mRNA_C-tenellus_contig1072.12.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig1072.12.1
Unique NamemRNA_C-tenellus_contig1072.12.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: D8LF65_ECTSI (Hypothetical leucine-rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF65_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 6.300e-11
Identity = 28/43 (65.12%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHL 129
            +L TW GVEV+DEG VV++ LP NNL GPIPE+LG L++L HL
Sbjct:   32 ELATWAGVEVNDEGRVVQLILPDNNLHGPIPEALGTLNELTHL 74
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: A0A1S1Z108_9BACT (Uncharacterized protein n=2 Tax=Flammeovirga pacifica TaxID=915059 RepID=A0A1S1Z108_9BACT)

HSP 1 Score: 58.5 bits (140), Expect = 1.090e-8
Identity = 25/51 (49.02%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNFKYNILS 153
            DL  W+G+  DD G V+ I L  NNL G IPE +G LS+L H+N   N L+
Sbjct:  602 DLDNWFGITTDDNGRVIAIELDNNNLSGTIPEEIGELSELRHINVMVNYLT 652
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: D8LBY3_ECTSI (Hypothetical leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBY3_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 2.790e-8
Identity = 27/51 (52.94%), Postives = 36/51 (70.59%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNFKYNILS 153
            DL TW+GV+V+D+G VVK+ L  NNL+G IP +LG L +L  L+   N LS
Sbjct:   32 DLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGKLGNLQQLHLSSNKLS 82
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: A0A7Y2ZMW8_9FLAO (Two component regulator three Y domain protein n=1 Tax=Flavobacteriaceae bacterium TaxID=1871037 RepID=A0A7Y2ZMW8_9FLAO)

HSP 1 Score: 56.2 bits (134), Expect = 6.380e-8
Identity = 23/45 (51.11%), Postives = 37/45 (82.22%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNF 135
            D+ TWYG+E+++ G+V+ I+L  NNL G +PES+G+L++L H+NF
Sbjct:   50 DVETWYGIEIEN-GHVISIDLSFNNLVGQLPESIGDLNELRHINF 93
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 7.150e-8
Identity = 26/43 (60.47%), Postives = 32/43 (74.42%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHL 129
            ++ TW GV+V+DEG VVK+ L  NNL+GPIP  LGNLS L  L
Sbjct:   32 EIATWSGVQVNDEGRVVKLRLKSNNLRGPIPPQLGNLSFLESL 74
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: D7FUH5_ECTSI (Leucine rich repeat protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUH5_ECTSI)

HSP 1 Score: 54.7 bits (130), Expect = 2.010e-7
Identity = 25/42 (59.52%), Postives = 31/42 (73.81%), Query Frame = 1 
Query:    4 LPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHL 129
            L TWYGV+V+ EG VVK++L  NNL+G +P  LGNL  L HL
Sbjct:   33 LGTWYGVDVNAEGRVVKLSLYNNNLQGSLPPQLGNLGALQHL 74
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: A0A6H5JFA4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFA4_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 3.390e-7
Identity = 25/39 (64.10%), Postives = 29/39 (74.36%), Query Frame = 1 
Query:    4 LPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDL 120
            L  WYGVE +D+G VVK+ L  NNL+GPIP  LGNLS L
Sbjct:   67 LSDWYGVEANDQGRVVKLYLSSNNLRGPIPLELGNLSAL 105
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BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: D7FH89_ECTSI (Putative Leucine Rich Repeat Protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FH89_ECTSI)

HSP 1 Score: 53.9 bits (128), Expect = 4.670e-7
Identity = 26/51 (50.98%), Postives = 35/51 (68.63%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNFKYNILS 153
            DL  W+GVEV+  G VV+++L  NNL+G IPE+L  L +LM LN   N L+
Sbjct:   65 DLSKWHGVEVNQHGRVVELDLNNNNLRGTIPETLRGLKELMVLNLSCNKLT 115
[Close]
BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: A0A6H5JK91_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK91_9PHAE)

HSP 1 Score: 52.8 bits (125), Expect = 4.750e-7
Identity = 23/40 (57.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDL 120
            DL TW+GV+V+D+G VVK+ L  NNL+G IP +LG L++L
Sbjct:   32 DLKTWHGVDVNDQGRVVKLKLRDNNLEGEIPATLGQLANL 71
[Close]
BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Match: A0A1V6J2P6_9BACT (Thiol-disulfide oxidoreductase ResA n=1 Tax=Bacteroidetes bacterium ADurb.Bin013 TaxID=1852797 RepID=A0A1V6J2P6_9BACT)

