mRNA_C-tenellus_contig10560.1.1 (mRNA) Choristocarpus tenellus KU2346

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_C-tenellus_contig10560.1.1
Unique NamemRNA_C-tenellus_contig10560.1.1
TypemRNA
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Homology
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BLAST of mRNA_C-tenellus_contig10560.1.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.930e-74
Identity = 154/327 (47.09%), Postives = 196/327 (59.94%), Query Frame = 1 
Query:    1 STKQVVYTPDGTRLLSCGSDGLLCLYNVGRGYQPVRMLACDPPAPGSEMSLTVSPGSDRVAVLGPEPTCILLYDLASLVLRKRLGRPERRGPGEGSYGGGMGIGAGLDRVGSGGGWQPQVGAWEGQATAAWGGV-------GAFLHASFSGDGSDLMACTRSKLFRFPLRNSSRWGVGGTNDIQVWSALLPCKVEKVVSLL-PPQGPGLLLASPAXXXXXXXXXXXX-----------------GGRSLVGKAL------VSASELCLCQVHRDISSASVVLSMPQVFAAHSAPLSAAAFSRCGTHLVTCDASGVVLLWSNLASPDP 888
            + +QV +TPDGTRL+S G DGLLCLY+V +GY P R++ACD P PG  +SL+VSPGSDRVAV+G EP+CILLYDLA+L L+ RLG+P RRG G  +     G+G     +G    W  + G+ +   +             G FLHA+FSGDG+DL+ACT +KLFRFPL         G  D+  WSALLPCK    ++   P  GPGL+L SPA                             G R    +AL      ++ SEL L QVHRD  +ASVV+S PQ FAAH++P++ AAFS  G  L+TCD +GVVLLWSNLA+P P
Sbjct: 1121 AVQQVTFTPDGTRLISAGQDGLLCLYDVTQGYHPWRVMACDEPQPGRPISLSVSPGSDRVAVIGTEPSCILLYDLATLALKGRLGKPGRRGGGRFA----SGVGXXXXXLGMMQPWSHRPGSSDAAQSXXXXXXXXXXXXXGGFLHAAFSGDGADLLACTATKLFRFPL---------GGGDVHAWSALLPCKAGPAMAACNPATGPGLILVSPAEPAAGAGEPATTSTASAWGGEAGCWTGGGGKRGAAPRALGGGGSALAPSELFLSQVHRDARNASVVISAPQAFAAHASPVTVAAFSAGGDRLITCDGTGVVLLWSNLAAPAP 1434
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10560.1.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNU2_9PHAE5.930e-7447.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10560contigC-tenellus_contig10560:138..2799 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Seed ortholog2880.D8LMS4
Preferred nameWDR90
PFAMsBromodomain,DUF667,Nup160,WD40
Model size888
Max annot lvl2759|Eukaryota
KEGG koko:K11797,ko:K11798
Hectar predicted targeting categoryother localisation
GOsGO:0001932,GO:0001934,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005730,GO:0005737,GO:0005829,GO:0006325,GO:0006355,GO:0006357,GO:0006606,GO:0006810,GO:0006886,GO:0006913,GO:0006996,GO:0007010,GO:0007088,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007346,GO:0008104,GO:0008150,GO:0008284,GO:0008286,GO:0008360,GO:0009719,GO:0009725,GO:0009889,GO:0009891,GO:0009893,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010033,GO:0010243,GO:0010468,GO:0010556,GO:0010557,GO:0010562,GO:0010564,GO:0010604,GO:0010628,GO:0010638,GO:0010646,GO:0010647,GO:0010648