mRNA_C-tenellus_contig10804.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10804.1.1
Unique NamemRNA_C-tenellus_contig10804.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10804.1.1 vs. uniprot
Match: A0A835YW26_9STRA (WW domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW26_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.820e-10
Identity = 26/44 (59.09%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:   16 LTPEDYILPEGWIVAFSKKEKRSYFFNTTTGVSVWTAPSGSKPK 147
            L P D++LP GW V  S K++R YFFN+TTG S+WT P GS PK
Sbjct: 1267 LQPHDFVLPPGWTVQRSSKQQREYFFNSTTGKSLWTPPPGSVPK 1310
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BLAST of mRNA_C-tenellus_contig10804.1.1 vs. uniprot
Match: A0A6H5K9W2_9PHAE (WW domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9W2_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.660e-9
Identity = 25/51 (49.02%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 KEVKKLTPEDYILPEGWIVAFSKKEKRSYFFNTTTGVSVWTAPSGSKPKHA 153
            +E K L+P DY+LP+GW+VA SK+E R YFFN     + W  P GS+ ++A
Sbjct:  859 QEQKTLSPHDYVLPDGWMVARSKRENRDYFFNRRNNSTQWHPPEGSRRRNA 909
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BLAST of mRNA_C-tenellus_contig10804.1.1 vs. uniprot
Match: D7FSB5_ECTSI (Dice1/dead/H box polypeptide, putative n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSB5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.730e-7
Identity = 22/44 (50.00%), Postives = 30/44 (68.18%), Query Frame = 1 
Query:   19 TPEDYILPEGWIVAFSKKEKRSYFFNTTTGVSVWTAPSGSKPKH 150
            +P DYILP+GW+VA SK+E R YFFN     + W  P GS+ ++
Sbjct: 1226 SPHDYILPDGWMVARSKRENRDYFFNKRNNSTQWHPPEGSRRRN 1269
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BLAST of mRNA_C-tenellus_contig10804.1.1 vs. uniprot
Match: A0A4D9CVW8_9STRA (WW domain-containing protein n=4 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9CVW8_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 6.270e-6
Identity = 20/31 (64.52%), Postives = 26/31 (83.87%), Query Frame = 1 
Query:   43 EGWIVAFSKKEKRSYFFNTTTGVSVWTAPSG 135
            EGW++A+SK+EKR Y+FN  T V+VWTAP G
Sbjct: 1033 EGWMLAWSKREKRLYYFNIKTNVAVWTAPPG 1063
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10804.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A835YW26_9STRA3.820e-1059.09WW domain-containing protein n=1 Tax=Tribonema min... [more]
A0A6H5K9W2_9PHAE4.660e-949.02WW domain-containing protein n=1 Tax=Ectocarpus sp... [more]
D7FSB5_ECTSI2.730e-750.00Dice1/dead/H box polypeptide, putative n=1 Tax=Ect... [more]
A0A4D9CVW8_9STRA6.270e-664.52WW domain-containing protein n=4 Tax=Monodopsidace... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10804contigC-tenellus_contig10804:939..1097 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Seed ortholog2880.D7FSB5
Preferred nameINTS6
PFAMsINT_SG_DDX_CT_C,VWA_2
Model size159
Max annot lvl2759|Eukaryota
KEGG koko:K13143,ko:K13180
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000428,GO:0003674,GO:0004888,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005856,GO:0006139,GO:0006351,GO:0006366,GO:0006396,GO:0006725,GO:0006807,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009301,GO:0009987,GO:0010467,GO:0015629,GO:0016070,GO:0016073,GO:0016180,GO:0016591,GO:0018130,GO:0019438,GO:0023052,GO:0030880,GO:0031123,GO:0031974,GO:0031981,GO:0032039,GO:0032774,GO:0032991,GO:0034470,GO:0034472,GO:0034641,GO:0034645,GO:0034654,GO:0034660,GO:0038023,GO:0042795,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043628,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0055029,GO:0060089,GO:0061695,GO:0065007,GO:0070013,GO:0071704,GO:0090304,GO:0097659,GO:0098781,GO:1901360,GO:1901362,GO:1901576,GO:1902494,GO:1990234
Exons1
Evalue4.48e-08
EggNOG OGsKOG3768@1|root,KOG3768@2759|Eukaryota
DescriptionsnRNA processing
Cds size159
COG categoryS
BRITEko00000,ko01000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789150.0980833-CDS-C-tenellus_contig10804:938..10971680789150.0980833-CDS-C-tenellus_contig10804:938..1097Choristocarpus tenellus KU2346CDSC-tenellus_contig10804 939..1097 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10804.1.1prot_C-tenellus_contig10804.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10804 939..1097 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10804.1.1

>prot_C-tenellus_contig10804.1.1 ID=prot_C-tenellus_contig10804.1.1|Name=mRNA_C-tenellus_contig10804.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=53bp
KEVKKLTPEDYILPEGWIVAFSKKEKRSYFFNTTTGVSVWTAPSGSKPKH
AT*
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mRNA from alignment at C-tenellus_contig10804:939..1097+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10804.1.1 ID=mRNA_C-tenellus_contig10804.1.1|Name=mRNA_C-tenellus_contig10804.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=159bp|location=Sequence derived from alignment at C-tenellus_contig10804:939..1097+ (Choristocarpus tenellus KU2346)
AAGGAGGTCAAGAAACTTACGCCAGAGGACTACATTCTTCCAGAGGGATG
GATTGTGGCCTTTTCCAAGAAAGAGAAACGCTCATACTTCTTCAACACTA
CCACTGGGGTCTCTGTGTGGACAGCCCCTTCAGGCAGCAAGCCCAAGCAC
GCCACATGA
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Coding sequence (CDS) from alignment at C-tenellus_contig10804:939..1097+

>mRNA_C-tenellus_contig10804.1.1 ID=mRNA_C-tenellus_contig10804.1.1|Name=mRNA_C-tenellus_contig10804.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=159bp|location=Sequence derived from alignment at C-tenellus_contig10804:939..1097+ (Choristocarpus tenellus KU2346)
AAGGAGGTCAAGAAACTTACGCCAGAGGACTACATTCTTCCAGAGGGATG
GATTGTGGCCTTTTCCAAGAAAGAGAAACGCTCATACTTCTTCAACACTA
CCACTGGGGTCTCTGTGTGGACAGCCCCTTCAGGCAGCAAGCCCAAGCAC
GCCACATGA
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