HSP 1 Score: 52.8 bits (125), Expect = 1.200e-6
Identity = 22/47 (46.81%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:    4 LPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNFKYN 144
            L  W+G+ VD+ G+V K+ LP+NNLKG +P  +G+L  L  L   YN
Sbjct:  422 LDQWFGLTVDEHGFVTKLELPENNLKGTLPAEIGDLVKLQSLYLGYN 468
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig1072.12.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LF65_ECTSI6.300e-1165.12Hypothetical leucine-rich repeat protein n=1 Tax=E... [more]
A0A1S1Z108_9BACT1.090e-849.02Uncharacterized protein n=2 Tax=Flammeovirga pacif... [more]
D8LBY3_ECTSI2.790e-852.94Hypothetical leucine rich repeat protein n=1 Tax=E... [more]
A0A7Y2ZMW8_9FLAO6.380e-851.11Two component regulator three Y domain protein n=1... [more]
D8LCS7_ECTSI7.150e-860.47LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D7FUH5_ECTSI2.010e-759.52Leucine rich repeat protein n=1 Tax=Ectocarpus sil... [more]
A0A6H5JFA4_9PHAE3.390e-764.10Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FH89_ECTSI4.670e-750.98Putative Leucine Rich Repeat Protein n=1 Tax=Ectoc... [more]
A0A6H5JK91_9PHAE4.750e-757.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A1V6J2P6_9BACT1.200e-646.81Thiol-disulfide oxidoreductase ResA n=1 Tax=Bacter... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig1072contigC-tenellus_contig1072:10045..12369 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog1501391.LG35_09195
PFAMsCBM_4_9,He_PIG,Ig_3,LRRNT_2,LRR_1,LRR_8,Peptidase_M64,VCBS
Model size156
Max annot lvl976|Bacteroidetes
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Evalue1.79e-09
EggNOG OGsCOG4886@1|root,COG4886@2|Bacteria,4NI2K@976|Bacteroidetes
DescriptionPFAM Leucine Rich Repeat
Cds size153
COG categoryG
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789145.9392946-CDS-C-tenellus_contig1072:10046..101171680789145.9392946-CDS-C-tenellus_contig1072:10046..10117Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 10047..10117 -
1680789145.9542365-CDS-C-tenellus_contig1072:12287..123691680789145.9542365-CDS-C-tenellus_contig1072:12287..12369Choristocarpus tenellus KU2346CDSC-tenellus_contig1072 12288..12369 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig1072.12.1prot_C-tenellus_contig1072.12.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig1072 10047..12369 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig1072.12.1