,GO:0010799,GO:0010800,GO:0010941,GO:0015031,GO:0015833,GO:0016043,GO:0017038,GO:0019219,GO:0019220,GO:0019221,GO:0019222,GO:0022603,GO:0022604,GO:0023051,GO:0023052,GO:0023056,GO:0023057,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031399,GO:0031401,GO:0031974,GO:0031981,GO:0032268,GO:0032270,GO:0032868,GO:0032869,GO:0032870,GO:0033036,GO:0033043,GO:0033135,GO:0033138,GO:0033365,GO:0034097,GO:0034504,GO:0034613,GO:0038111,GO:0040008,GO:0042127,GO:0042221,GO:0042325,GO:0042327,GO:0042393,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043434,GO:0043567,GO:0043568,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0045787,GO:0045840,GO:0045893,GO:0045931,GO:0045935,GO:0045937,GO:0045944,GO:0046907,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048585,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051130,GO:0051169,GO:0051170,GO:0051171,GO:0051173,GO:0051174,GO:0051179,GO:0051234,GO:0051246,GO:0051247,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0051781,GO:0051783,GO:0051785,GO:0060255,GO:0060548,GO:0065007,GO:0065008,GO:0070013,GO:0070577,GO:0070727,GO:0070887,GO:0071310,GO:0071345,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071705,GO:0071840,GO:0072594,GO:0080090,GO:0090068,GO:0098760,GO:0098761,GO:0140030,GO:0140033,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141,GO:2001233,GO:2001234,GO:2001236,GO:2001237
Exons5
Evalue4.67e-72
EggNOG OGsCOG2319@1|root,KOG3213@1|root,KOG0644@2759|Eukaryota,KOG3213@2759|Eukaryota
Descriptionregulation of cilium movement involved in cell motility
Cds size888
COG categoryS
BRITEko00000,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1680789137.6020465-CDS-C-tenellus_contig10560:137..2931680789137.6020465-CDS-C-tenellus_contig10560:137..293Choristocarpus tenellus KU2346CDSC-tenellus_contig10560 138..293 +
1680789137.6139488-CDS-C-tenellus_contig10560:436..6421680789137.6139488-CDS-C-tenellus_contig10560:436..642Choristocarpus tenellus KU2346CDSC-tenellus_contig10560 437..642 +
1680789137.6302192-CDS-C-tenellus_contig10560:997..11481680789137.6302192-CDS-C-tenellus_contig10560:997..1148Choristocarpus tenellus KU2346CDSC-tenellus_contig10560 998..1148 +
1680789137.641701-CDS-C-tenellus_contig10560:1863..20671680789137.641701-CDS-C-tenellus_contig10560:1863..2067Choristocarpus tenellus KU2346CDSC-tenellus_contig10560 1864..2067 +
1680789137.6507125-CDS-C-tenellus_contig10560:2628..27991680789137.6507125-CDS-C-tenellus_contig10560:2628..2799Choristocarpus tenellus KU2346CDSC-tenellus_contig10560 2629..2799 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10560.1.1prot_C-tenellus_contig10560.1.1Choristocarpus tenellus KU2346polypeptideC-tenellus_contig10560 138..2799 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_C-tenellus_contig10560.1.1

