTGAACAGTACT
GGCTGGAGAAAACGAAACTGTCTGAACAAATTGGTGTAGACCAATCTCGA
CGCCTTGTCTCTGATGTGCCGACGGAGGATTGGATCATGAACGAAACCAA
ACAAACCCTGTTGAATGTGAGGAATACGTTCTCAGAGCAGCAGCAGACGG
CACCCTATTTGACTTGCAATCTGAGCACACATCATTCCAGATAACATCAC
CTGAGTTGTCCCTACGTATCAACCATGGGAAGATCCACCAAGTGGCATAG
ACCCAACTGACAAGTTCGATCTTCCTGATCACATAGCTTATCAGATGAAG
ATCATTGTTGAGGAGATCAGCCTAGATGATGATCCTCAGGTATGCACTCT
GGGGAAGAGAGTTGTTTGATTTAGTAAGGAAGGACTTTCTTAAATGTTTG
GTCCCAATAGAAAATGTATTGTAGGGATGAGTTGAAAACAATTTGATTCG
CATTTCTCGCATATGCAGTATTAATGTTGGTTAGTACATGCAGCAAATTT
AACGTGTGATTTCATTGCAATGTACCTCTTTACCACTAGACTTCAATGTC
TCGAAATAGTCGGCGTAGAGATCAGATGAAAGGGGGACATATTTTACATT
CTAACAAATTCTTTCACTTTAGGCATTTTTCAATAATAAAGGTTATTCTT
TGTTGCATATGAGCCGCATTGAAAGTATATACTTAATGGTACAATTGATC
ATTTGGTGCTGTCCTGCAAATGTTGAACTGTGCAGGGTATTTTGGGTGAA
ACTGTTCATCCAACTGTGAACGAGATGGGAGAGTTTATCATGACAGGACC
TGGCGCTATTCGTGGGGAGGAAGAAGACTATGTAGTGGCAGGCCCTCTTG
CAATGGGCTTTATCCTTCACCTGTGAATGATATAATCACCAGCAATTGCT
TTGTGCAACTACATGCGTGGTGTGTAAGGTGTGAATTAAGTAGTGAAGAG
TTGAGCTCGTATTGATTCGAGTGAGTACTAATAAGTCGCATGCCCTAAAA
TTGTTTTCAGTTTTGGAGTTCGAAATAGTCAGAGTAAAGGTAATAATTGC
TTTTATTCTGGGTTTTATTCAGTGTCAATGTTTGCAGGAGGTATTTTTAT
CTTTGCATTAGAAATCAAGGAGGTAAGCTCCACTCCTCTATCATCCAACT
CAACTGTTAGCACCCAAGAAGGTGGGTAGATGGAAGAGATTACCTTGACC
CTGGCCTTCAAGAATATATGTTAACTTCGAAACTGACTTTGACATTTCCT
CTGGTGTGATACCCATATCCATCCACGAACATTGTTGGTAACTAAGTTCT
TCCCCATAATTTTGTCACTGATGTCGGTAGTTACTATTTGACGTATCTGG
AGTATTTCTTCATTCCTACCACTTTAAGAAATATTTTCCAAGTACCACTG
GAGCTCAAGTGTCCCAACCTCAAAAGAAGTACATGAGGTCAAAAGTGTGG
ACAGGACCCCTCACAATGAAGCGTCCCAGGAGCTGTACCGAAAGACTAGG
GTTGGTTGAGGCTTATGACTAGAAGGAGTTAGACAGGAAATGATTGATAT
ATATTGTTGCGCCCCTAATTGCGAATCTTGCTTTCATGCCACGTATTGGT
GACATCCTGTACAGATCATATGTGTATATATATATATGATATGTGAACCA
ACAGAAAGTGGTGTCGGATCCTTCAAACAGTCTTGTACCTGCCACATTGA
GTCAATCTGTAGATGTTGCTTCTCAAATTCTTGTTGGTATATCTTGTGTA
GATTCGACTGGTGAAAGAACAAGAAAATCCTTACATCGTTCCAATGACTT
GCTA
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Coding sequence (CDS) from alignment at C-tenellus_contig10890:2..3105+

>mRNA_C-tenellus_contig10890.1.2 ID=mRNA_C-tenellus_contig10890.1.2|Name=mRNA_C-tenellus_contig10890.1.2|organism=Choristocarpus tenellus KU2346|type=CDS|length=471bp|location=Sequence derived from alignment at C-tenellus_contig10890:2..3105+ (Choristocarpus tenellus KU2346)
ATGATGGGGAGAAATCACACCGTGGTCATTACCGTTGAGCATCTTCAACC
CAAGTGCCTGAAGGACCAGGTTCCATGCATTGCGGACGGGGCTCTATCTG
TGATCGTTGATGGCGACAAGGCTGGACTTGGGAAGGTATCTCTTGGTGGT
GGTGTTGGCGTCACAGCTGTCAACCTTCCTGGAGAGTGCCGGCCCTTTTG
GTTTGAACAGTACTGGCTGGAGAAAACGAAACTGTCTGAACAAATTGGTG
TAGACCAATCTCGACGCCTTGTCTCTGATGTGCCGACGGAGGATTGGATC
ATGAACGAAACCAAACAAACCCTGTTGAATGGTATTTTGGGTGAAACTGT
TCATCCAACTGTGAACGAGATGGGAGAGTTTATCATGACAGGACCTGGCG
CTATTCGTGGGGAGGAAGAAGACTATGTAGTGGCAGGCCCTCTTGCAATG
GGCTTTATCCTTCACCTGTGA
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