mRNA_C-tenellus_contig10796.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10796.1.1
Unique NamemRNA_C-tenellus_contig10796.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10796.1.1 vs. uniprot
Match: A0A836CEK3_9STRA (P-loop containing nucleoside triphosphate hydrolase protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CEK3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 6.240e-5
Identity = 26/57 (45.61%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:    1 QIVLTKADLLNPEDLSSCVRLLREDLQSFPG-LVETVPV--VCGTAGAGVTALWQEL 162
            Q+VLTK DLL PE L+  +  + +DL      L+   P+  VCG  GAGVTALW+ +
Sbjct:  234 QLVLTKGDLLLPEQLAQSMAAVTQDLMDIGAKLLAKPPILPVCGHTGAGVTALWENM 290
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10796.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A836CEK3_9STRA6.240e-545.61P-loop containing nucleoside triphosphate hydrolas... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10796contigC-tenellus_contig10796:2760..2927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D7FIT5
PFAMsMMR_HSR1
Model size168
Max annot lvl2759|Eukaryota
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Evalue5.7e-12
EggNOG OGsCOG0218@1|root,KOG2486@2759|Eukaryota
DescriptionGTP binding
Cds size168
COG categoryV
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789149.3296466-CDS-C-tenellus_contig10796:2759..29271680789149.3296466-CDS-C-tenellus_contig10796:2759..2927Choristocarpus tenellus KU2346CDSC-tenellus_contig10796 2760..2927 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10796.1.1prot_C-tenellus_contig10796.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10796 2760..2927 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10796.1.1

>prot_C-tenellus_contig10796.1.1 ID=prot_C-tenellus_contig10796.1.1|Name=mRNA_C-tenellus_contig10796.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=56bp
QIVLTKADLLNPEDLSSCVRLLREDLQSFPGLVETVPVVCGTAGAGVTAL
WQELEK
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mRNA from alignment at C-tenellus_contig10796:2760..2927+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10796.1.1 ID=mRNA_C-tenellus_contig10796.1.1|Name=mRNA_C-tenellus_contig10796.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10796:2760..2927+ (Choristocarpus tenellus KU2346)
CAGATAGTACTAACCAAGGCGGATCTCCTCAACCCTGAAGACCTATCCTC
CTGTGTCCGCCTTTTGAGGGAGGACCTGCAAAGTTTCCCTGGACTTGTTG
AGACCGTACCTGTTGTGTGTGGCACTGCTGGTGCCGGTGTGACTGCACTA
TGGCAAGAGTTGGAGAAG
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Coding sequence (CDS) from alignment at C-tenellus_contig10796:2760..2927+

>mRNA_C-tenellus_contig10796.1.1 ID=mRNA_C-tenellus_contig10796.1.1|Name=mRNA_C-tenellus_contig10796.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=168bp|location=Sequence derived from alignment at C-tenellus_contig10796:2760..2927+ (Choristocarpus tenellus KU2346)
CAGATAGTACTAACCAAGGCGGATCTCCTCAACCCTGAAGACCTATCCTC
CTGTGTCCGCCTTTTGAGGGAGGACCTGCAAAGTTTCCCTGGACTTGTTG
AGACCGTACCTGTTGTGTGTGGCACTGCTGGTGCCGGTGTGACTGCACTA
TGGCAAGAGTTGGAGAAG
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