>prot_C-tenellus_contig10560.1.1 ID=prot_C-tenellus_contig10560.1.1|Name=mRNA_C-tenellus_contig10560.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=296bp
STKQVVYTPDGTRLLSCGSDGLLCLYNVGRGYQPVRMLACDPPAPGSEMS
LTVSPGSDRVAVLGPEPTCILLYDLASLVLRKRLGRPERRGPGEGSYGGG
MGIGAGLDRVGSGGGWQPQVGAWEGQATAAWGGVGAFLHASFSGDGSDLM
ACTRSKLFRFPLRNSSRWGVGGTNDIQVWSALLPCKVEKVVSLLPPQGPG
LLLASPAPAPVPVPGAGPGGGRSLVGKALVSASELCLCQVHRDISSASVV
LSMPQVFAAHSAPLSAAAFSRCGTHLVTCDASGVVLLWSNLASPDP
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mRNA from alignment at C-tenellus_contig10560:138..2799+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_C-tenellus_contig10560.1.1 ID=mRNA_C-tenellus_contig10560.1.1|Name=mRNA_C-tenellus_contig10560.1.1|organism=Choristocarpus tenellus KU2346|type=mRNA|length=2662bp|location=Sequence derived from alignment at C-tenellus_contig10560:138..2799+ (Choristocarpus tenellus KU2346)
TCCACCAAGCAGGTGGTGTATACCCCCGATGGAACACGCCTCCTCTCCTG
TGGGTCTGACGGCCTGCTGTGCCTCTACAACGTGGGACGCGGATACCAGC
CCGTGCGTATGCTGGCGTGCGATCCCCCTGCTCCTGGGTCTGAGATGTCT
CTCACGGTGAGGGGGCTGTCCCACATGGGGATGAGGTTGCTGTGCATTCT
AACATTGGGTGTTTTCCACGTCAAACTCCCCCCATGTGTTAGCCTTCCCT
GTACACAATCACCCAATATATGTATTGTTGCACCCTTCGATCCACAAAGG
TATCGCCCGGGAGCGATCGAGTTGCAGTGCTGGGGCCGGAGCCAACGTGC
ATATTGTTGTACGACCTCGCCTCCCTGGTTCTTCGAAAGCGTTTGGGTCG
CCCAGAGCGAAGAGGGCCTGGGGAGGGCAGCTACGGCGGTGGCATGGGGA
TCGGTGCTGGATTGGATCGGGTTGGCAGCGGAGGAGGATGGCAGCCGCAG
GTGGGGTGGTGGGGGTAGATAGCACTATTTTTCCGAGGTGTTGAGGTGGG
AGTATTTATTGGCAATGTGCAATATATCCAGTTAGGTTGGCAGTTATTGA
TTGGCAGTGCGTGTTTGTGTGCCCACAGATTCAATACATAGTCCTTGTGA
GCCTTGTCTTCCCTTTTCTTTGTTGTCCTTTCTCCTTCCCCCTCATTTTC
CTTCTCAGCACTTACTTCCACCTCCCCATGCCCAACCACCCCCCCTCTTC
CACCGTAGTTAGTGGCCACTTTTCACCTTCAGCAACTTATTTACCCCTTC
CCCAATCCTCACTTCTCTAATGTCCAAGGGTATTGATGGTGCTGGGGAGG
GTGGTATCAGGGCTTGGGAAGGGCAAGCCACTGCGGCATGGGGAGGGGTG
GGAGCATTCCTTCATGCATCCTTCAGTGGAGATGGGTCTGACCTAATGGC
CTGCACCCGGTCGAAGCTATTCAGATTTCCACTAAGAAACAGCTCAAGGT
GGGGGGTGGGGGTGGAGATGTGACTGTTTTCAGGTGGGGTGGAAGGTGTG
TGCAGGGTGTGGGCTGGATAATTAAGAGTGTAAATATCTGGTGCTACTAC
ATGTATGCCAAGAATATAATTTTTTTGTCTTTTTTTGTCTTTTTATTAAA
TTTTACTTAATTTTTTTTTTTTGCAGTTCAGTATAGAGTGATGTTTCAGA
GGTAGGAGAGGTTGCATGTCGAATGCATTCGATTGACTGAATGTAGCATG
AGTGTAGGTTGCATGGGAACTAACTACCCTATTGGTGTAAATATAGGTTC
CTTTTTGGTACTATGTGACCCTCACCTCCACTTAAGAAAAAAAAATCTTG
TCATGCATGGCTAGTAAGGGTGTCAACAGACAACGAGCTCTCCCCACAAG
ATGTTTAAAGTACACAAGAGACTATCACCTACACAAGAGACTATCACCTA
