prot_C-tenellus_contig10560.1.1 (polypeptide) Choristocarpus tenellus KU2346

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_C-tenellus_contig10560.1.1
Unique Nameprot_C-tenellus_contig10560.1.1
Typepolypeptide
OrganismChoristocarpus tenellus KU2346 (Choristocarpus tenellus KU2346)
Sequence length296
Homology
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BLAST of mRNA_C-tenellus_contig10560.1.1 vs. uniprot
Match: A0A6H5JNU2_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JNU2_9PHAE)

HSP 1 Score: 256 bits (655), Expect = 5.930e-74
Identity = 154/327 (47.09%), Postives = 196/327 (59.94%), Query Frame = 0 
Query:    1 STKQVVYTPDGTRLLSCGSDGLLCLYNVGRGYQPVRMLACDPPAPGSEMSLTVSPGSDRVAVLGPEPTCILLYDLASLVLRKRLGRPERRGPGEGSYGGGMGIGAGLDRVGSGGGWQPQVGAWEGQATAAWGGV-------GAFLHASFSGDGSDLMACTRSKLFRFPLRNSSRWGVGGTNDIQVWSALLPCKVEKVVSLL-PPQGPGLLLASPAXXXXXXXXXXXX-----------------GGRSLVGKAL------VSASELCLCQVHRDISSASVVLSMPQVFAAHSAPLSAAAFSRCGTHLVTCDASGVVLLWSNLASPDP 296
            + +QV +TPDGTRL+S G DGLLCLY+V +GY P R++ACD P PG  +SL+VSPGSDRVAV+G EP+CILLYDLA+L L+ RLG+P RRG G  +     G+G     +G    W  + G+ +   +             G FLHA+FSGDG+DL+ACT +KLFRFPL         G  D+  WSALLPCK    ++   P  GPGL+L SPA                             G R    +AL      ++ SEL L QVHRD  +ASVV+S PQ FAAH++P++ AAFS  G  L+TCD +GVVLLWSNLA+P P
Sbjct: 1121 AVQQVTFTPDGTRLISAGQDGLLCLYDVTQGYHPWRVMACDEPQPGRPISLSVSPGSDRVAVIGTEPSCILLYDLATLALKGRLGKPGRRGGGRFA----SGVGXXXXXLGMMQPWSHRPGSSDAAQSXXXXXXXXXXXXXGGFLHAAFSGDGADLLACTATKLFRFPL---------GGGDVHAWSALLPCKAGPAMAACNPATGPGLILVSPAEPAAGAGEPATTSTASAWGGEAGCWTGGGGKRGAAPRALGGGGSALAPSELFLSQVHRDARNASVVISAPQAFAAHASPVTVAAFSAGGDRLITCDGTGVVLLWSNLAAPAP 1434
The following BLAST results are available for this feature:
BLAST of mRNA_C-tenellus_contig10560.1.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JNU2_9PHAE5.930e-7447.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001680WD40 repeatSMARTSM00320WD40_4coord: 250..289
e-value: 0.0018
score: 27.5
coord: 2..27
e-value: 370.0
score: 0.8
IPR015943WD40/YVTN repeat-like-containing domain superfamilyGENE3D2.130.10.10coord: 1..295
e-value: 5.9E-12
score: 47.1
IPR036322WD40-repeat-containing domain superfamilySUPERFAMILY50978WD40 repeat-likecoord: 5..289

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
C-tenellus_contig10560contigC-tenellus_contig10560:138..2799 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
Choristocarpus tenellus KU2346 OGS1.02022-07-08
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_C-tenellus_contig10560.1.1mRNA_C-tenellus_contig10560.1.1Choristocarpus tenellus KU2346mRNAC-tenellus_contig10560 138..2799 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_C-tenellus_contig10560.1.1 ID=prot_C-tenellus_contig10560.1.1|Name=mRNA_C-tenellus_contig10560.1.1|organism=Choristocarpus tenellus KU2346|type=polypeptide|length=296bp
STKQVVYTPDGTRLLSCGSDGLLCLYNVGRGYQPVRMLACDPPAPGSEMS
LTVSPGSDRVAVLGPEPTCILLYDLASLVLRKRLGRPERRGPGEGSYGGG
MGIGAGLDRVGSGGGWQPQVGAWEGQATAAWGGVGAFLHASFSGDGSDLM
ACTRSKLFRFPLRNSSRWGVGGTNDIQVWSALLPCKVEKVVSLLPPQGPG
LLLASPAPAPVPVPGAGPGGGRSLVGKALVSASELCLCQVHRDISSASVV
LSMPQVFAAHSAPLSAAAFSRCGTHLVTCDASGVVLLWSNLASPDP
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001680WD40_repeat
IPR015943WD40/YVTN_repeat-like_dom_sf
IPR036322WD40_repeat_dom_sf