>prot_C-tenellus_contig1072.12.1 ID=prot_C-tenellus_contig1072.12.1|Name=mRNA_C-tenellus_contig1072.12.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=51bp
DLPTWYGVEVDDEGYVVKINLPKNNLKGPIPESLGNLSDLMHLNFKYNIL
S
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mRNA from alignment at C-tenellus_contig1072:10045..12369-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig1072.12.1 ID=mRNA_C-tenellus_contig1072.12.1|Name=mRNA_C-tenellus_contig1072.12.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2325bp|location=Sequence derived from alignment at C-tenellus_contig1072:10045..12369- (Choristocarpus tenellus KU2346)
GATCTGCCAACGTGGTACGGGGTTGAAGTCGATGATGAAGGGTACGTGGT
GAAGATCAACCTCCCCAAGAACAACCTCAAGGGTAAGATTTGACTGTGGT
GTTTTACATTCCAATTTTGTGTGGTGCACGTCCATTTCCTGGTGGCTTCT
TGTATGGTTGGCTTCAAATTTGTGATGTGTATATCGAAGGGCGCAATAGT
GTTGACTCGCTCATGGAGGTCTTTTACAGATGTGAATGATGAAGGAGTTT
ACACTGAGCATTCGTGCATGTGTGTTGACACATGGGACAGTGGCTGTGAG
GTTAAAATCAAATAGTATTGGTCGAGGTTTTGTCCGCATTAGTGGTCCTA
GGAAGGAATGTGGTATGTGTACATGAGGTCATATTTGACTTCTGCCGTTT
TAGAAGGTCAACGATGAGGCGTGCGTTAACATTTGTAGGGGAATATGACA
CCACGACTCCTTTTGGAAGGGACAAGAAATTGGTTTTTACAATGACGCAA
GGGCTCGTCTTCCAAGGTTTGATTTTGGAGATTCTCGTGAAGGGAGATGG
AACACAACCTATATCGAAAGGTCTTTTGAGGTGGGGTATACAAAACTGTA
CAAGAGTGAAGCTGTGCGAGAACTGGACCATTTTGTCTTTGTGATTGGTT
GGGTGTGTCTCAGCTTTGACATCTACCTCTGAACAGCGTCCGTCAGGCTT
TGGTTTATGCTTTAGATTACCCTATTATGAAGTGGTGATCGCAAGTAACC
TCTTGCACTAAAGTATTTGTGACCAGAATGATTCGGACAGAACATGCAGT
ACCGGTAGATTGGTGTTCCAATCTTAATCTTGTTTGTTTTTATGTGATGT
TTAGAAGAAAAATATGTTCGCACATGTATTCAAAATCCGATTAAACATAT
TTCTGTGTAAATTGTAAATTCCTGAGATAAATTCTGCTAATCTCCCGCAA
CACAACCTTTTCTACTTTAAAATGTTCTGTGTACATAATATATTGCTGAA
GGCAAAATATCAATTATTTTTTTGTTAAATCAGTCAATGAGCAAAAACAT
ACCATCATTTCCGGGGGATTGGTACTTAAGATTAAATCTTTTAGAGCACC
TGTTGGAAGGCATTGATTGTCAGTTATCAATGGCTTGTCGTTTTGATTTG
TCATATTTCAAGTTTCTTGAAATCTCTATGAATTGATTTGATTATTTTTT
CTTTATTATAAACCCTAATGTGATTGCAAACCGAATGTTTATGGCTGGCA
ATTGAGAATCAGACCAGCATTGGTACGTTTAAACCCCACACTGTAGTGCC
CAGTAGAAAAATATGATATTTTTCTGAACTTCTGTCTCCCAACATAAATT
GTTCTATAGTTTCTGTATTCTTTGTTAAGTCACTGACACCACATGCTGAG
AAATGGCATCATGGAGGGTGTTGCTAAATATAACAAGGCTGGTAGAGATT
GCAAAACCAATAGAGGAACAAGACAAGTGTGGTTGTGCTTCTGAAGTGGT
CGAGTTGTTGGTACATACAGATTTGCACTAATATCGATTGATACAGTTTA
GAAAAGTTAGGTTAAATAGTATCATTTTAGCTTTCTGTAGAGAGATTACT
AAATTTTCTAGTCAACATATTTTTGTAACATATGTGATCAAAGGTGCTCT
TGGTATGATTAACTGTTTTTTAGTGTGTAGTGAAAGCTAAACATTACAAC
AAATAGAACACCCATGAATTCTTGTTTGTGAATAATAAAATGCATATTGG
AGTCATTTTACGATTATTTTTTGTTATAATTTGTGTAAAAAACTTTTTAT
TTGAGGTAATACACTCCCGTTGTTGGTGTTTCTGGAATATATATTGTGAG
TAGTGTCACTTTTTCATATGTACTATGCGGTAAGTAAATCATGTCCCAGT
AACTAATTTTGTGATTTTTTTTAGTTTTCATTAATATTTTTTTGTTGCTA
ATGAATGTTCAGAAGTGTAGGCATATTAGTTGTGGTTGTATTAGTGAGGG
CAGGATAGTTAAGAAGGTATCATGTTTTGTGGTAGGTCTCTCCATTTGCT
CTCGTTTGTGTATAGCGTTGTTGTGGATAGGTTGGTTGAAGATGTTTGGT
TAATCTGAGGATAGAAGGTGATAGAGAATTTATGATTGTAAGAATAGATT
TGTTTTTCGTTTTGCATGCTTTGTCACCCCACTTTTGACTAATGGTTGTT
TGTGTATTATGAAACTTGAATAGCATTCGTAAATCAAATCCTTTCACCAC
AGGACCAATCCCGGAGTCACTGGGGAATCTCTCTGATCTCATGCACCTAA
ATTTTAAATACAATATTTTGAGTGG
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Coding sequence (CDS) from alignment at C-tenellus_contig1072:10045..12369-

>mRNA_C-tenellus_contig1072.12.1 ID=mRNA_C-tenellus_contig1072.12.1|Name=mRNA_C-tenellus_contig1072.12.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=153bp|location=Sequence derived from alignment at C-tenellus_contig1072:10045..12369- (Choristocarpus tenellus KU2346)
GATCTGCCAACGTGGTACGGGGTTGAAGTCGATGATGAAGGGTACGTGGT
GAAGATCAACCTCCCCAAGAACAACCTCAAGGGACCAATCCCGGAGTCAC
TGGGGAATCTCTCTGATCTCATGCACCTAAATTTTAAATACAATATTTTG
AGT
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