CCTGCCAAATCGTTCAAAATATGTACTTTTCTGCTTGCTGCACTTTTTTG
GAAGCCTGTGGTGGAGGCAACACCATACGCAGTGTATCAAGTACTTTGAT
GTACTTGGCAGTCAGTGTTAGGTAGGTGCCTCAACTCCATCATACTACCT
GACTTCACACCCATGCCCCACCTCCCCCGTAAATATACCTTACAACTACG
CCTATGCCCAGTTTGTTCTCTTCCCTCTCTCTCCTCCCATCTCCCCTTCA
TTGCTTGACCAACTTCCTATAGTGAGGGCACCAACGATATCCAGGTGTGG
TCTGCTCTTCTCCCTTGCAAAGTTGAGAAGGTTGTGTCCCTACTCCCTCC
CCAGGGGCCAGGATTGCTTTTGGCTTCCCCTGCCCCTGCCCCTGTCCCTG
TCCCTGGGGCCGGCCCTGGAGGAGGCAGAAGTCTCGTGGGGAAGGCCCTG
GTCTCAGCTTCTGAGCTTTGTCTGTGCCAGGTATGAGAACTGGTTTTGTA
TGGGGGAGTGTTATATGAGAGGGGAGGGAGTGGGAGGGTGGCGGTCTACA
AGCATGCTAATTTGGAATTCATTCTATCTCATGGGATTCCATTCATAGGG
TTGCTCTATCATGTCACACACACATTCATCCCTCATTTTGTTCACCTATT
TGATCTTTGGATGCATGCCCAATTCGTTCACATATTCTTACAACTACTTT
GACTTAGACCTGCTGGTACTGATGAGGGGGTATTAGCTTTTGCACCATTG
GCAATGCTTTTATCTCTGGAGAGGGGAGAGGAGGAGTTGGGTCATGGTTG
GAAGGAGATGTACTGGGATTACCGAACAAATTGCAGAGTATGTTTATATG
AATTGTGTTTGAGAAAATATCCACAGTCCAACAATTGATTGCAATTCTTG
AACTCTTCAATATAGTACAACCACACACACACACACACGCACACGCGCGC
GCGCGCGCACAAATCCAACACATTTACAGAAAGCTCTCTGACACCGCCCC
CCCTTCCCCCCCTTAACTCCCCCCAAATCCCTGCTGAACAGGTCCACCGT
GACATTTCAAGTGCGTCCGTGGTGCTCTCCATGCCTCAGGTCTTTGCTGC
GCACTCTGCCCCTCTATCCGCTGCAGCCTTCTCGAGGTGTGGCACTCATC
TTGTGACATGTGATGCAAGCGGTGTGGTGCTATTGTGGTCCAACCTGGCA
TCCCCAGACCCA
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Coding sequence (CDS) from alignment at C-tenellus_contig10560:138..2799+

>mRNA_C-tenellus_contig10560.1.1 ID=mRNA_C-tenellus_contig10560.1.1|Name=mRNA_C-tenellus_contig10560.1.1|organism=Choristocarpus tenellus KU2346|type=CDS|length=888bp|location=Sequence derived from alignment at C-tenellus_contig10560:138..2799+ (Choristocarpus tenellus KU2346)
TCCACCAAGCAGGTGGTGTATACCCCCGATGGAACACGCCTCCTCTCCTG
TGGGTCTGACGGCCTGCTGTGCCTCTACAACGTGGGACGCGGATACCAGC
CCGTGCGTATGCTGGCGTGCGATCCCCCTGCTCCTGGGTCTGAGATGTCT
CTCACGGTATCGCCCGGGAGCGATCGAGTTGCAGTGCTGGGGCCGGAGCC
AACGTGCATATTGTTGTACGACCTCGCCTCCCTGGTTCTTCGAAAGCGTT
TGGGTCGCCCAGAGCGAAGAGGGCCTGGGGAGGGCAGCTACGGCGGTGGC
ATGGGGATCGGTGCTGGATTGGATCGGGTTGGCAGCGGAGGAGGATGGCA
GCCGCAGGTGGGGGCTTGGGAAGGGCAAGCCACTGCGGCATGGGGAGGGG
TGGGAGCATTCCTTCATGCATCCTTCAGTGGAGATGGGTCTGACCTAATG
GCCTGCACCCGGTCGAAGCTATTCAGATTTCCACTAAGAAACAGCTCAAG
GTGGGGGGTGGGGGGCACCAACGATATCCAGGTGTGGTCTGCTCTTCTCC
CTTGCAAAGTTGAGAAGGTTGTGTCCCTACTCCCTCCCCAGGGGCCAGGA
TTGCTTTTGGCTTCCCCTGCCCCTGCCCCTGTCCCTGTCCCTGGGGCCGG
CCCTGGAGGAGGCAGAAGTCTCGTGGGGAAGGCCCTGGTCTCAGCTTCTG
AGCTTTGTCTGTGCCAGGTCCACCGTGACATTTCAAGTGCGTCCGTGGTG
CTCTCCATGCCTCAGGTCTTTGCTGCGCACTCTGCCCCTCTATCCGCTGC
AGCCTTCTCGAGGTGTGGCACTCATCTTGTGACATGTGATGCAAGCGGTG
TGGTGCTATTGTGGTCCAACCTGGCATCCCCAGACCCA
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